scholarly journals A Unifying Model for the Role of Polyamines in Bacterial Cell Growth, the Polyamine Modulon

2004 ◽  
Vol 279 (44) ◽  
pp. 46008-46013 ◽  
Author(s):  
Madoka Yoshida ◽  
Keiko Kashiwagi ◽  
Ai Shigemasa ◽  
Shiho Taniguchi ◽  
Kaneyoshi Yamamoto ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Protein Synthesis ◽  
Cell Growth ◽  
Iron Uptake ◽  
Physiological Role ◽  
Normal Position ◽  
Specific Proteins ◽  
The Common ◽  
Cell Growth And Viability

We reported previously that the synthesis of specific proteins such as OppA, Cya, and RpoS (σ38), which are important for cell growth and viability, is stimulated by polyamines at the level of translation. In this study we found that the synthesis of FecI and Fis was also stimulated by polyamines at the level of translation. The FecI and Fis proteins enhance the expression of mRNAs that are involved in iron uptake and energy metabolism and the expression of rRNA and some tRNAs. The Shine-Dalgarno (SD) sequence of their mRNAs was not obvious or was not located at the usual position. When the SD sequences were created at the normal position on these mRNAs, protein synthesis was no longer influenced by polyamines. Thus, the common characteristic of these mRNAs was to have a weak or ineffective SD sequence. We propose that a group of genes whose expression is enhanced by polyamines at the level of translation be referred to as a “polyamine modulon.” By DNA microarray, we found that 309 of 2,742 mRNA species were upregulated by polyamines. Among the 309 up-regulated genes, transcriptional enhancement of at least 58 genes might be attributable to increased levels of the transcription factors Cya, RpoS, FecI, and Fis, which are all organized in the polyamine modulon. This unifying molecular mechanism is proposed to underlie the physiological role of polyamines in controlling the growth ofEscherichia coli.

scholarly journals Escherichia coli NsrR Regulates a Pathway for the Oxidation of 3-Nitrotyramine to 4-Hydroxy-3-Nitrophenylacetate

2008 ◽  
Vol 190 (18) ◽  
pp. 6170-6177 ◽  
Author(s):  
Linda D. Rankin ◽  
Diane M. Bodenmiller ◽  
Jonathan D. Partridge ◽  
Shirley F. Nishino ◽  
Jim C. Spain ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Physiological Role ◽  
Growth Conditions ◽  
Growth Defect ◽  
E Coli ◽  
Mutant Phenotypes ◽  
Culture Supernatants ◽  
Chip Chip

ABSTRACT Chromatin immunoprecipitation and microarray (ChIP-chip) analysis showed that the nitric oxide (NO)-sensitive repressor NsrR from Escherichia coli binds in vivo to the promoters of the tynA and feaB genes. These genes encode the first two enzymes of a pathway that is required for the catabolism of phenylethylamine (PEA) and its hydroxylated derivatives tyramine and dopamine. Deletion of nsrR caused small increases in the activities of the tynA and feaB promoters in cultures grown on PEA. Overexpression of nsrR severely retarded growth on PEA and caused a marked repression of the tynA and feaB promoters. Both the growth defect and the promoter repression were reversed in the presence of a source of NO. These results are consistent with NsrR mediating repression of the tynA and feaB genes by binding (in an NO-sensitive fashion) to the sites identified by ChIP-chip. E. coli was shown to use 3-nitrotyramine as a nitrogen source for growth, conditions which partially induce the tynA and feaB promoters. Mutation of tynA (but not feaB) prevented growth on 3-nitrotyramine. Growth yields, mutant phenotypes, and analyses of culture supernatants suggested that 3-nitrotyramine is oxidized to 4-hydroxy-3-nitrophenylacetate, with growth occurring at the expense of the amino group of 3-nitrotyramine. Accordingly, enzyme assays showed that 3-nitrotyramine and its oxidation product (4-hydroxy-3-nitrophenylacetaldehyde) could be oxidized by the enzymes encoded by tynA and feaB, respectively. The results suggest that an additional physiological role of the PEA catabolic pathway is to metabolize nitroaromatic compounds that may accumulate in cells exposed to NO.

scholarly journals Key role of l-alanine in the control of hepatic protein synthesis

1987 ◽  
Vol 241 (2) ◽  
pp. 491-498 ◽  
Author(s):  
D Pérez-Sala ◽  
R Parrilla ◽  
M S Ayuso
Keyword(s):  
Amino Acids ◽  
Protein Synthesis ◽  
Physiological Role ◽  
Chain Elongation ◽  
Liver Protein ◽  
Isolated Liver Cells ◽  
Metabolic Transformation ◽  
Hepatic Protein Synthesis

