scholarly journals Purification and properties of formate dehydrogenase from Pseudomonas aeruginosa. Characterization of haem and iron-sulphur centres by magnetic-circular-dichroism and electron-paramagnetic-resonance spectroscopy

1987 ◽  
Vol 243 (1) ◽  
pp. 225-233 ◽  
Author(s):  
C Godfrey ◽  
A Coddington ◽  
C Greenwood ◽  
A J Thomson ◽  
P M A Gadsby
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Low Temperature ◽  
Nitrate Reductase ◽  
Formate Dehydrogenase ◽  
Magnetic Circular Dichroism ◽  
Sodium Dithionite ◽  
Anaerobic Growth ◽  
Organic Radical ◽  
Resonance Spectroscopy ◽  
Reduced State

The purification of formate dehydrogenase (FDH) from Pseudomonas aeruginosa after anaerobic growth on nitrate-containing medium was carried out. The separation of the FDH enzyme from nitrate reductase (NiR), which are found together in a particle fraction and constitute the short respiratory chain of this bacterium, has been followed by optical, magnetic c.d. (m.c.d.) and e.p.r. spectroscopy. These techniques have allowed the haem, iron-sulphur clusters and molybdenum components to be detected and, in part, their nature to be determined. Attempts to extract FDH anaerobically in the absence of sodium dithionite led to loss of activity. Addition of sodium dithionite maintained the activity of the enzyme, even after subsequent exposure to air, in an assay involving formate reduction with Nitro Blue Tetrazolium as reductant. Three preparations of FDH have been examined spectroscopically. The preparations vary in the amount of contaminating nitrate reductase, the amount of cytochrome c present and the concentration of oxidized [3Fe-4S] cluster. Optical spectra and low-temperature m.c.d. spectroscopy show the loss of a cytochrome-containing protohaem IX co-ordinated by methionine and histidine as NiR is separated from the preparation. In its purest state FDH contains one molecule of cytochrome co-ordinated by two histidine ligands in the oxidized state. This cytochrome has an e.p.r. spectrum with gz = 3.77, the band having the unusual ramp shape characteristic of highly anisotropic low-spin ferric haem. It also shows a charge-transfer band of high intensity in the m.c.d. spectrum at 1545 nm. It has recently been shown [Gadsby & Thomson (1986) FEBS Lett. 197, 253-257] that these spectroscopic properties are diagnostic of a bishistidine co-ordinated haem with steric constraint of the axial ligands. The e.p.r. and m.c.d. spectra of the reduced state of FDH reveal the presence of an iron-sulphur cluster of the [4Fe-4S]+ type. The g-values are 2.044, 1.943 and 1.903. An iron-sulphur cluster of the class [3Fe-4S], detected by e.p.r. spectroscopy in the oxidized state and by low-temperature m.c.d. spectroscopy in the reduced state, is purified away with the NiR. Finally, an e.p.r. signal at g = 2.0 with a narrow bandwidth which persists to 80 K is observed in the purest preparation of FDH. This may arise from an organic radical species.

scholarly journals Electron-paramagnetic-resonance and magnetic-circular-dichroism studies on the formate dehydrogenase-nitrate reductase particle from Pseudomonas aeruginosa

1987 ◽  
Vol 243 (1) ◽  
pp. 241-248 ◽  
Author(s):  
C Godfrey ◽  
P M A Gadsby ◽  
A J Thomson ◽  
C Greenwood ◽  
A Coddington
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Electron Transfer ◽  
Nitrate Reductase ◽  
Formate Dehydrogenase ◽  
Magnetic Circular Dichroism ◽  
Paramagnetic Resonance ◽  
Membrane Bound ◽  
Electron Paramagnetic ◽  
Transfer Chain ◽  
Mediate Electron Transfer

