Phenotypic, Genetic and Ecological Variation in the Eucalyptus saligna̵1E. botryoides Complex

1993 ◽  
Vol 41 (3) ◽  
pp. 393 ◽  
Author(s):  
JA Passioura ◽  
JE Ash

Analysis of variation within the E. saligna-E. botryoides complex indicates a continuum of morphological variation, particularly in bud, fruit and bark characters, between the taxa. The continuum occurs between populations north of Sydney (which had always been recognised as E. saligna), and populations restricted to the coastal fringe (which had always been recognised as E. botryoides). There is a suggestion of a latitudinal cline in morphology of the intermediate populations, although it is complex, and shows significant local variation. Analysis of allozyme data indicates that most of the genetic variation within the complex is contained within rather than between populations, and that genetic distances between populations are more typical of within-species rather than between-species differences. The lack of allozyme divergence is attributed to either relatively rapid and recent differentiation or to extensive introgression following secondary contact of the taxa. Analysis of environmental variables reveals two discriminating factors in relation to the current distributions of populations within the complex. Firstly, the morphological gradient appears to follow an underlying temperature gradient, and secondly, E. botryoides occupies a separate niche associated with the distinct coastal environment on which it occurs. These key environmental parameters may have been important in the evolution of the complex along axes of latitude or temperature, and coastal versus inland habitat. Additionally, changes in distribution of the taxa as a result of climatic changes associated with glacial-interglacial cycles may also have played an important role in the formation of the complex.

1997 ◽  
Vol 66 (4) ◽  
pp. 257-262
Author(s):  
Cristian R. Altaba

The allozyme data base of Arntzen & García-París (1995) on midwife toads (Alytes, Discoglossidae) is reanalysed considering each locus as a discrete character. The phylogeny thus inferred differs from the one obtained with genetic distances in the position of A. dickhilleni from the Betic region – it appears that its sister species is the widespread A. obstetricans, not the Mallorcan endemic A. muletensis. This phylogenetic hypothesis agrees with the taxonomic treatment of the genus based on morphology. A testable biogeographic hypothesis is proposed to account for the diversification of midwife toads in Iberia and the Balearics. The postulated underlying geological changes were the spread of inland saline lakes that divided Iberia (16 mY B.P.), the emergence and break-up of the Betic orogen (14 mY), and the formation of the Betic Strait (8 mY). Dispersal over sea channels or during the Messinian Crisis (6 mY) are deemed unlikely on the basis of ecological and biogeographical data.


2003 ◽  
Vol 25 (1) ◽  
pp. 41 ◽  
Author(s):  
JM Macaranas ◽  
D Colgan ◽  
S Ingleby

The taxonomic status of fruitbats belonging to the genera Nyctimene and Rousettus from the Solomon Islands was investigated using allozyme electrophoresis. Two populations from the Bismarck Archipelago (Papua New Guinea) were included as reference profiles. The allozyme data at 23 loci assigned all specimens into either Nyctimene albiventer or Nyctimene major. The N. albiventer specimens comprised two subspecies, N. a. papuanus from the Bismarck Archipelago and N. a. bougainville from the Solomon Islands. No support was evident for bougainville being a separate species, and indeed the data suggest that N. a. bougainville encompasses the previously described species N. malaita and subspecies N. a. minor. Genetic distances between populations of R. amplexicaudatus from the Bismarck Archipelago and the Solomon Islands were generally low, supporting recent morphological assessments that the subspecies hedigeri, from the majority of the Solomon Islands, should be considered synonymous with subspecies brachyotis. An individual from Choiseul (Solomon Islands) with a distinctive allozyme profile is the only evidence of taxonomic complexity in R. amplexicaudatus.


Jurnal Dampak ◽  
2016 ◽  
Vol 13 (2) ◽  
pp. 68
Author(s):  
Denny Helard ◽  
Shinta Indah ◽  
Nurul Fitria

