scholarly journals Secondary-structure characterization by far-UV CD of highly purified uncoupling protein 1 expressed in yeast

2004 ◽  
Vol 380 (1) ◽  
pp. 139-145 ◽  
Author(s):  
Pierre DOUETTE ◽  
Rachel NAVET ◽  
Fabrice BOUILLENNE ◽  
Alain BRANS ◽  
Claudine SLUSE-GOFFART ◽  
...  

The rat UCP1 (uncoupling protein 1) is a mitochondrial inner-membrane carrier involved in energy dissipation and heat production. We expressed UCP1 carrying a His6 epitope at its C-terminus in Saccharomyces cerevisiae mitochondria. The recombinant-tagged UCP1 was purified by immobilized metal-ion affinity chromatography to homogeneity (>95%). This made it suitable for subsequent biophysical characterization. Fluorescence resonance energy transfer experiments showed that n-dodecyl-β-d-maltoside-solubilized UCP1–His6 retained its PN (purine nucleotide)-binding capacity. The far-UV CD spectrum of the functional protein clearly indicated the predominance of α-helices in the UCP1 secondary structure. The UCP1 secondary structure exhibited an α-helical degree of approx. 68%, which is at least 25% higher than the previously reported estimations based on computational predictions. Moreover, the helical content remained unchanged in free and PN-loaded UCP1. A homology model of the first repeat of UCP1, built on the basis of X-ray-solved close parent, the ADP/ATP carrier, strengthened the CD experimental results. Our experimental and computational results indicate that (i) α-helices are the major component of UCP1 secondary structure; (ii) PN-binding mechanism does not involve significant secondary-structure rearrangement; and (iii) UCP1 shares similar secondary-structure characteristics with the ADP/ATP carrier, at least for the first repeat.

2004 ◽  
Vol 164 (5) ◽  
pp. 661-666 ◽  
Author(s):  
Sabine H. Wimmer-Kleikamp ◽  
Peter W. Janes ◽  
Anthony Squire ◽  
Philippe I.H. Bastiaens ◽  
Martin Lackmann

Eph receptors and their cell membrane–bound ephrin ligands regulate cell positioning and thereby establish or stabilize patterns of cellular organization. Although it is recognized that ephrin clustering is essential for Eph function, mechanisms that relay information of ephrin density into cell biological responses are poorly understood. We demonstrate by confocal time-lapse and fluorescence resonance energy transfer microscopy that within minutes of binding ephrin-A5–coated beads, EphA3 receptors assemble into large clusters. While remaining positioned around the site of ephrin contact, Eph clusters exceed the size of the interacting ephrin surface severalfold. EphA3 mutants with compromised ephrin-binding capacity, which alone are incapable of cluster formation or phosphorylation, are recruited effectively and become phosphorylated when coexpressed with a functional receptor. Our findings reveal consecutive initiation of ephrin-facilitated Eph clustering and cluster propagation, the latter of which is independent of ephrin contacts and cytosolic Eph signaling functions but involves direct Eph–Eph interactions.


2018 ◽  
Vol 150 (4) ◽  
pp. 625-635 ◽  
Author(s):  
Gucan Dai ◽  
Zachary M. James ◽  
William N. Zagotta

KCNH voltage-gated potassium channels (EAG, ERG, and ELK) play significant roles in neuronal and cardiac excitability. They contain cyclic nucleotide-binding homology domains (CNBHDs) but are not directly regulated by cyclic nucleotides. Instead, the CNBHD ligand-binding cavity is occupied by an intrinsic ligand, which resides at the intersubunit interface between the N-terminal eag domain and the C-terminal CNBHD. We show that, in Danio rerio ELK channels, this intrinsic ligand is critical for voltage-dependent potentiation (VDP), a process in which channel opening is stabilized by prior depolarization. We demonstrate that an exogenous peptide corresponding to the intrinsic ligand can bind to and regulate zebrafish ELK channels. This exogenous intrinsic ligand inhibits the channels before VDP and potentiates the channels after VDP. Furthermore, using transition metal ion fluorescence resonance energy transfer and a fluorescent noncanonical amino acid L-Anap, we show that there is a rearrangement of the intrinsic ligand relative to the CNBHD during VDP. We propose that the intrinsic ligand switches from antagonist to agonist as a result of a rearrangement of the eag domain–CNBHD interaction during VDP.


2021 ◽  
Vol 25 ◽  
Author(s):  
Jinhua Xie ◽  
Le Wang ◽  
Xiqi Su ◽  
João Rodrigues

: Coumarin-based derivatives have easy modification and tunable properties and have been synthesized and applied in many areas including pro-drugs, biomedical materials, and chemical and biological sensing. In this review, recent advances of coumarin-based fluorescent probes for biosensing are reported for metal ion imaging. Metal detection in living cells will be highlighted with representative examples together with fluorescence response mechanisms such as photoinduced electron transfer (PET), intramolecular charge transfer (ICT), and fluorescence resonance energy transfer (FRET). Some future perspectives are also briefly mentioned.