The membrane-bound respiratory particle complex of Pseudomonas aeruginosa, which reduces nitrate to nitrite using formate as the electron donor, was prepared and characterized by e.p.r. and low-temperature magnetic c.d. (m.c.d.) spectroscopy. The particle complex has two enzymic components, namely nitrate reductase (NiR) and formate dehydrogenase (FDH), which are multi-centred proteins containing molybdenum, iron-sulphur clusters and cytochrome. By using results from work on the purified extracted enzymes NiR and FDH to aid in the assignment, it has been possible to observe spectroscopically all the components of the electron-transfer chain in the intact particle. This led to a proposal for the organization of the metal components of the FDH-NiR chain. Molybdenum ions are at opposite ends of the chain and interact with, respectively, the formate-CO2 couple and the nitrate-nitrite couple. The molybdenum ion at the low-potential end of the chain passes electrons to cytochrome b of FDH, a bishistidine-co-ordinated haem with unusual steric restraint at the iron. The next component is a [4Fe-4S] cluster. This comprises all the components of FDH. Electrons are passed to the molybdenum of NiR via a number, probably two, of [4Fe-4S] clusters. No evidence has been found in this work for the presence of a quinone to mediate electron transfer between FDH and NiR. Cytochrome c appears to be able to feed electrons into the chain at the level of one of the [4Fe-4S] centres of NiR.

scholarly journals Cytochrome c″ isolated from Methylophilus methylotrophus. An example of bis-histidine-co-ordinated Fe3+ haem, with near-perpendicular orientation of the ligands

1990 ◽  
Vol 270 (2) ◽  
pp. 413-417 ◽  
Author(s):  
M J Berry ◽  
S J George ◽  
A J Thomson ◽  
H Santos ◽  
D L Turner
Keyword(s):  
Low Temperature ◽  
Cytochrome C ◽  
High Spin ◽  
Magnetic Circular Dichroism ◽  
Electron Paramagnetic Resonance Spectroscopy ◽  
Water Soluble ◽  
Reduced Form ◽  
Resonance Spectroscopy ◽  
Methylophilus Methylotrophus ◽  
Perpendicular Orientation

Cytochrome c″ (Methylophilus methylotrophus) is a soluble protein, Mr 15,000, possessing one haem which is high-spin in the reduced state but switches to a low-spin form on oxidation. Low-temperature electron-paramagnetic-resonance spectroscopy of the oxidized state shows a low-spin signal at gz = 3.65 with a folded line-shape typical of a haem of low rhombicity, and the near-infrared magnetic-circular-dichroism (m.c.d.) spectra reveal an unusually intense (delta epsilon = 400 M-1.cm-1 at 5 T, 4.2 K) charge-transfer band at 1560 nm, establishing that the oxidized haem is co-ordinated by two His residues in a near-perpendicular orientation. This conformation is well established for transmembrane b cytochromes, but this appears to be the first example in a water-soluble cytochrome. The low-temperature m.c.d. spectra of the reduced form of the protein confirms that the haem contains a high-spin Fe2+ ligated by one His residue. The redox-linked spin-state change releases a His group. Since this residue is likely to bind a proton at pH values less than 6.5, this cytochrome may provide a useful model of a molecular mechanism of a redox-linked proton uptake and release process.

scholarly journals The nature of species prepared by photolysis of half-reduced, fully reduced and fully reduced carbonmonoxy-cytochrome c-551 peroxidase from Pseudomonas aeruginosa

1984 ◽  
Vol 223 (2) ◽  
pp. 379-391 ◽  
Author(s):  
C Greenwood ◽  
N Foote ◽  
J Peterson ◽  
A J Thomson
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Fine Structure ◽  
Low Temperature ◽  
Cytochrome C ◽  
Activation Barrier ◽  
Magnetic Circular Dichroism ◽  
High Potential ◽  
Quantum Mechanical ◽  
Methionine Residue ◽  
Magnetic Circular Dichroism Spectroscopy

