scholarly journals Simultaneous cryo X-ray ptychographic and fluorescence microscopy of green algae

2015 ◽  
Vol 112 (8) ◽  
pp. 2314-2319 ◽  
Author(s):  
Junjing Deng ◽  
David J. Vine ◽  
Si Chen ◽  
Youssef S. G. Nashed ◽  
Qiaoling Jin ◽  
...  

Trace metals play important roles in normal and in disease-causing biological functions. X-ray fluorescence microscopy reveals trace elements with no dependence on binding affinities (unlike with visible light fluorophores) and with improved sensitivity relative to electron probes. However, X-ray fluorescence is not very sensitive for showing the light elements that comprise the majority of cellular material. Here we show that X-ray ptychography can be combined with fluorescence to image both cellular structure and trace element distribution in frozen-hydrated cells at cryogenic temperatures, with high structural and chemical fidelity. Ptychographic reconstruction algorithms deliver phase and absorption contrast images at a resolution beyond that of the illuminating lens or beam size. Using 5.2-keV X-rays, we have obtained sub–30-nm resolution structural images and ∼90-nm–resolution fluorescence images of several elements in frozen-hydrated green algae. This combined approach offers a way to study the role of trace elements in their structural context.

1998 ◽  
Vol 524 ◽  
Author(s):  
M. Naghedolfeizi; ◽  
J.-S. Chung ◽  
G. E. Ice ◽  
W. B. Yun ◽  
Z. Cai ◽  
...  

ABSTRACTTRISO fuel particles contain a small kernel of nuclear fuel encapsulated by alternating layers of C and a barrier layer of SiC. The TRISO fuel particle is used in an advanced nuclear fuel where the SiC shell provides the primary barrier for radioactive elements in the kernel. The performance of this barrier is key to containment. We have used x-ray fluorescence microtomography to measure the trace element distribution in a SiC shell. Prior to our measurements the nuclear fuel and C layers were leached from the particle. The shell was then encapsulated by kapton tape to simplify handling. The shell was mounted on a glass fiber and measurements were made with an ∼1 x3 ωm2 x-ray probe on beamline 2-ID at the APS. The distribution of trace elements in the SIC shell was reconstructed after correcting the data for artifacts arising from absorption and scattering off the kapton tape. The observed trace elements are distributed in small <1ωm regions through the SiC shell. The trace elements can be attributed to radiation enhanced diffusion of elements in the kernel or to trace elements introduced during fabrication. X-ray fluorescence microtomography is an ideal tool for this work because it is a penetrating nondestructive probe sensitive to trace elements in a low Z matrix and because it provides a picture of the elemental distribution in the shell.


Author(s):  
L. T. Germinario

Understanding the role of metal cluster composition in determining catalytic selectivity and activity is of major interest in heterogeneous catalysis. The electron microscope is well established as a powerful tool for ultrastructural and compositional characterization of support and catalyst. Because the spatial resolution of x-ray microanalysis is defined by the smallest beam diameter into which the required number of electrons can be focused, the dedicated STEM with FEG is the instrument of choice. The main sources of errors in energy dispersive x-ray analysis (EDS) are: (1) beam-induced changes in specimen composition, (2) specimen drift, (3) instrumental factors which produce background radiation, and (4) basic statistical limitations which result in the detection of a finite number of x-ray photons. Digital beam techniques have been described for supported single-element metal clusters with spatial resolutions of about 10 nm. However, the detection of spurious characteristic x-rays away from catalyst particles produced images requiring several image processing steps.


Author(s):  
D. A. Carpenter ◽  
Ning Gao ◽  
G. J. Havrilla

A monolithic, polycapillary, x-ray optic was adapted to a laboratory-based x-ray microprobe to evaluate the potential of the optic for x-ray micro fluorescence analysis. The polycapillary was capable of collecting x-rays over a 6 degree angle from a point source and focusing them to a spot approximately 40 µm diameter. The high intensities expected from this capillary should be useful for determining and mapping minor to trace elements in materials. Fig. 1 shows a sketch of the capillary with important dimensions.The microprobe had previously been used with straight and with tapered monocapillaries. Alignment of the monocapillaries with the focal spot was accomplished by electromagnetically scanning the focal spot over the beveled anode. With the polycapillary it was also necessary to manually adjust the distance between the focal spot and the polycapillary.The focal distance and focal spot diameter of the polycapillary were determined from a series of edge scans.