This study aimed to obtain a more comprehensive analysis of sulfate concentration of in Sungai Batang Arau, Padang. In addition to concentration profile of sulfate, correlation analysis between sulfate and environmental parameters (flowrate-Q, temperature-T, pH, DO and electrical Conductivity-EC) and spatial variation analysis of sulfate along the river were also performed. The analysis showed sulfate concentration tended to increase from upstream to downstream. Sulfate concentrations ranged from 25.9 to 115.1 mg / L and were below the quality standard (400 mg / L). Spearman Rank Correlation analysis showed a relative strong correlation of sulfate and significant with Q (r=0.581, p=0.000), T (r=0.448, p=0.008), and DHL (r=0.411, p=0.008) and no correlation with pH (r=-0.194, p=0.231) and DO (r=-0.279, p=0.081). Result of spatial analysis with a one-way ANOVA at 95% confidence level indicated that there was no a significant variability of sulfate concentration at the sampling stations (p> 0.05) except for S1 with S7 and S8. Moreover, cluster analysis grouped 8 sampling stations into two clusters, low and moderate polluted, based on similarities of sulfate characteristics. Keywords: Batang Arau, sulfate, correlation analysis, spatial variation analysisABSTRAKPenelitian ini bertujuan untuk memperoleh gambaran yang lebih lengkap tentang konsentrasi sulfat dan parameter lingkungan (debit, Q; pH, temperatur, T; dissolved oxygen, DO; dan daya hantar listrik, DHL) di Sungai Batang Arau, Padang. Selain menyajikan profil konsentrasi dan membandingkannya dengan baku mutu pada Peraturan Gubernur Sumatera Barat No. 5 Tahun 2008, analisis korelasi antar parameter dan variasi spasial konsentrasi sulfat di sepanjang sungai juga dilakukan. Hasil analisis menunjukkan konsentrasi sulfat cenderung meningkat dari hulu ke hilir sungai begitu juga dengan parameter lingkungan. Nilai konsentrasi sulfat secara rata-rata berada pada rentang 25,9-115,1 mg/L dan berada di bawah baku mutu (400 mg/L). Analisis korelasi Rank Spearman menunjukkan bahwa parameter sulfat berkorelasi cukup kuat dan signifikan dengan Q (r=0,581, p=0,000), T (r=0,448, p=0,008), dan DHL (r=0,411, p=0,008) dan tidak berkorelasi dengan pH (r=-0,194, p=0,231) dan DO (r=-0,279, p=0,081). Analisis spasial dengan one-way ANOVA pada tingkat kepercayaan 95% menunjukkan perbedaan lokasi sampling tidak mengakibatkan perbedaan konsentrasi sulfat yang signifikan (p>0,05), kecuali antara titik S1 dengan S7 dan S8. Lebih lanjut, analisis spasial dengan menggunakan analisis klaster mengelompokkan titik sampling ke dalam dua klaster, yaitu klaster 1 yang terdiri dari titik S1 sampai titik S7 dan klaster 2 (S8) yang menggambarkan perubahan konsentrasi pencemar sulfat dari konsentrasi rendah ke konsentrasi sedang.Kata kunci: Batang Arau, sulfat, analisis korelasi, analisis variasi spasial


Genetika ◽  
2017 ◽  
Vol 49 (1) ◽  
pp. 247-258
Author(s):  
Deyana Hristova ◽  
Stoycho Metodiev ◽  
Vassil Nikolov ◽  
Dimitar Vassilev ◽  
Elena Todorovska

The aim of the study is focused on the design of a conservation sheep breeding programme for the studied autochthonous breeds based on SSR markers genetic variation analysis applied. Seven local Bulgarian autochthonous sheep breeds (Breznishka, Sofiiska, Copper-Red Shumenska, Karakachanska, Local Karnobatska, Blackhead Plevenska and Starozagorska) were differentiated using six microsatellite (SSR) markers, aiming to assess the genetic variation within and between breeds. Among the total of 96 identified alleles, eighteen population specific ones were detected across the all studied genotypes of 338 individuals, except in the Blackhead Plevenska sheep. All examined breeds indicated high level of genetic diversity, with an average of 0.792. The genetic differentiation between the examined sheep breeds was not significant and the values of genetic distances were relatively low. The analysis of molecular variances (AMOVA) showed low variation between the examined breeds (5.51%) in comparison to within population variation (94.49%). The greatest distance (0.643) was found between the populations Local Karnobatska and Starozagorska, while the smallest one (0.108), between the Copper-Red Shumenska and Karakachanska. The genetic distances calculated by Neighbour-Joining method, produced a phylogenetic tree which separates the investigated sheep breeds into two main clusters: one including Blackhead Plevenska Breznishka and Local Karnobatska, and the other one consisting of the four remaining breeds - Copper-Red Shumenska, Karakachanska, Sofiiska and Starozagorska sheep. The Factorial Correspondence Analysis (FCA) showed isolation of Local Karnobatska sheep and Starozagorska and an admixture of the other populations.