The half-reduced, fully reduced and fully reduced CO-bound forms of the enzyme cytochrome c-551 peroxidase isolated from Pseudomonas aeruginosa were examined by a combination of low-temperature absorption and magnetic-circular-dichroism spectroscopy. Deliberate low-temperature (4.2K) photolysis of these forms of the enzyme, in all of which the high-potential haem is in the ferrous state, revealed that this haem group, assigned to have a histidine-methionine ligand set, is photosensitive. The photolabile ligand is most likely to be the methionine residue, and the product of photolysis, namely the high-spin (S = 2) ferrous form, is stable at low temperature (4.2K). Warming to approx. 20K allows thermal recombination to occur, restoring the low-spin (S = 0) state. The low-potential haem (bis-histidine ligation) is photoinert in both ferric and ferrous states; however, the photosensitive CO adduct of this centre cannot be maintained as the photolysed (S = 2) product at 4.2K. This surprising observation may be due to quantum-mechanical tunnelling of the CO through the activation barrier even at 4.2K, implying that the activation barrier to thermal recombination is both narrow and low. Low-temperature absorption spectroscopy reveals that the high-potential haem has a very characteristic low-spin ferrous spectrum with intense highly structured beta- and split alpha-bands, whereas the spectrum of the low-potential ferrous haem contains alpha- and beta-bands devoid of fine structure.

scholarly journals Fosfomycin and Tobramycin in Combination Downregulate Nitrate Reductase GenesnarGandnarH, Resulting in Increased Activity against Pseudomonas aeruginosa under Anaerobic Conditions

2013 ◽  
Vol 57 (11) ◽  
pp. 5406-5414 ◽  
Author(s):  
Gerard McCaughey ◽  
Deirdre F. Gilpin ◽  
Thamarai Schneiders ◽  
Lucas R. Hoffman ◽  
Matt McKevitt ◽  
...  
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Nitrate Reductase ◽  
Growth Curves ◽  
Anaerobic Growth ◽  
Anaerobic Conditions ◽  
Content Type ◽  
Transposon Mutants ◽  
Increased Activity ◽  
Increased Susceptibility

ABSTRACTThe activity of aminoglycosides, which are used to treatPseudomonas aeruginosarespiratory infection in cystic fibrosis (CF) patients, is reduced under the anaerobic conditions that reflect the CF lungin vivo. In contrast, a 4:1 (wt/wt) combination of fosfomycin and tobramycin (F:T), which is under investigation for use in the treatment of CF lung infection, has increased activity againstP. aeruginosaunder anaerobic conditions. The aim of this study was to elucidate the mechanisms underlying the increased activity of F:T under anaerobic conditions. Microarray analysis was used to identify the transcriptional basis of increased F:T activity under anaerobic conditions, and key findings were confirmed by microbiological tests, including nitrate utilization assays, growth curves, and susceptibility testing. Notably, growth in subinhibitory concentrations of F:T, but not tobramycin or fosfomycin alone, significantly downregulated (P< 0.05) nitrate reductase genesnarGandnarH, which are essential for normal anaerobic growth ofP. aeruginosa. Under anaerobic conditions, F:T significantly decreased (P< 0.001) nitrate utilization inP. aeruginosastrains PAO1, PA14, and PA14lasR::Gm, a mutant known to exhibit increased nitrate utilization. A similar effect was observed with two clinicalP. aeruginosaisolates. Growth curves indicate that nitrate reductase transposon mutants had reduced growth under anaerobic conditions, with these mutants also having increased susceptibility to F:T compared to the wild type under similar conditions. The results of this study suggest that downregulation of nitrate reductase genes resulting in reduced nitrate utilization is the mechanism underlying the increased activity of F:T under anaerobic conditions.

scholarly journals Involvement of NarK1 and NarK2 Proteins in Transport of Nitrate and Nitrite in the Denitrifying Bacterium Pseudomonas aeruginosa PAO1

2006 ◽  
Vol 72 (1) ◽  
pp. 695-701 ◽  
Author(s):  
Vandana Sharma ◽  
Chris E. Noriega ◽  
John J. Rowe
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Nitrate Reductase ◽  
Nitrate Uptake ◽  
Reductase Activity ◽  
Physiological Role ◽  
Genome Project ◽  
Anaerobic Growth ◽  
Wild Type ◽  
Uptake Rates ◽  
Nitrate And Nitrite

