Geographic patterns of variation in allozymes and height growth in white spruce

1991 ◽  
Vol 21 (5) ◽  
pp. 707-712 ◽  
Author(s):  
Glenn R. Furnier ◽  
Michael Stine ◽  
Carl A. Mohn ◽  
Merlise A. Clyde
Keyword(s):  
White Spruce ◽  
Allozyme Variation ◽  
Allozyme Data ◽  
Evolutionary Forces ◽  
Seed Sources ◽  
Genotype Frequencies ◽  
Provenance Test ◽  
Hardy Weinberg Equilibrium ◽  
Allozyme Loci ◽  
Height Data

Variation in height at ages 9 and 19 years and at six polymorphic allozyme loci was examined for 22 seed sources (populations) in a range-wide white spruce (Piceaglauca (Moench) Voss) provenance test planted in Minnesota. There were strong differences among populations for height, with 48.0 and 54.1 % of the genetic variation for height at ages 9 and 19, respectively, due to differences among populations. Mean observed and expected estimates of allozyme heterozygosity were 0.306 and 0.290, respectively, with little deviation from genotype frequencies expected under a Hardy–Weinberg equilibrium. In contrast with the height data, an average of only 3.8% of this variation was due to differences among populations. Geographic trends were apparent in the height data, with northern and western sources performing the poorest. Neither univariate nor multivariate analyses revealed any geographic trends in the allozyme data. The very different distributions for height and allozyme variation suggest that evolutionary forces are acting in different ways on the genes controlling these traits, and that allozyme data will have limited value in developing sampling strategies for gene conservation programs, where the preservation of germ plasm adapted to many sites throughout a species range is important.

Allozyme Variation and Population Substructuring in the Caucasian Ground Lizards Lacerta derjugini and Lacerta praticola

2011 ◽  
Vol 4 (2) ◽  
pp. 115-119 ◽  
Author(s):  
Ross D. MacCulloch ◽  
Ilya S. Darevsky ◽  
Robert W. Murphy ◽  
Jinzhong Fu
Keyword(s):  
Genetic Diversity ◽  
Allozyme Variation ◽  
Close Proximity ◽  
Geographic Separation ◽  
Population Substructuring ◽  
Allozyme Loci ◽  
Two Populations

Genetic diversity at 35 allozyme loci was surveyed in Lacerta derjugini (3 populations) and L. praticola (2 populations). Indices of variability were consistent with those found in other Caucasian Lacerta. There was little genetic substructuring between two populations of L. praticola despite considerable geographic separation. Conversely, populations of L. derjugini in close proximity to one another exhibited considerable substructuring.

scholarly journals A red pine provenance test in northwestern Ontario: 48-year results

2010 ◽  
Vol 86 (3) ◽  
pp. 348-353 ◽  
Author(s):  
Ali A Rahi ◽  
Colin Bowling ◽  
Dale Simpson
Keyword(s):  
Significant Variation ◽  
Pinus Resinosa ◽  
Red Pine ◽  
Provenance Trial ◽  
Maritime Provinces ◽  
Poor Growth ◽  
Breast Height ◽  
Seed Sources ◽  
Northwestern Ontario ◽  
Provenance Test

Survival, total height and diameter at breast height (DBH) were measured in the fall of 2005 in a 48-year-old red pine (Pinus resinosa Ait.) provenance trial growing in northwestern Ontario. There was significant variation in both height and diameter among the 23 provenances. Generally, westerly provenances performed well while those from the Maritime Provinces exhibited relatively poor growth. Considering that the plantation is at the northern biological range of red pine, survival was high, averaging 96% after 48 years. Provenances with the best growth rates exceeded a volume of 420 m3 ha-1. Some provenances from Minnesota and Wisconsin as well as Fort Frances, Ontario exhibited superior growth and should be considered as seed sources for future planting programs in northwestern Ontario. Key words: red pine, provenance test, survival, diameter, height, volume, Northwestern Ontario

scholarly journals POPULATION GENETIC CONSEQUENCES OF FEEDING HABITS IN SOME FOREST LEPIDOPTERA

Genetics ◽  
1979 ◽  
Vol 92 (3) ◽  
pp. 1005-1021
Author(s):  
Charles Mitter ◽  
Douglas J Futuyma
Keyword(s):  
Genetic Variation ◽  
Environmental Heterogeneity ◽  
Feeding Habits ◽  
Functional Relation ◽  
Allozyme Variation ◽  
Unexpected Result ◽  
Polymorphic Loci ◽  
Allozyme Loci ◽  
Race Formation ◽  
Relationship Of