Blood ◽  
2005 ◽  
Vol 106 (11) ◽  
pp. 1646-1646
Author(s):  
Subramanian Yegneswaran ◽  
James R. Roberts ◽  
Richard A. McClintock ◽  
Zaverio M. Ruggeri

Abstract Glycoprotein (GP) Ib in the GPIb-IX-V receptor complex is the most abundant binding site for thrombin on the platelet surface. Virtually the entire thrombin binding capacity of GPIb has been shown to reside on the N-terminal region of the GPIba subunit of GPIb. Recently, Celikel et al and Dumas et al independently solved the structure of the thrombin-GPIba complex. Although comparable N-terminal fragments, comprising residues 1–290 of GPIba, were used for crystallization in both studies, significant differences existed between the two structures. Thus, it is still unclear how GPIb interacts with thrombin. In this study we have examined the interaction of GPIba with thrombin in solution phase. Human a-thrombin was labeled active site-specifically with either dansyl (D) dye via a Glu-Gly-Arg (EGR) linker to yield DEGR-thrombin or with a fluorescein or 5-((((2-iodoacetyl)amino)ethyl)amino)naphthalene-1-sulfonic acid dye (IAEDANS) via a Phe-Pro-Arg tether to yield Fluorescein-thrombin and AEDANS-thrombin, respectively. When DEGR-thrombin (initially 100 nM) was titrated with human glycocalicin, the N-terminal fragment of GPIbα compring ~400 residues, the steady state anisotropy of DEGR-thrombin decreased by ~ 22% before reaching a plateau at ~ 100 nM protein suggesting an interaction between Glycocalicin and DEGR-thrombin. A ~ 10% increase in anisotropy of the dansyl moiety was observed when a recombinant wild-type fragment of GPIba (residues 1–290) containing the three sulfated-tyrosines at positions 276, 277 and 279 was titrated into DEGR-thrombin. However, this change in anisotropy was not observed when either a mutant with tyrosine 276 mutated to phenylalanine (Y276F) or a Y279F mutant (named analogously) were titrated into DEGR-thrombin. To examine if dimerization of GPIba was important for thrombin interaction, a construct was made such that residues 1–288 of GPIba were covalently linked through a C-terminal extended sequence containing 4 Cys residues, and expressed as dimer (C65 +). When C65+ was titrated into DEGR-thrombin, the anisotropy of the dansyl probe increased by ~ 29% before reaching a plateau at 130 nM C65+, suggesting that thrombin can bind dimeric GPIba. To elucidate the stoicheometry of the thrombin-GPIba complex, resonance energy transfer (RET) experiments were performed between AEDANS donor-labeled thrombin and Fluorescein acceptor labeled thrombin. The AEDANS-thrombin and Fl-thrombin were mixed in equimolar ratios and then titrated with increasing amounts of GPIba. No change in donor intensity was observed suggestive of the absence of a AEDANS-thrombin- GPIba- Fl-thrombin complex. In conclusion, our data suggests that the GPIba interaction with thrombin can be observed in solution phase using steady state fluorescence by appropriately active site-labeled thrombin. Tyrosine sulfation at positions 276 and 279 are critical for this interaction. This observation is in complete agreement with both crystal structures where the contact site with exosite II of thrombin seems to be mediated by residues 275–279 of GPIba. However, using RET, we could not find a thrombin-GPIba-thrombin complex in solution under the present experimental conditions.


2016 ◽  
Vol 147 (2) ◽  
pp. 201-216 ◽  
Author(s):  
William N. Zagotta ◽  
Moshe T. Gordon ◽  
Eric N. Senning ◽  
Mika A. Munari ◽  
Sharona E. Gordon

Despite recent advances, the structure and dynamics of membrane proteins in cell membranes remain elusive. We implemented transition metal ion fluorescence resonance energy transfer (tmFRET) to measure distances between sites on the N-terminal ankyrin repeat domains (ARDs) of the pain-transducing ion channel TRPV1 and the intracellular surface of the plasma membrane. To preserve the native context, we used unroofed cells, and to specifically label sites in TRPV1, we incorporated a fluorescent, noncanonical amino acid, L-ANAP. A metal chelating lipid was used to decorate the plasma membrane with high-density/high-affinity metal-binding sites. The fluorescence resonance energy transfer (FRET) efficiencies between L-ANAP in TRPV1 and Co2+ bound to the plasma membrane were consistent with the arrangement of the ARDs in recent cryoelectron microscopy structures of TRPV1. No change in tmFRET was observed with the TRPV1 agonist capsaicin. These results demonstrate the power of tmFRET for measuring structure and rearrangements of membrane proteins relative to the cell membrane.


2007 ◽  
Vol 27 (13) ◽  
pp. 4745-4758 ◽  
Author(s):  
Mihai Ciubotaru ◽  
Aleksei N. Kriatchko ◽  
Patrick C. Swanson ◽  
Frank V. Bright ◽  
David G. Schatz

ABSTRACT A critical step in V(D)J recombination is the synapsis of complementary (12/23) recombination signal sequences (RSSs) by the RAG1 and RAG2 proteins to generate the paired complex (PC). Using a facilitated ligation assay and substrates that vary the helical phasing of the RSSs, we provide evidence that one particular geometric configuration of the RSSs is favored in the PC. To investigate this configuration further, we used fluorescent resonance energy transfer (FRET) to detect the synapsis of fluorescently labeled RSS oligonucleotides. FRET requires an appropriate 12/23 RSS pair, a divalent metal ion, and high-mobility-group protein HMGB1 or HMGB2. Energy transfer between the RSSs was detected with all 12/23 RSS end positions of the fluorescent probes but was not detected when probes were placed on the two ends of the same RSS. Energy transfer was confirmed to originate from the PC by using an in-gel FRET assay. The results argue against a unique planar configuration of the RSSs in the PC and are most easily accommodated by models in which synapsed 12- and 23-RSSs are bent and cross one another, with implications for the organization of the RAG proteins and the DNA substrates at the time of cleavage.


2003 ◽  
Vol 372 (1) ◽  
pp. e1-e2
Author(s):  
Robert INSALL

This commentary describes the study by Calleja and co-workers, who have used fluorescence resonance energy transfer between two fluorescent proteins fused to one protein kinase (protein kinase B/Akt) to reveal conformational changes in a functional protein. The findings of their study offer an intriguing insight into the behaviour of an enzyme that is essential for multiple aspects of mammalian signalling.


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