Correlating Sentinel-2 MSI-derived vegetation indices with in-situ reflectance and tissue macronutrients in savannah grass

Due to the challenges brought by field measurements to estimate the aboveground biomass (AGB), such as the remote locations and difficulties in walking in these areas, more accurate and cost-effective methods are required, by the use of remote sensing. In this study, Sentinel-2 data were used for estimating the AGB in pure stands of Carpinus betulus (L., common hornbeam) located in the Hyrcanian forests, northern Iran. For this purpose, the diameter at breast height (DBH) of all trees thicker than 7.5 cm was measured in 55 square plots (45 × 45 m). In situ AGB was estimated using a local volume table and the specific density of wood. To estimate the AGB from remotely sensed data, parametric and nonparametric methods, including Multiple Regression (MR), Artificial Neural Network (ANN), k-Nearest Neighbor (kNN), and Random Forest (RF), were applied to a single image of the Sentinel-2, having as a reference the estimations produced by in situ measurements and their corresponding spectral values of the original spectral (B2, B3, B4, B5, B6, B7, B8, B8a, B11, and B12) and derived synthetic (IPVI, IRECI, GEMI, GNDVI, NDVI, DVI, PSSRA, and RVI) bands. Band 6 located in the red-edge region (0.740 nm) showed the highest correlation with AGB (r = −0.723). A comparison of the machine learning methods indicated that the ANN algorithm returned the best ABG-estimating performance (%RMSE = 19.9). This study demonstrates that simple vegetation indices extracted from Sentinel-2 multispectral imagery can provide good results in the AGB estimation of C. betulus trees of the Hyrcanian forests. The approach used in this study may be extended to similar areas located in temperate forests.

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Retrieval of Evapotranspiration from Sentinel-2: Comparison of Vegetation Indices, Semi-Empirical Models and SNAP Biophysical Processor Approach

Agronomy ◽

10.3390/agronomy9100663 ◽

2019 ◽

Vol 9 (10) ◽

pp. 663 ◽

Cited By ~ 2

Author(s):

Nieves Pasqualotto ◽

Guido D’Urso ◽

Salvatore Falanga Bolognesi ◽

Oscar Rosario Belfiore ◽

Shari Van Wittenberghe ◽

...

Keyword(s):

Remote Sensing ◽

Extinction Coefficient ◽

Vegetation Indices ◽

Area Index ◽

Edge Zone ◽

Red Edge ◽

Agricultural Areas ◽

Semi Empirical ◽

Sentinel 2

Remote sensing evapotranspiration estimation over agricultural areas is increasingly used for irrigation management during the crop growing cycle. Different methodologies based on remote sensing have emerged for the leaf area index (LAI) and the canopy chlorophyll content (CCC) estimation, essential biophysical parameters for crop evapotranspiration monitoring. Using Sentinel-2 (S2) spectral information, this study performed a comparative analysis of empirical (vegetation indices), semi-empirical (CLAIR model with fixed and calibrated extinction coefficient) and artificial neural network S2 products derived from the Sentinel Application Platform Software (SNAP) biophysical processor (ANN S2 products) approaches for the estimation of LAI and CCC. Four independent in situ collected datasets of LAI and CCC, obtained with standard instruments (LAI-2000, SPAD) and a smartphone application (PocketLAI), were used. The ANN S2 products present good statistics for LAI (R2 > 0.70, root mean square error (RMSE) < 0.86) and CCC (R2 > 0.75, RMSE < 0.68 g/m2) retrievals. The normalized Sentinel-2 LAI index (SeLI) is the index that presents good statistics in each dataset (R2 > 0.71, RMSE < 0.78) and for the CCC, the ratio red-edge chlorophyll index (CIred-edge) (R2 > 0.67, RMSE < 0.62 g/m2). Both indices use bands located in the red-edge zone, highlighting the importance of this region. The LAI CLAIR model with a fixed extinction coefficient value produces a R2 > 0.63 and a RMSE < 1.47 and calibrating this coefficient for each study area only improves the statistics in two areas (RMSE ≈ 0.70). Finally, this study analyzed the influence of the LAI parameter estimated with the different methodologies in the calculation of crop potential evapotranspiration (ETc) with the adapted Penman–Monteith (FAO-56 PM), using a multi-temporal dataset. The results were compared with ETc estimated as the product of the reference evapotranspiration (ETo) and on the crop coefficient (Kc) derived from FAO table values. In the absence of independent reference ET data, the estimated ETc with the LAI in situ values were considered as the proxy of the ground-truth. ETc estimated with the ANN S2 LAI product is the closest to the ETc values calculated with the LAI in situ (R2 > 0.90, RMSE < 0.41 mm/d). Our findings indicate the good validation of ANN S2 LAI and CCC products and their further suitability for the implementation in evapotranspiration retrieval of agricultural areas.

