Molecular-genetic analyses of dispersal and breeding behaviour in the Australian termite Coptotermes lacteus: evidence for non-random mating in a swarm-dispersal mating system

2007 ◽  
Vol 55 (4) ◽  
pp. 219 ◽  
Author(s):  
Graham J. Thompson ◽  
Michael Lenz ◽  
Ross H. Crozier ◽  
Bernard J. Crespi

We used microsatellite DNA markers to infer the dispersal and breeding behaviour of Coptotermes lacteus, a termite whose large mounds are a conspicuous feature of Australia’s central east coast. We genotyped a subsample of neuter offspring for each of 38 colonies sampled over two spatially separated populations, one in a natural forest and the other in an exotic radiata pine plantation. All colonies showed offspring genotype frequencies consistent with a single reproductive pair. This result confirms that stable monogamy is the normal breeding arrangement for this species and that multi-reproductive colonies are rare. The two study populations were significantly differentiated and the distance separating them (~150 km) is therefore an effective constraint on gene flow. The populations themselves, however, were not noticeably subdivided above the level of colony. This lack of within-population viscosity is unexpected for weakly dispersing species and suggests that local gamete dispersal is in fact quite effective in C. lacteus. Nonetheless, dispersing sexuals do not appear to mate randomly. Instead, all four microsatellite loci are deficient in heterozygotes, indicating that populations are substantially inbred, irrespective of habitat. Evidence from hierarchical F-statistics, spatial genetic autocorrelation and relatedness calculations suggests that deviations from Hardy–Weinberg equilibrium may result from either a preference for non-sibling relatives over totally unrelated mates, or from random mating with viscosity – though evidence for the latter hypothesis was not detected. These findings suggest that swarm-dispersal mating systems, usually considered to produce outbreeding and panmixia, can instead involve a notable degree of non-random mating.

1996 ◽  
Vol 74 (11) ◽  
pp. 1852-1859 ◽  
Author(s):  
Matthew A. Gitzendanner ◽  
Gayle E. Dupper ◽  
Eleanor E. White ◽  
Brett M. Foord ◽  
Paul D. Hodgskiss ◽  
...  

Lack of genetic markers has hindered the study of the mating system of Cronartium ribicola, an exotic forest pathogen Meeting natural and cultivated white pines throughout North America. Isozymes, randomly amplified polymorphic DNA (RAPDs), and restriction length polymorphisms (RFLPs) were used to study the mating system of this rust. Heterozygosity (outcrossing) in diploid telia was demonstrated by analysis of cultures derived from the meiotic products (basidiospores) of individual telia. Families of basidiospores cultured from single telia were used to test for Mendelian segregation and for conformance of loci to Hardy–Weinberg equilibrium. A total of 18 polymorphic loci were identified with the three marker systems. All except for three RAPD loci showed Mendelian segregation in the single-telium families. To quantify the level of outcrossing, gene and genotype frequencies were calculated for families from a single population. Up to 24 families were surveyed with isozymes, 14 with RAPDs, and 18 with RFLPs. Except for one isozyme locus (MPI) in one sample, all 14 loci tested with these families were in Hardy–Weinberg equilibrium, indicating random mating. Further studies, with a different sample from the same population, showed all three isozyme loci to be in Hardy–Weinberg equilibrium. The three marker systems were consistent as to the amount of variation detected. Resistance selection and breeding programs must consider the implications of genetic recombination that outcrossing affords the rust. Keywords: isozymes, RAPDs, RFLPs, Hardy–Weinberg equilibrium, white pine blister rust.


2019 ◽  
Author(s):  
Daniel Backenroth ◽  
Shai Carmi

AbstractGenome-wide scans for deviations from Hardy-Weinberg equilibrium (HWE) are commonly applied to detect genotyping errors. In contrast to the autosomes, genotype frequencies on the X chromosome do not reach HWE within a single generation. Instead, if allele frequencies in males and females initially differ, they oscillate for a few generations towards equilibrium. Several populations world-wide have experienced recent sex-biased admixture, namely, their male and female founders differed in ancestry and thus in allele frequencies. Sex-biased admixture makes testing for HWE difficult on X, because deviations are naturally expected, even under random mating post-admixture and error-free genotyping. In this paper, we develop a likelihood ratio test and a χ2 test that detect deviations from HWE on X while allowing for natural deviations due to sex-biased admixture. We demonstrate by simulations that our tests are powerful for detecting deviations due to non-random mating, while at the same time they do not reject the null under historical sex-biased admixture and random mating thereafter. We also demonstrate that when applied to 1000 Genomes project populations (e.g., as a quality control step), our tests reject fewer SNPs (among those showing frequency differences between the sexes) than other tests.