ABSTRACT By surveying variation at allozyme loci in several phytophagous lepidopteran species (Geometridae), we have tested two hypotheses about the relationship of genetic variation to environmental heterogeneity: (1) that allozyme polymorphisms may exist because of associations between genotypes and "niches" (different host plants, in this instance), and (2) that the overall genetic variation of a species is correlated with environmental heterogeneity (or breadth of the species' overall ecological niche) .—Genetic differentiation among samples of oligophagous or polyphagous species taken from different host species was observed in one of three species, at only one of seven polymorphic loci. The data thus provide no evidence for pronounced genetic sub-structuring, or "host race" formation in these sexually reproducing species, although host plant-genotype associations in a parthenogenetic moth give evidence of the potential for diversifying selection.—In a comparison of allozyme variation in polyphagous ("generalized") and oligophagous ("specialized") species, heterozygosity appeared to be higher in specialized species, at all polymorphic loci but one. I t is possible that this unexpected result arises from a functional relation between breadth of diet and genetic variation.

Solving Hardy-Weinberg with Geometry: An Integration of Biology and Math

2017 ◽  
Vol 79 (4) ◽  
pp. 309-312
Author(s):  
Laura A. Schoenle ◽  
Matthew Thomas
Keyword(s):  
Scientific Theory ◽  
Geometric Interpretation ◽  
Student Understanding ◽  
Weinberg Equilibrium ◽  
The Core ◽  
Distributive Property ◽  
Genotype Frequencies ◽  
Hardy Weinberg Equilibrium ◽  
Using Data ◽  
And Mathematics

Introducing Hardy-Weinberg equilibrium into the high school or college classroom can be difficult because many students struggle with the mathematical formalism of the Hardy-Weinberg equations. Despite the potential difficulties, incorporating Hardy-Weinberg into the curriculum can provide students with the opportunity to investigate a scientific theory using data and integrate across the disciplines of biology and mathematics. We present a geometric way to interpret and visualize Hardy-Weinberg equilibrium, allowing students to focus on the core ideas without algebraic baggage. We also introduce interactive applets that draw on the distributive property of mathematics to allow students to experiment in real time. With the applets, students can observe the effects of changing allele frequencies on genotype frequencies in a population at Hardy-Weinberg equilibrium. Anecdotally, we found use of the geometric interpretation led to deeper student understanding of the concepts and improved the students' ability to solve Hardy-Weinberg-related problems. Students can use the ideas and tools provided here to draw connections between the biology and mathematics, as well as between algebra and geometry.

Loblolly Pine Provenance Test in Southern Arkansas 25th Year Results

1983 ◽  
Vol 7 (2) ◽  
pp. 71-75 ◽  
Author(s):  
O. O. Wells ◽  
C. C. Lambeth
Keyword(s):  
Pinus Taeda ◽  
Loblolly Pine ◽  
Gulf Coast ◽  
Seed Sources ◽  
Potential Gain ◽  
Provenance Test ◽  
Pinus Taeda L ◽  
Forest Managers

Abstract Trees from some eastern seed sources of loblolly pine (Pinus taeda L.) average 8 feet taller than local Arkansas trees after 25 years in southern Arkansas plantings. Trees from most of the range appear well adapted to the climate of southern Arkansas. Only trees from near the Gulf Coast are obviously poorly adapted. Forest managers should weigh this substantial, potential gain carefully against possible risk when choosing seed sources for planting in and near southern Arkansas.

scholarly journals Prevalence of Some Genetic Risk Factors for Nicotine Dependence in Ukraine

2019 ◽  
Vol 2019 ◽  
pp. 1-8
Author(s):  
Vitalina Bashynska ◽  
Alexander Koliada ◽  
Kateryna Murlanova ◽  
Oksana Zahorodnia ◽  
Yuliia Borysovych ◽  
...  
Keyword(s):  
Risk Factors ◽  
Risk Factor ◽  
Nicotine Dependence ◽  
Genetic Risk ◽  
Strong Risk Factor ◽  
Genotype Frequencies ◽  
Hardy Weinberg Equilibrium ◽  
Polymorphic Variants ◽  
Larger Sample ◽  
European Populations