ABSTRACT Two transmembrane proteins were tentatively classified as NarK1 and NarK2 in the Pseudomonas genome project and hypothesized to play an important physiological role in nitrate/nitrite transport in Pseudomonas aeruginosa. The narK1 and narK2 genes are located in a cluster along with the structural genes for the nitrate reductase complex. Our studies indicate that the transcription of all these genes is initiated from a single promoter and that the gene complex narK1K2GHJI constitutes an operon. Utilizing an isogenic narK1 mutant, a narK2 mutant, and a narK1K2 double mutant, we explored their effect on growth under denitrifying conditions. While the ΔnarK1::Gm mutant was only slightly affected in its ability to grow under denitrification conditions, both the ΔnarK2::Gm and ΔnarK1K2::Gm mutants were found to be severely restricted in nitrate-dependent, anaerobic growth. All three strains demonstrated wild-type levels of nitrate reductase activity. Nitrate uptake by whole-cell suspensions demonstrated both the ΔnarK2::Gm and ΔnarK1K2::Gm mutants to have very low yet different nitrate uptake rates, while the ΔnarK1::Gm mutant exhibited wild-type levels of nitrate uptake. Finally, Escherichia coli narK rescued both the ΔnarK2::Gm and ΔnarK1K2::Gm mutants with respect to anaerobic respiratory growth. Our results indicate that only the NarK2 protein is required as a nitrate/nitrite transporter by Pseudomonas aeruginosa under denitrifying conditions.

scholarly journals Magnetic-circular-dichroism studies of haem a and its derivatives

1978 ◽  
Vol 173 (2) ◽  
pp. 411-417 ◽  
Author(s):  
T Brittain ◽  
C Greenwood ◽  
J P Springall ◽  
A J Thomson
Keyword(s):  
Circular Dichroism ◽  
Low Temperature ◽  
Electronic Spectrum ◽  
Magnetic Circular Dichroism ◽  
Sodium Dithionite ◽  
Formyl Group ◽  
Partial Assignment ◽  
Excess Sodium ◽  
Circular Dichroïsm ◽  
Magnetic Circular Dichroism Spectra

The low-temperature m.c.d.(magnetic-circular-dichroism) spectra of haem a derivatives are presented. It is shown that reduced haem a in pyridine contains the low-spin ferrous ion and that oxidized haem a in the presence of excess imidazole has the low-spin ferric form. Both the m.c.d. and the absorption spectra of haem a in excess pyridine are changed by the addition of excess sodium dithionite into a form similar to that of haems b and c. This is interpreted in terms of an attack, by reduced pyridine, at the 8-formyl group of the haem a ring. This leads to a partial assignment of the electronic spectrum of haem a.

scholarly journals Phenazines Regulate Nap-Dependent Denitrification inPseudomonas aeruginosaBiofilms

2018 ◽  
Vol 200 (9) ◽  
Author(s):  
Yu-Cheng Lin ◽  
Matthew D. Sekedat ◽  
William Cole Cornell ◽  
Gustavo M. Silva ◽  
Chinweike Okegbe ◽  
...  
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Nitrate Reductase ◽  
Electron Acceptor ◽  
Bacterial Infections ◽  
Redox State ◽  
Reductase Activity ◽  
Anaerobic Growth ◽  
Bet Hedging ◽  
Terminal Electron Acceptor ◽  
Content Type