1987 ◽  
Vol 49 (1) ◽  
pp. 69-70 ◽  
Author(s):  
Alan R. Templeton

SummaryThe average effect and average excess both measure the phenotypic effects of gametes in a population. A matrix notation is introduced that provides a general analytical solution for the average effects at a single locus with k alleles that can be solved for any population regardless of its genotype frequencies. This same notation also provides an easy way of deriving and generalizing to k alleles the well-known relationships between average effects and average excesses that exist under random-mating and regular deviations from Hardy–Weinberg equilibrium due to inbreeding.


1996 ◽  
Vol 68 (3) ◽  
pp. 249-257 ◽  
Author(s):  
Jinliang Wang

SummaryFor a finite diploid population with no mutation, migration and selection, equations for the deviation of observed genotype frequencies from Hardy–Weinberg proportions are derived in this paper for monoecious species and for autosomal and sex-linked loci in dioecious species. It is shown that the genotype frequency deviation in finite random-mating populations results from the difference between the gene frequencies of male and female gametes, which is determined by two independent causes: the gene frequency difference between male and female parents and the sampling error due to the finite number of offspring. Previous studies have considered only one of the causes and the equations derived by previous authors are applicable only in the special case of random selection. The general equations derived here for both causes incorporate the variances and covariances of family size and thus they reduce to previous equations for random selection. Stochastic simulations are run to check the predictions from different formulae. Non-random mating and variation in census size are considered and the applications of the derived formulae are exemplified.


2017 ◽  
Vol 79 (4) ◽  
pp. 309-312
Author(s):  
Laura A. Schoenle ◽  
Matthew Thomas

Introducing Hardy-Weinberg equilibrium into the high school or college classroom can be difficult because many students struggle with the mathematical formalism of the Hardy-Weinberg equations. Despite the potential difficulties, incorporating Hardy-Weinberg into the curriculum can provide students with the opportunity to investigate a scientific theory using data and integrate across the disciplines of biology and mathematics. We present a geometric way to interpret and visualize Hardy-Weinberg equilibrium, allowing students to focus on the core ideas without algebraic baggage. We also introduce interactive applets that draw on the distributive property of mathematics to allow students to experiment in real time. With the applets, students can observe the effects of changing allele frequencies on genotype frequencies in a population at Hardy-Weinberg equilibrium. Anecdotally, we found use of the geometric interpretation led to deeper student understanding of the concepts and improved the students' ability to solve Hardy-Weinberg-related problems. Students can use the ideas and tools provided here to draw connections between the biology and mathematics, as well as between algebra and geometry.


2011 ◽  
Vol 93 (2) ◽  
pp. 105-114 ◽  
Author(s):  
LEEYOUNG PARK

SummaryIn order to estimate the effective population size (Ne) of the current human population, two new approaches, which were derived from previous methods, were used in this study. One is based on the deviation from linkage equilibrium (LE) between completely unlinked loci in different chromosomes and another is based on the deviation from the Hardy–Weinberg Equilibrium (HWE). When random mating in a population is assumed, genetic drifts in population naturally induce linkage disequilibrium (LD) between chromosomes and the deviation from HWE. The latter provides information on the Ne of the current population, and the former provides the same when the Ne is constant. If Ne fluctuates, recent Ne changes are reflected in the estimates based on LE, and the comparison between two estimates can provide information regarding recent changes of Ne. Using HapMap Phase III data, the estimates were varied from 622 to 10 437, depending on populations and estimates. The Ne appeared to fluctuate as it provided different estimates for each of the two methods. These Ne estimates were found to agree approximately with the overall increment observed in recent human populations.


2019 ◽  
Vol 2019 ◽  
pp. 1-8
Author(s):  
Vitalina Bashynska ◽  
Alexander Koliada ◽  
Kateryna Murlanova ◽  
Oksana Zahorodnia ◽  
Yuliia Borysovych ◽  
...  

Tobacco smoking is known to be a strong risk factor for developing many diseases. The development and severity of smoking dependence results from interaction of environmental and lifestyle factors, psycho-emotional predispositions, and also from genetic susceptibility. In present study, we investigated polymorphic variants in genes contributed to nicotine dependence, as well as to increased impulsivity, known to be an important risk factor for substance use disorders, in Ukraine population. The genotype frequencies at CYP2A6, DNMT3B, DRD2, HTR2A, COMT, BDNF, GABRA2, CHRNA5, and DAT1 polymorphisms were determined in 171 Ukraine residents, and these data were compared with data for several other European populations and main ethnic groups. It has been found that genotype frequencies for all studied loci are in Hardy-Weinberg equilibrium in the Ukrainian population and correspond to the respective frequencies in European populations. These findings suggest a similar impact of these loci on nicotine dependence in Ukraine. Further studies with larger sample sizes are, however, needed to draw firm conclusions about the effect size of these polymorphisms.