Tobacco smoking is known to be a strong risk factor for developing many diseases. The development and severity of smoking dependence results from interaction of environmental and lifestyle factors, psycho-emotional predispositions, and also from genetic susceptibility. In present study, we investigated polymorphic variants in genes contributed to nicotine dependence, as well as to increased impulsivity, known to be an important risk factor for substance use disorders, in Ukraine population. The genotype frequencies at CYP2A6, DNMT3B, DRD2, HTR2A, COMT, BDNF, GABRA2, CHRNA5, and DAT1 polymorphisms were determined in 171 Ukraine residents, and these data were compared with data for several other European populations and main ethnic groups. It has been found that genotype frequencies for all studied loci are in Hardy-Weinberg equilibrium in the Ukrainian population and correspond to the respective frequencies in European populations. These findings suggest a similar impact of these loci on nicotine dependence in Ukraine. Further studies with larger sample sizes are, however, needed to draw firm conclusions about the effect size of these polymorphisms.

Seasonal variation and clonal selection in cyclically parthenogenetic rose aphids (Macrosiphum rosae)

1985 ◽  
Vol 27 (2) ◽  
pp. 224-232 ◽  
Author(s):  
L. R. Rhomberg ◽  
S. Joseph ◽  
R. S. Singh
Keyword(s):  
Genetic Variation ◽  
Seasonal Variation ◽  
Clonal Selection ◽  
Natural Populations ◽  
Allozyme Variation ◽  
Polymorphic Loci ◽  
Esterase Loci ◽  
Allozyme Loci ◽  
Macrosiphum Rosae ◽  
Asexual Cycle

Patterns of geographic and seasonal genetic variation were assessed in natural populations of cyclically parthenogenetic rose aphids Macrosiphum rosae (L.). Nine populations were studied for a red–green colour morph and 30 allozyme loci (20 coding for enzymes and 10 for abundant proteins). Genetic variation was found at 5 of 20 enzyme loci (20%); all 10 abundant proteins proved monomorphic. The average heterozygosity was 4.3%. At some polymorphic loci genotypic frequencies showed significant deviations from Hardy–Weinberg proportions. Six local populations from Hamilton, Ontario, were studied for seasonal variation at the colour locus and at two polymorphic esterase loci (Est-2 and Est-4). All three loci showed large changes in genotypic frequencies over the season during the asexual cycle, but only for Est-4 were changes consistent among populations. This locus undergoes a regular seasonal cycle, the directional changes during the asexual phase presumably being balanced by changes during the sexual phase. The frequencies of three-locus genotypes within each locality fluctuated dramatically over the course of a season, reflecting the domination of local infestations by a few particularly successful clones. We speculate that because of such clonal competition followed by extensive migration, much of the selectively neutral variation is purged from aphid populations. The remaining polymorphic loci, which are mostly di- or tri-allelic, are subject to balancing natural selection at the gene or at closely linked loci. The Est-4 in rose aphids is an example of such a selectively maintained polymorphism.Key words: aphids, allozyme variation, seasonal variation, parthenogenesis, clonal selection, population structure.

Genetics of Cronartium ribicola. III. Mating System

1996 ◽  
Vol 74 (11) ◽  
pp. 1852-1859 ◽  
Author(s):  
Matthew A. Gitzendanner ◽  
Gayle E. Dupper ◽  
Eleanor E. White ◽  
Brett M. Foord ◽  
Paul D. Hodgskiss ◽  
...  
Keyword(s):  
Mating System ◽  
Genetic Recombination ◽  
Random Mating ◽  
Cronartium Ribicola ◽  
White Pine Blister Rust ◽  
Mendelian Segregation ◽  
Weinberg Equilibrium ◽  
Forest Pathogen ◽  
Genotype Frequencies ◽  
Hardy Weinberg Equilibrium