We investigated the effects of administration of single amino acids to starved rats on the regulation of protein synthesis in the liver. Of all the amino acids tested, only alanine, ornithine and proline promoted statistically significant increases in the extent of hepatic polyribosome aggregation. The most effective of these was alanine, whose effect of promoting polyribosomal aggregation was accompanied by a decrease in the polypeptide-chain elongation time. The following observations indicate that alanine plays an important physiological role in the regulation of hepatic protein synthesis. Alanine was the amino acid showing the largest decrease in hepatic content in the transition from high (fed) to low (starved) rates of protein synthesis. The administration of glucose or pyruvate is also effective in increasing liver protein synthesis in starved rats, and their effects were accompanied by an increased hepatic alanine content. An increase in hepatic ornithine content does not lead to an increased protein synthesis, unless it is accompanied by an increase of alanine. The effect of alanine is observed either in vivo, in rats pretreated with cycloserine to prevent its transamination, or in isolated liver cells under conditions in which its metabolic transformation is fully impeded.

Evidence against the physiological role of acetyl phosphate in the phosphorylation of the ArcA response regulator in Escherichia coli

2009 ◽  
Vol 47 (5) ◽  
pp. 657-662 ◽  
Author(s):  
Xueqiao Liu ◽  
Gabriela R. Peña Sandoval ◽  
Barry L. Wanner ◽  
Won Seok Jung ◽  
Dimitris Georgellis ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Response Regulator ◽  
Physiological Role ◽  
Acetyl Phosphate

scholarly journals Physiological Role of the N-terminal Processed P4501A1 Targeted to Mitochondria in Erythromycin Metabolism and Reversal of Erythromycin-mediated Inhibition of Mitochondrial Protein Synthesis

1999 ◽  
Vol 274 (10) ◽  
pp. 6617-6625 ◽  
Author(s):  
Hindupur K. Anandatheerthavarada ◽  
C. Vijayasarathy ◽  
Shripad V. Bhagwat ◽  
Gopa Biswas ◽  
Jayati Mullick ◽  
...  
Keyword(s):  
Protein Synthesis ◽  
Mitochondrial Protein ◽  
Physiological Role ◽  
Mitochondrial Protein Synthesis

Calcium pools, calcium entry, and cell growth

1996 ◽  
Vol 16 (2) ◽  
pp. 139-157 ◽  
Author(s):  
Donald L. Gill ◽  
Richard T. Waldron ◽  
Krystyna E. Rys-Sikora ◽  
Carmen A. Ufret-Vincenty ◽  
Matthew N. Graber ◽  
...  
Keyword(s):  
Cell Cycle ◽  
Cell Growth ◽  
Morphological Analysis ◽  
Essential Fatty Acids ◽  
Physiological Role ◽  
Wide Distribution ◽  
Short Term ◽  
Growth State

The Ca2+ pump and Ca2+ release functions of intracellular Ca2+ pools have been well characterized. However, the nature and identity of Ca2+ pools as well as the physiological implications of Ca2+ levels within them, have remained elusive. Ca2+ pools appear to be contained within the endoplasmic reticulum (ER); however, ER is a heterogeneous and widely distributed organelle, with numerous other functions than Ca2+ regulation. Studies described here center on trying to determine more about subcellular distribution of Ca2+ pools, the levels of Ca2+ within Ca2+ pools, and how these intraluminal Ca2+ levels may be physiologically related to ER function. Experiments utilizing in situ high resolution subcellular morphological analysis of ER loaded with ratiometric fluroescent Ca2+ dyes, indicate a wide distribution of inositol 1,4,5-trisphosphate (InsP3)-sensitive Ca2+ pools within cells, and large changes in the levels of Ca2+ within pools following InsP3-mediated Ca2+ release. Such changes in Ca2+ may be of great significance to the translation, translocation, and folding of proteins in ER, in particular with respect to the function of the now numerously described luminal Ca2+-sensitive chaperonin proteins. Studies have also focussed on the physiological role of pool Ca2+ changes with respect to cell growth. Emptying of pools using Ca2+ pump blockers can result in cells entering a stable quiescent G0-like growth state. After treatment with the irreversible pump blocker, thapsigargin, cells remain in this state until they are stimulated with essential fatty acids whereupon new pump protein is synthesized, functional Ca2+ pools return, and cells reenter the cell cycle. During the Ca2+ pool-depleted growth-arrested state, cells express a Ca2+ influx channel that is distinct from the store-operated Ca2+ influx channels activated after short-term depletion of Ca2+ pools. Overall, these studies indicate that significant changes in intraluminal ER Ca2+ do occur and that such changes appear linked to alteration of essential ER functions as well as to the cell cycle-state and the growth of cells.

scholarly journals Increased Mistranslation ProtectsE. colifrom Protein Misfolding Stress due to Activation of a RpoS-dependent Heat Shock Response

2019 ◽  
Author(s):  
Christopher R. Evans ◽  
Yongqiang Fan ◽  
Jiqiang Ling
Keyword(s):  
Escherichia Coli ◽  
Protein Synthesis ◽  
Heat Shock ◽  
Sigma Factor ◽  
Protein Misfolding ◽  
Protective Function ◽  
General Stress Response ◽  
Shock Response ◽  
Sigma Factor Rpos