1991 ◽  
Vol 69 (10) ◽  
pp. 2261-2270 ◽  
Author(s):  
Laurie L. Consaul ◽  
Suzanne I. Warwick ◽  
John McNeill

The Polygonum lapathifolium complex consists of populations that are widely distributed in the Northern Hemisphere and that have been classified at different taxonomic levels. Allozyme data were used to test the current North American taxonomic status of members of the complex (including P. lapathifolium var. lapathifolium, P. lapathifolium var. salicifolium, and P. scabrum) and to verify diploidy in the P. lapathifolium complex and polyploid origins of the morphologically similar P. persicaria and P. pensylvanicum. Of the 15 enzyme systems surveyed in 50 populations of the complex, only 3 of the 23 loci (Acon, Lap, and Skdh) were polymorphic in the North American populations and a total of 6 loci in European populations. Fifteen multilocus genotypes were evident in the complex. Four genotypes (all with Lap-10.67 were exclusive to North American populations of P. lapathifolium, providing support for a North American element of the complex. Nine genotypes (all with Lap-10.63) were found in North American and European populations of P. scabrum, all European populations of the P. lapathifolium complex, and three populations of North American P. lapathifolium var. lapathifolium. Lap-10.67 was also found in the native tetraploid P. pensylvanicum, whereas Lap-10.63 was found in the introduced tetraploid P. persicaria. Genetic distances among populations did not support the current taxonomic divisions within the complex, nor did it support separate species status of P. scabrum. Allozyme data provided support for the allotetraploid origins of P. pensylvanicum and P. persicaria, with members of the P. lapathifolium complex as one of the parents of each. Key words: Polygonum lapathifolium, Polygonum scabrum, Polygonum pensylvanicum, Polygonum persicaria, allozymes.


2021 ◽  
Author(s):  
◽  
Joe Buchanan

<p>Genetic variation in Carpophyllum Greville and Cystophora J. Agardh (Fucales, Phaeophyceae) was investigated at a variety of scales. An extensive survey of mitochondrial spacer variation in Carpophyllum maschalocarpum from 32 populations around New Zealand shows strong population differentiation at relatively small scales (50–100 kilometres), but also pathways of long distance dispersal that connect populations over much greater distances. In addition, historical climate change appears to have restricted C. maschalocarpum to the northern North Island during the last glacial maximum, with subsequent southward range expansion revealed by low genetic diversity in southern populations. These results are consistent with limited dispersal at the gamete and zygote stage, expected in fucalean algae, but with occasional long distance dispersal by detached floating thalli. The genetic signature suggests these two modes of dispersal are decoupled. Internal Transcribed Spacers sequences show little differentiation between C. maschalocarpum and C. angustifolium, and hybridisation was found in several populations where these species are broadly sympatric. In the Bay of Plenty the two species had different ITS ribotypes, but most C. angustifolium specimens had a mitochondrial spacer haplotype that clustered with C. maschalocarpum haplotypes. This indicates mitochondrial introgression from C. maschalocarpum into C. angustifolium. In Northland species were difficult to separate by morphology or molecular markers, and some populations appear to be comprised entirely of hybrids. Genetic distances between different species of Cystophora are very variable, and in some cases intra-species distances are similar to interspecies distances. This is problematic for DNA barcoding methods that rely on thresholds between inter-species and intra-species genetic distances. In some (but not all) cases, the absence of molecular differentiation can be attributed to oversplitting of Cystophora species by morphological methods, and I synonymise C. congesta with C. retroflexa, and C. distenta with C. scalaris. These studies exemplify the difficulties of delimiting species in brown algae: Morphology is often misleading or uninformative; genetic differentiation of species is very variable and often low; and species’ histories show complex patterns of isolation and secondary contact. I argue for an explicitly historical concept of species, with species’ history included in species descriptions.</p>