2014 ◽  
Vol 8 (1) ◽  
pp. 35-48 ◽  
Author(s):  
Emmanuel Wafo ◽  
Véronique Risoul ◽  
Thérèse Schembri ◽  
Véronique Lagadec ◽  
Frank Dhermain ◽  
...  

The main objective of this study was to evaluate the contamination by mercury (Hg), methylmercury (Me-Hg), cadmium (Cd), selenium (Se), zinc (Zn), copper (Cu), iron (Fe) and manganese (Mn) in dolphins stranded on the French Mediterranean coast. The distributions of these contaminants in the organs of dolphins have also been studied. Overall, contamination levels varied according to the following sequence: liver > kidney > lung > muscle, except for cadmium (kidney > liver > lung > muscle). Size and sex of animals were also considered. Young dolphins were less impacted with trace elements than adults, except for copper. Among the studied parameters, the most important appeared to be the size of mammals. In addition, in the case of mercury and selenium, the sex of mammals seemed to be also relevant. The correlations between the concentrations of trace elements suggest the existence of detoxification processes. Since 1990s, using dolphins for tracing marine pollution, a slight reduction in the burden of the considered trace elements could be noted.


2021 ◽  
Vol 11 (4) ◽  
pp. 1446
Author(s):  
Jacopo Orsilli ◽  
Anna Galli ◽  
Letizia Bonizzoni ◽  
Michele Caccia

Among the possible variants of X-Ray Fluorescence (XRF), applications exploiting scanning Macro-XRF (MA-XRF) are lately widespread as they allow the visualization of the element distribution maintaining a non-destructive approach. The surface is scanned with a focused or collimated X-ray beam of millimeters or less: analyzing the emitted fluorescence radiation, also elements present below the surface contribute to the elemental distribution image obtained, due to the penetrative nature of X-rays. The importance of this method in the investigation of historical paintings is so obvious—as the elemental distribution obtained can reveal hidden sub-surface layers, including changes made by the artist, or restorations, without any damage to the object—that recently specific international conferences have been held. The present paper summarizes the advantages and limitations of using MA-XRF considering it as an imaging technique, in synergy with other hyperspectral methods, or combining it with spot investigations. The most recent applications in the cultural Heritage field are taken into account, demonstrating how obtained 2D-XRF maps can be of great help in the diagnostic applied on Cultural Heritage materials. Moreover, a pioneering analysis protocol based on the Spectral Angle Mapper (SAM) algorithm is presented, unifying the MA-XRF standard approach with punctual XRF, exploiting information from the mapped area as a database to extend the comprehension to data outside the scanned region, and working independently from the acquisition set-up. Experimental application on some reference pigment layers and a painting by Giotto are presented as validation of the proposed method.


Clay Minerals ◽  
1969 ◽  
Vol 8 (2) ◽  
pp. 161-170 ◽  
Author(s):  
Bibhuti Mukherjee ◽  
M. G. Rao ◽  
C. Karunakaran

The mineral phases and the distribution of major, minor and trace elements in the clays and bed rocks of two bore-holes at Adda and Chaubatta of the Birbhum area have revealed an intimate relationship of the kaolin-rich clays with the bed-rock of Adda. The possibility of a common origin for the clay deposits at Chaubatta, lying close to the Rajmahal trap formations, and at Adda, lying close to the Archaean boundary, has been inferred from trace element distribution and other factors. A genetic relationship of the clay deposit at Adda with the bed-rock, altered Archaean gneiss, has been established, but there is no significant relationship of the Chaubatta clay deposit with its bed-rock, the weathered basalt.The lateritic cappings above the kaolin-rich clays of Adda and Chaubatta areas are explained as being formed from kaolinite in the weathering sequence as the end-product of intensive desilication under conditions of intensive leaching and increasing acidity near the surface.


2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Pasquale Delogu ◽  
Vittorio Di Trapani ◽  
Luca Brombal ◽  
Giovanni Mettivier ◽  
Angelo Taibi ◽  
...  

Abstract The limits of mammography have led to an increasing interest on possible alternatives such as the breast Computed Tomography (bCT). The common goal of all X-ray imaging techniques is to achieve the optimal contrast resolution, measured through the Contrast to Noise Ratio (CNR), while minimizing the radiological risks, quantified by the dose. Both dose and CNR depend on the energy and the intensity of the X-rays employed for the specific imaging technique. Some attempts to determine an optimal energy for bCT have suggested the range 22 keV–34 keV, some others instead suggested the range 50 keV–60 keV depending on the parameters considered in the study. Recent experimental works, based on the use of monochromatic radiation and breast specimens, show that energies around 32 keV give better image quality respect to setups based on higher energies. In this paper we report a systematic study aiming at defining the range of energies that maximizes the CNR at fixed dose in bCT. The study evaluates several compositions and diameters of the breast and includes various reconstruction algorithms as well as different dose levels. The results show that a good compromise between CNR and dose is obtained using energies around 28 keV.