ABSTRACTMicrobes in biofilms face the challenge of substrate limitation. In particular, oxygen often becomes limited for cells inPseudomonas aeruginosabiofilms growing in the laboratory or during host colonization. Previously we found that phenazines, antibiotics produced byP. aeruginosa, balance the intracellular redox state of cells in biofilms. Here, we show that genes involved in denitrification are induced in phenazine-null (Δphz) mutant biofilms grown under an aerobic atmosphere, even in the absence of nitrate. This finding suggests that resident cells employ a bet-hedging strategy to anticipate the potential availability of nitrate and counterbalance their highly reduced redox state. Consistent with our previous characterization of aerobically grown colonies supplemented with nitrate, we found that the pathway that is induced in Δphzmutant colonies combines the nitrate reductase activity of the periplasmic enzyme Nap with the downstream reduction of nitrite to nitrogen gas catalyzed by the enzymes Nir, Nor, and Nos. This regulatory relationship differs from the denitrification pathway that functions under anaerobic growth, with nitrate as the terminal electron acceptor, which depends on the membrane-associated nitrate reductase Nar. We identified the sequences in the promoter regions of thenapandniroperons that are required for the effects of phenazines on expression. We also show that specific phenazines have differential effects onnapgene expression. Finally, we provide evidence that individual steps of the denitrification pathway are catalyzed at different depths within aerobically grown biofilms, suggesting metabolic cross-feeding between community subpopulations.IMPORTANCEAn understanding of the unique physiology of cells in biofilms is critical to our ability to treat fungal and bacterial infections. Colony biofilms of the opportunistic pathogenPseudomonas aeruginosagrown under an aerobic atmosphere but without nitrate express a denitrification pathway that differs from that used for anaerobic growth. We report that the components of this pathway are induced by electron acceptor limitation and that they are differentially expressed over the biofilm depth. These observations suggest that (i)P. aeruginosaexhibits “bet hedging,” in that it expends energy and resources to prepare for nitrate availability when other electron acceptors are absent, and (ii) cells in distinct biofilm microniches may be able to exchange substrates to catalyze full denitrification.

scholarly journals Purification and properties of formate dehydrogenase from Pseudomonas aeruginosa. Electron-paramagnetic-resonance studies on the molybdenum centre

1987 ◽  
Vol 243 (1) ◽  
pp. 235-239 ◽  
Author(s):  
P M A Gadsby ◽  
C Greenwood ◽  
A Coddington ◽  
A J Thomson ◽  
C Godfrey
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Electron Paramagnetic Resonance ◽  
Hyperfine Coupling ◽  
Formate Dehydrogenase ◽  
Sodium Dithionite ◽  
Paramagnetic Resonance ◽  
Low Concentrations ◽  
Purification And Properties ◽  
Electron Paramagnetic ◽  
Fold Excess

Formate dehydrogenase from Pseudomonas aeruginosa contains molybdenum, a [4Fe-4S] cluster and cytochrome b. This paper reports the detection of molybdenum as Mo(V) by e.p.r. spectroscopy. In order to generate Mo(V) signals, addition of amounts of excess formate varying between 10- and 50-fold over enzyme, followed by 200-fold excess of sodium dithionite, were used. Two Mo(V) species were observed. One, the major component, has g1 = 2.012, g2 = 1.985 and g3 = 1.968, appeared at low concentrations of formate and increased linearly in intensity with increasing concentrations of formate up to 25-fold excess over the enzyme. At higher formate concentration this signal disappeared. The appearance and disappearance of this Mo(V) signal seems to parallel the state of reduction of the [4Fe-4S] clusters. A second, minor, Mo(V) species with g-values g1 = 1.996, g2 = 1.981 and g3 = 1.941 appears at a constant level during the formate-dithionite titration. No evidence has been obtained for nuclear hyperfine coupling to protons. The major Mo(V) species has unusual e.p.r. signals compared with other molybdenum-containing enzymes, except for that observed in the formate dehydrogenase from Methanobacterium formicicum [Barber, Siegel, Schauer, May & Ferry (1983) J. Biol. Chem. 258, 10839-10845]. The present work suggests that the enzyme is acting as a CO2 reductase, with dithionite as an electron donor to a [4Fe-4S] cluster, which in turn donates electrons to molybdenum, producing a Mo(V) species with CO2 bound to the metal.

scholarly journals Anaerobic Initial Reaction of n-Alkanes in a Denitrifying Bacterium: Evidence for (1-Methylpentyl)succinate as Initial Product and for Involvement of an Organic Radical in n-Hexane Metabolism