Lack of genetic markers has hindered the study of the mating system of Cronartium ribicola, an exotic forest pathogen Meeting natural and cultivated white pines throughout North America. Isozymes, randomly amplified polymorphic DNA (RAPDs), and restriction length polymorphisms (RFLPs) were used to study the mating system of this rust. Heterozygosity (outcrossing) in diploid telia was demonstrated by analysis of cultures derived from the meiotic products (basidiospores) of individual telia. Families of basidiospores cultured from single telia were used to test for Mendelian segregation and for conformance of loci to Hardy–Weinberg equilibrium. A total of 18 polymorphic loci were identified with the three marker systems. All except for three RAPD loci showed Mendelian segregation in the single-telium families. To quantify the level of outcrossing, gene and genotype frequencies were calculated for families from a single population. Up to 24 families were surveyed with isozymes, 14 with RAPDs, and 18 with RFLPs. Except for one isozyme locus (MPI) in one sample, all 14 loci tested with these families were in Hardy–Weinberg equilibrium, indicating random mating. Further studies, with a different sample from the same population, showed all three isozyme loci to be in Hardy–Weinberg equilibrium. The three marker systems were consistent as to the amount of variation detected. Resistance selection and breeding programs must consider the implications of genetic recombination that outcrossing affords the rust. Keywords: isozymes, RAPDs, RFLPs, Hardy–Weinberg equilibrium, white pine blister rust.

Identification of the Great Lakes Quagga Mussel as Dreissena bugensis from the Dnieper River, Ukraine, on the Basis of Allozyme Variation

1994 ◽  
Vol 51 (7) ◽  
pp. 1485-1489 ◽  
Author(s):  
Adrian P. Spidle ◽  
J. Ellen Marsden ◽  
Bernie May
Keyword(s):  
Great Lakes ◽  
Lake Erie ◽  
Allozyme Variation ◽  
Morphological Characters ◽  
The Black Sea ◽  
Quagga Mussel ◽  
Allozyme Data ◽  
Dreissena Bugensis ◽  
The North ◽  
Deep Waters

The discovery of a second dreissenid species, the quagga mussel, in the Great Lakes in 1991 prompted a search for its identity. We have identified the North American quagga mussel as Dreissena bugensis Andrusov on the basis of allozyme data and morphological characters. Further, a phenotypically distinct form of the quagga mussel found in Lakes Erie and Ontario also matches the electrophoretic profiles of the typical Lake Ontario quagga and European D. bugensis. We confirm that the white "profunda" mussel found in the deep waters of Lake Erie is a phenotype of the quagga mussel, and we conclude that the quagga mussel is D. bugensis which has been introduced from the Black Sea drainage of Ukraine.

Disequilibrium of Human Platelet Antigen 1 (HPA-1) in U.S. Population

Blood ◽  
2008 ◽  
Vol 112 (11) ◽  
pp. 5466-5466
Author(s):  
Tyler Davi d Hutchinson ◽  
Yuhua Song ◽  
Kevin Trainor ◽  
Ghazala Hashmi
Keyword(s):  
Human Platelet ◽  
Embryo Implantation ◽  
The United States ◽  
Implantation Failure ◽  
Random Group ◽  
Weinberg Equilibrium ◽  
Genotype Frequencies ◽  
Chi Squared ◽  
Human Platelet Antigen ◽  
Hardy Weinberg Equilibrium

Abstract Background: Alloimmunization against Human Platelet Antigens (HPA) is associated with Neonatal Alloimmune Thrombocytopenia (NAIT), post-transfusion purpura and refractoriness for platelet transfusion. A flexible BeadChip™ design was developed to simultaneously detect 22 platelet antigens, including HPA-1, and used to assay over 1,000 random blood donors from across the United States. Methods: Samples from 19 labs/centers from across the country were assayed for 11 HPA loci (HPA-1 through 9, 11 and 15) using the BioArray Solutions HPA Assay. Each locus was independently assessed for Hardy-Weinberg Equilibrium. Results: Allele and genotype frequencies for each locus were reported. Platelet antigens HPA-2 through HPA-9, HPA-11 and HPA-15 were all found to be in Hardy-Weinberg Equilibrium with a Chi-Squared value of <3.84 (1 degree of freedom, 5% confidence interval). HPA-1, however, did not exhibit Hardy-Weinberg Equilibrium yielding a Chi-Squared value of 43.4. Conclusions: After reaffirming there was no sampling preference by inclusion of a second blinded random group, it was acknowledged that HPA-1 did not conform to a Mendelian distribution of alleles. The lower incidence of heterozygote HPA-1 individuals may lend credence to the recent finding by Ivanov et al (Akush Ginekol, 2007) linking the polymorphism in GPIIIa that is responsible for the HPA-1 antigen with embryo implantation failure. Further research may help elucidate the causes behind the HPA-1 disequilibrium and how much implantation failure impacts HPA-1 frequencies.

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