AbstractThe misincorporation of an incorrect amino acid into a polypeptide during protein synthesis is considered a detrimental phenomenon. Mistranslated protein is often misfolded and degraded or non-functional and results in an increased cost to quality control machinery. Despite these costs, errors during protein synthesis are common in bacteria. Here we report that increased rates of mistranslation inEscherichia coliprovide protection from protein misfolding stress by increasing the level of the heat shock sigma factor, RpoH. Surprisingly, this increase in RpoH due to mistranslation is dependent on the presence of the general stress response sigma factor, RpoS. This report provides evidence for a protective function of mistranslation and suggests a novel regulatory role of RpoS on the RpoH-activated heat shock.

scholarly journals Alanyl-tRNA Synthetase Quality Control Prevents Global Dysregulation of the Escherichia coli Proteome

mBio ◽  
2019 ◽  
Vol 10 (6) ◽  
Author(s):  
Paul Kelly ◽  
Nicholas Backes ◽  
Kyle Mohler ◽  
Christopher Buser ◽  
Arundhati Kavoor ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Protein Synthesis ◽  
Stress Response ◽  
Genetic Material ◽  
Trna Synthetase ◽  
Content Type ◽  
Beneficial Effects ◽  
Protein Mass ◽  
Protein Mass Spectrometry

ABSTRACT Mechanisms have evolved to prevent errors in replication, transcription, and translation of genetic material, with translational errors occurring most frequently. Errors in protein synthesis can occur at two steps, during tRNA aminoacylation and ribosome decoding. Recent advances in protein mass spectrometry have indicated that previous reports of translational errors have potentially underestimated the frequency of these events, but also that the majority of translational errors occur during ribosomal decoding, suggesting that aminoacylation errors are evolutionarily less tolerated. Despite that interpretation, there is evidence that some aminoacylation errors may be regulated, and thus provide a benefit to the cell, while others are clearly detrimental. Here, we show that while it has been suggested that regulated Thr-to-Ser substitutions may be beneficial, there is a threshold beyond which these errors are detrimental. In contrast, we show that errors mediated by alanyl-tRNA synthetase (AlaRS) are not well tolerated and induce a global stress response that leads to gross perturbation of the Escherichia coli proteome, with potentially catastrophic effects on fitness and viability. Tolerance for Ala mistranslation appears to be much lower than with other translational errors, consistent with previous reports of multiple proofreading mechanisms targeting mischarged tRNAAla. These results demonstrate the essential role of aminoacyl-tRNA proofreading in optimizing cellular fitness and suggest that any potentially beneficial effects of mistranslation may be confined to specific amino acid substitutions. IMPORTANCE Errors in protein synthesis have historically been assumed to be detrimental to the cell. While there are many reports that translational errors are consequential, there is a growing body of evidence that some mistranslation events may be tolerated or even beneficial. Using two models of mistranslation, we compare the direct phenotypic effects of these events in Escherichia coli. This work provides insight into the threshold for tolerance of specific mistranslation events that were previously predicted to be broadly neutral to proteome integrity. Furthermore, these data reveal the effects of mistranslation beyond the general unfolded stress response, leading to global translational reprogramming.

scholarly journals Studies of non-metabolizable polyamines that support growth of SV-3T3 cells depleted of natural polyamines by exposure to α-difluoromethylornithine

1988 ◽  
Vol 254 (2) ◽  
pp. 373-378 ◽  
Author(s):  
S Nagarajan ◽  
B Ganem ◽  
A E Pegg
Keyword(s):  
Cell Growth ◽  
Physiological Role ◽  
3T3 Cells ◽  
Polyamine Synthesis ◽  
Spermine Synthase ◽  
Support Cell ◽  
Polyamine Derivatives ◽  
Metabolic Interconversion

A number of synthetic polyamine derivatives that included five achiral gem-dimethylspermidines and two analogous tetramethylated spermines were tested for their abilities to serve as substrates for enzymes metabolizing polyamines and for their capacities to substitute for the natural polyamines in cell growth. It was found that none of the compounds were effective substrates for spermine synthase, and only one, namely 8,8-dimethylspermidine, was a substrate for spermidine/spermine N1-acetyltransferase. However, all of the spermidine derivatives and 1,1,12,12-tetramethylspermine were able to support the growth of SV-3T3 cells in which endogenous polyamine synthesis was prevented by the addition of alpha-difluoromethylornithine. These results suggest that either spermidine or spermine can support cell growth without the need for metabolic interconversion. In contrast with the result with 1,1,12,12-tetramethylspermine, 3,3,10,10-tetramethylspermine did not restore growth of polyamine-depleted SV-3T3 cells. Comparison of the properties of these derivatives may prove valuable in understanding the physiological role of polyamines.

Sign in / Sign up

Export Citation Format

Share Document