Blood ◽  
2008 ◽  
Vol 112 (11) ◽  
pp. 5466-5466
Author(s):  
Tyler Davi d Hutchinson ◽  
Yuhua Song ◽  
Kevin Trainor ◽  
Ghazala Hashmi

Abstract Background: Alloimmunization against Human Platelet Antigens (HPA) is associated with Neonatal Alloimmune Thrombocytopenia (NAIT), post-transfusion purpura and refractoriness for platelet transfusion. A flexible BeadChip™ design was developed to simultaneously detect 22 platelet antigens, including HPA-1, and used to assay over 1,000 random blood donors from across the United States. Methods: Samples from 19 labs/centers from across the country were assayed for 11 HPA loci (HPA-1 through 9, 11 and 15) using the BioArray Solutions HPA Assay. Each locus was independently assessed for Hardy-Weinberg Equilibrium. Results: Allele and genotype frequencies for each locus were reported. Platelet antigens HPA-2 through HPA-9, HPA-11 and HPA-15 were all found to be in Hardy-Weinberg Equilibrium with a Chi-Squared value of <3.84 (1 degree of freedom, 5% confidence interval). HPA-1, however, did not exhibit Hardy-Weinberg Equilibrium yielding a Chi-Squared value of 43.4. Conclusions: After reaffirming there was no sampling preference by inclusion of a second blinded random group, it was acknowledged that HPA-1 did not conform to a Mendelian distribution of alleles. The lower incidence of heterozygote HPA-1 individuals may lend credence to the recent finding by Ivanov et al (Akush Ginekol, 2007) linking the polymorphism in GPIIIa that is responsible for the HPA-1 antigen with embryo implantation failure. Further research may help elucidate the causes behind the HPA-1 disequilibrium and how much implantation failure impacts HPA-1 frequencies.


2013 ◽  
Vol 2013 ◽  
pp. 1-5 ◽  
Author(s):  
S. A. Zavaleta-Muñiz ◽  
B. T. Martín-Márquez ◽  
L. Gonzalez-Lopez ◽  
N. G. Gonzalez-Montoya ◽  
M. L. Díaz-Toscano ◽  
...  

Objective. There is a lack of information about the genotype frequencies of IL-6 −174G/C and −572G/C polymorphisms in Mexicans with rheumatoid arthritis (RA). Therefore, the aim of this study was to evaluate the association of the IL-6 −174G/C and −572G/C polymorphisms in Mexican mestizo with RA.Methods. We included 137 patients with RA and 102 healthy controls. Patients were assessed for clinical characteristics. IL-6 −174G/C and −572G/C polymorphisms were genotyped using PCR-RFLP analysis. Allele and genotype frequencies and the Hardy-Weinberg equilibrium were computed. Odds ratios (ORs) were computed to identify the risk for RA associated with the presence of GG genotype in comparison with the GC or CC genotypes.Results. The genotype −174GG occurred at a higher frequency in cases and controls (77.4% versus 78.4%,P=0.845). We found similar results for the genotype −572GG (54% in patients versus 60.8% in controls,P=0.295).Conclusions. This is the first study to evaluate the association of −174G/C and −572G/C polymorphisms of the IL-6 gene with RA in Mexican mestizo patients. These two polymorphisms were not associated with RA in the studied sample. Additional studies are required to evaluate if these IL-6 polymorphisms have relevance to the development of more severe disease.


1991 ◽  
Vol 21 (5) ◽  
pp. 707-712 ◽  
Author(s):  
Glenn R. Furnier ◽  
Michael Stine ◽  
Carl A. Mohn ◽  
Merlise A. Clyde

Variation in height at ages 9 and 19 years and at six polymorphic allozyme loci was examined for 22 seed sources (populations) in a range-wide white spruce (Piceaglauca (Moench) Voss) provenance test planted in Minnesota. There were strong differences among populations for height, with 48.0 and 54.1 % of the genetic variation for height at ages 9 and 19, respectively, due to differences among populations. Mean observed and expected estimates of allozyme heterozygosity were 0.306 and 0.290, respectively, with little deviation from genotype frequencies expected under a Hardy–Weinberg equilibrium. In contrast with the height data, an average of only 3.8% of this variation was due to differences among populations. Geographic trends were apparent in the height data, with northern and western sources performing the poorest. Neither univariate nor multivariate analyses revealed any geographic trends in the allozyme data. The very different distributions for height and allozyme variation suggest that evolutionary forces are acting in different ways on the genes controlling these traits, and that allozyme data will have limited value in developing sampling strategies for gene conservation programs, where the preservation of germ plasm adapted to many sites throughout a species range is important.


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