2014 ◽  
Vol 7 (1) ◽  
pp. 30-39
Author(s):  
Billy Nguembock

Laniarius atroflavus is a sedentary member of the bush-shrike radiation (family Malaconotidae) and in our first paper, it appeared with strong divergence between its two subspecies. To confirm this divergence and leaning partially on our first obtained results, we investigated a genetic variation of the individuals of Laniarius atroflavus atroflavus (West Africa) and Laniarius atroflavus craterum (West Africa). For the genetic variation, we use two mitochondrial genes (ATPase6 and ND2) to calculate their genetic distances within the Laniarius ingroup and to explore their mutational differentiation. With our ATPase6 and ND2, a genetic distance of 1.66% and 2.14% has been respectively estimated between individuals of Laniarius atroflavus atroflavus (Cameroon Mountain) and Laniarius atroflavus craterum (Manenguba Mountain) whereas it was, for the same markers, of 0% and 0.57% respectively between specimens of Laniarius atroflavus craterum only caught in diverse parts of the Manenguba Mountain. For the mutational differentiation, a total of 34 different molecular characters have been observed with the two markers investigated between these two subspecies. Leaning on some dating results, it appears that Laniarius atroflavus atroflavus diverged from Laniarius atroflavus craterum during the Quaternary period and these dates correspond remarkably with those suggested for several polyphased volcanic activities noted in the Cameroon Volcanic Line. For these separate sedentary birds which are marked by their clinal size variation, measures of their wings as well as the variation of the color of their breast and belly, a possible secondary contact will certainly lead to reinforcement. Thus, we suggest resurrecting names Laniarius atroflavus Shelley, 1887 and Laniarius craterum Bates, 1926 for individuals of the populations hitherto referred as Laniarius atroflavus atroflavus and Laniarius atroflavus craterum respectively.


2008 ◽  
Vol 53 (1) ◽  
Author(s):  
Øivind Øines ◽  
Thomas Schram

AbstractTwo mitochondrial and one nuclear genetic marker were used to study the phylogenetic position of the two reported CO1-genotypes of Caligus elongatus in a group of closely related caligid parasites. Molecular analysis of the two mitochondrial genes (CO1 and 16S), indicate genetic distances of the two C. elongatus genotypes in the lower range of distances previously reported between other crustacean species, but higher than comparable reported within-species differences. Analyses of nuclear 18S sequences indicate no detectable differentiation between these genotypes, but may be due to expected differences in the resolution of these genetic markers. Investigation of two of three selected morphological characters reveals phenotypes supporting the division based on the molecular division. The species status on the two C. elongatus genotypes cannot be drawn conclusively, although the molecular and morphological data presented here suggests the presence of sibling species.


2021 ◽  
Author(s):  
◽  
Joe Buchanan

<p>Genetic variation in Carpophyllum Greville and Cystophora J. Agardh (Fucales, Phaeophyceae) was investigated at a variety of scales. An extensive survey of mitochondrial spacer variation in Carpophyllum maschalocarpum from 32 populations around New Zealand shows strong population differentiation at relatively small scales (50–100 kilometres), but also pathways of long distance dispersal that connect populations over much greater distances. In addition, historical climate change appears to have restricted C. maschalocarpum to the northern North Island during the last glacial maximum, with subsequent southward range expansion revealed by low genetic diversity in southern populations. These results are consistent with limited dispersal at the gamete and zygote stage, expected in fucalean algae, but with occasional long distance dispersal by detached floating thalli. The genetic signature suggests these two modes of dispersal are decoupled. Internal Transcribed Spacers sequences show little differentiation between C. maschalocarpum and C. angustifolium, and hybridisation was found in several populations where these species are broadly sympatric. In the Bay of Plenty the two species had different ITS ribotypes, but most C. angustifolium specimens had a mitochondrial spacer haplotype that clustered with C. maschalocarpum haplotypes. This indicates mitochondrial introgression from C. maschalocarpum into C. angustifolium. In Northland species were difficult to separate by morphology or molecular markers, and some populations appear to be comprised entirely of hybrids. Genetic distances between different species of Cystophora are very variable, and in some cases intra-species distances are similar to interspecies distances. This is problematic for DNA barcoding methods that rely on thresholds between inter-species and intra-species genetic distances. In some (but not all) cases, the absence of molecular differentiation can be attributed to oversplitting of Cystophora species by morphological methods, and I synonymise C. congesta with C. retroflexa, and C. distenta with C. scalaris. These studies exemplify the difficulties of delimiting species in brown algae: Morphology is often misleading or uninformative; genetic differentiation of species is very variable and often low; and species’ histories show complex patterns of isolation and secondary contact. I argue for an explicitly historical concept of species, with species’ history included in species descriptions.</p>


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