2020 ◽  
Vol 6 (13) ◽  
pp. eaay3700 ◽  
Author(s):  
Ming Du ◽  
Youssef S. G. Nashed ◽  
Saugat Kandel ◽  
Doğa Gürsoy ◽  
Chris Jacobsen

Conventional tomographic reconstruction algorithms assume that one has obtained pure projection images, involving no within-specimen diffraction effects nor multiple scattering. Advances in x-ray nanotomography are leading toward the violation of these assumptions, by combining the high penetration power of x-rays, which enables thick specimens to be imaged, with improved spatial resolution that decreases the depth of focus of the imaging system. We describe a reconstruction method where multiple scattering and diffraction effects in thick samples are modeled by multislice propagation and the 3D object function is retrieved through iterative optimization. We show that the same proposed method works for both full-field microscopy and for coherent scanning techniques like ptychography. Our implementation uses the optimization toolbox and the automatic differentiation capability of the open-source deep learning package TensorFlow, demonstrating a straightforward way to solve optimization problems in computational imaging with flexibility and portability.


Author(s):  
P. A. Mohr

SummaryAnalytical data on a garnet-chlorite rock and the contained garnet with spectrographic determinations of the trace elements are presented, and the principles determining the distribution of these elements between the garnet and the chlorite are discussed.


Author(s):  
Marco Aurélio Clemente Gonçalves ◽  
Mariele Regina Pinheiro Gonçalves ◽  
Pablo Eduardo Ortiz

The discovery of x-rays, one of the most beautiful experiments ever carried out, generates numerous controversies and these, in turn, can trigger a series of counterproductive information regarding not only the History of Science but also the teaching  activity. The aim of this article is to resolve these controversies concerning what ocurred and highlight the important role of the German physicist Wilhelm Conrad Röntgen, highlighting not only his genius but, especially in this case in particular, his condition of second-order observer. It is not uncommon to find information in various media refering to this discovery under the claim that it was the result of a fortuitous event, and this denotes a profound lack of knowledge about the facts or a disrespect for the renowned discoverer. Such allegations about the event depreciate the extraordinary discovery that impacts humanity, from the deed  to the present. Thus, through a brief historical reconstruction, it was tried to present here what had happened judiciously. With this respect, the brilliant scientist is given the status of a second-rate observer, from the philosophical point of view. This condition resonates with the diachronic aspect of the History of Science, according to the perspective presented here, and it is also supported by the time taken by the discoverer from the beginning of his research until the end of it. Keywords: X-Ray. Second-Order Observer. History of Science. ResumoO descobrimento dos raios-x, um dos mais belos experimentos já realizados, gera inúmeras controvérsias e essas, por sua vez, podem desencadear uma série de informações contraproducentes no tangente não só a História da Ciência como também à atividade de ensino. O presente artigo tem como objetivo dirimir tais polêmicas com respeito ao ocorrido e destacar o importante papel do físico alemão Wilhelm Conrad Röntgen, destacando não só sua genialidade, mas sobretudo, neste caso em particular, a sua condição de observador de segunda ordem. Não é raro encontrar em diversos meios de comunicação informações com respeito a referida descoberta sob a alegação de que a mesma fora fruto de um caso fortuito e isso denota profundo desconhecimento sobre os fatos, ou então, desrespeito com o renomado descobridor. Tais alegações sobre o sucedido depreciam a descoberta extraordinária que impacta a humanidade, desde o feito até a atualidade. Assim, através de breve reconstrução histórica, buscou-se aqui apresentar o ocorrido criteriosamente. Com este respeito passa-se a atribuir ao brilhante cientista a condição de observador de segunda ordem, do ponto de vista filosófico. Tal condição encontra ressonância no aspecto diacrônico da História da Ciência, segundo a perspectiva aqui apresentada e está amparada, também, pelo tempo empreendido pelo descobridor desde o início de sua pesquisa até a finalização da mesma. Palavras-chave: Raios-x. Observador de Segunda Ordem. História da Ciência.


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