2001 ◽  
Vol 183 (5) ◽  
pp. 1707-1715 ◽  
Author(s):  
Ralf Rabus ◽  
Heinz Wilkes ◽  
Astrid Behrends ◽  
Antje Armstroff ◽  
Thomas Fischer ◽  
...  
Keyword(s):  
Electron Paramagnetic Resonance Spectroscopy ◽  
Radical Reaction ◽  
Anaerobic Growth ◽  
Gas Chromatography Mass Spectrometry ◽  
Side Chain ◽  
Radical Mechanism ◽  
Initial Reaction ◽  
Organic Radical ◽  
Resonance Spectroscopy ◽  
Denitrifying Bacterium

ABSTRACT A novel type of denitrifying bacterium (strain HxN1) with the capacity to oxidize n-alkanes anaerobically with nitrate as the electron acceptor to CO2 formed (1-methylpentyl)succinate (MPS) during growth on n-hexane as the only organic substrate under strict exclusion of air. Identification of MPS by gas chromatography-mass spectrometry was based on comparison with a synthetic standard. MPS was not formed during anaerobic growth on n-hexanoate. Anaerobic growth with [1-13C]n-hexane ord 14-n-hexane led to a 1-methylpentyl side chain in MPS with one 13C atom or 13 deuterium atoms, respectively. This indicates that the 1-methylpentyl side chain originates directly from n-hexane. Electron paramagnetic resonance spectroscopy revealed the presence of an organic radical in n-hexane-grown cells but not inn-hexanoate-grown cells. Results point at a mechanistic similarity between the anaerobic initial reaction ofn-hexane and that of toluene, even thoughn-hexane is much less reactive; the described initial reaction of toluene in anaerobic bacteria is an addition to fumarate via a radical mechanism yielding benzylsuccinate. We conclude thatn-hexane is activated at its second carbon atom by a radical reaction and presumably added to fumarate as a cosubstrate, yielding MPS as the first stable product. When 2,3-d 2-fumarate was added to cultures growing on unlabeled n-hexane, 3-d 1-MPS rather than 2,3-d 2-MPS was detected, indicating loss of one deuterium atom by an as yet unknown mechanism.

scholarly journals Nitrate Sensing and Metabolism Modulate Motility, Biofilm Formation, and Virulence in Pseudomonas aeruginosa

2007 ◽  
Vol 75 (8) ◽  
pp. 3780-3790 ◽  
Author(s):  
Nadine E. Van Alst ◽  
Kristin F. Picardo ◽  
Barbara H. Iglewski ◽  
Constantine G. Haidaris
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Nitrate Reductase ◽  
Biofilm Formation ◽  
Response Regulator ◽  
Sensor Response ◽  
Anaerobic Growth ◽  
C Elegans ◽  
Nitrate Sensor ◽  
Nitrate Dissimilation ◽  
Sequential Reduction

ABSTRACT Infection by the bacterial opportunist Pseudomonas aeruginosa frequently assumes the form of a biofilm, requiring motility for biofilm formation and dispersal and an ability to grow in nutrient- and oxygen-limited environments. Anaerobic growth by P. aeruginosa is accomplished through the denitrification enzyme pathway that catalyzes the sequential reduction of nitrate to nitrogen gas. Mutants mutated in the two-component nitrate sensor-response regulator and in membrane nitrate reductase displayed altered motility and biofilm formation compared to wild-type P. aeruginosa PAO1. Analysis of additional nitrate dissimilation mutants demonstrated a second level of regulation in P. aeruginosa motility that is independent of nitrate sensor-response regulator function and is associated with nitric oxide production. Because motility and biofilm formation are important for P. aeruginosa pathogenicity, we examined the virulence of selected regulatory and structural gene mutants in the surrogate model host Caenorhabditis elegans. Interestingly, the membrane nitrate reductase mutant was avirulent in C. elegans, while nitrate sensor-response regulator mutants were fully virulent. The data demonstrate that nitrate sensing, response regulation, and metabolism are linked directly to factors important in P. aeruginosa pathogenesis.

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