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Comparison of Capability of SAR and Optical Data in Mapping Forest above Ground Biomass Based on Machine Learning

Environmental Sciences Proceedings ◽

10.3390/iecg2020-07916 ◽

2020 ◽

Vol 5 (1) ◽

pp. 13

Author(s):

Negar Tavasoli ◽

Hossein Arefi

Keyword(s):

Machine Learning ◽

Carbon Stock ◽

Vegetation Indices ◽

Forest Biomass ◽

Principal Component ◽

Optical Data ◽

Above Ground Biomass ◽

Ground Biomass ◽

Texture Characteristics ◽

Sentinel 2

Assessment of forest above ground biomass (AGB) is critical for managing forest and understanding the role of forest as source of carbon fluxes. Recently, satellite remote sensing products offer the chance to map forest biomass and carbon stock. The present study focuses on comparing the potential use of combination of ALOSPALSAR and Sentinel-1 SAR data, with Sentinel-2 optical data to estimate above ground biomass and carbon stock using Genetic-Random forest machine learning (GA-RF) algorithm. Polarimetric decompositions, texture characteristics and backscatter coefficients of ALOSPALSAR and Sentinel-1, and vegetation indices, tasseled cap, texture parameters and principal component analysis (PCA) of Sentinel-2 based on measured AGB samples were used to estimate biomass. The overall coefficient (R2) of AGB modelling using combination of ALOSPALSAR and Sentinel-1 data, and Sentinel-2 data were respectively 0.70 and 0.62. The result showed that Combining ALOSPALSAR and Sentinel-1 data to predict AGB by using GA-RF model performed better than Sentinel-2 data.

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Modeling of Durum Wheat Yield Based on Sentinel-2 Imagery

Agronomy ◽

10.3390/agronomy11081486 ◽

2021 ◽

Vol 11 (8) ◽

pp. 1486

Author(s):

Chris Cavalaris ◽

Sofia Megoudi ◽

Maria Maxouri ◽

Konstantinos Anatolitis ◽

Marios Sifakis ◽

...

Keyword(s):

Vegetation Index ◽

Normalized Difference Vegetation Index ◽

Vegetation Indices ◽

Model Development ◽

Wheat Yield ◽

Growth Period ◽

Yield Data ◽

Water Index ◽

Normalized Difference Water Index ◽

Sentinel 2

In this study, a modelling approach for the estimation/prediction of wheat yield based on Sentinel-2 data is presented. Model development was accomplished through a two-step process: firstly, the capacity of Sentinel-2 vegetation indices (VIs) to follow plant ecophysiological parameters was established through measurements in a pilot field and secondly, the results of the first step were extended/evaluated in 31 fields, during two growing periods, to increase the applicability range and robustness of the models. Modelling results were examined against yield data collected by a combine harvester equipped with a yield-monitoring system. Normalized Difference Vegetation Index (NDVI) and Enhanced Vegetation Index (EVI) were examined as plant signals and combined with Normalized Difference Water Index (NDWI) and/or Normalized Multiband Drought Index (NMDI) during the growth period or before sowing, as water and soil signals, respectively. The best performing model involved the EVI integral for the 20 April–31 May period as a plant signal and NMDI on 29 April and before sowing as water and soil signals, respectively (R2 = 0.629, RMSE = 538). However, model versions with a single date and maximum seasonal VIs values as a plant signal, performed almost equally well. Since the maximum seasonal VIs values occurred during the last ten days of April, these model versions are suitable for yield prediction.

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Assessing Leaf Biomass of Agave sisalana Using Sentinel-2 Vegetation Indices

Remote Sensing ◽

10.3390/rs13020233 ◽

2021 ◽

Vol 13 (2) ◽

pp. 233

Author(s):

Ilja Vuorinne ◽

Janne Heiskanen ◽

Petri K. E. Pellikka

Keyword(s):

Near Infrared ◽

Vegetation Indices ◽

Fibre Production ◽

Additive Models ◽

Leaf Biomass ◽

Ground Vegetation ◽

Perennial Crop ◽

Red Edge ◽

Agave Sisalana ◽

Sentinel 2

Biomass is a principal variable in crop monitoring and management and in assessing carbon cycling. Remote sensing combined with field measurements can be used to estimate biomass over large areas. This study assessed leaf biomass of Agave sisalana (sisal), a perennial crop whose leaves are grown for fibre production in tropical and subtropical regions. Furthermore, the residue from fibre production can be used to produce bioenergy through anaerobic digestion. First, biomass was estimated for 58 field plots using an allometric approach. Then, Sentinel-2 multispectral satellite imagery was used to model biomass in an 8851-ha plantation in semi-arid south-eastern Kenya. Generalised Additive Models were employed to explore how well biomass was explained by various spectral vegetation indices (VIs). The highest performance (explained deviance = 76%, RMSE = 5.15 Mg ha−1) was achieved with ratio and normalised difference VIs based on the green (R560), red-edge (R740 and R783), and near-infrared (R865) spectral bands. Heterogeneity of ground vegetation and resulting background effects seemed to limit model performance. The best performing VI (R740/R783) was used to predict plantation biomass that ranged from 0 to 46.7 Mg ha−1 (mean biomass 10.6 Mg ha−1). The modelling showed that multispectral data are suitable for assessing sisal leaf biomass at the plantation level and in individual blocks. Although these results demonstrate the value of Sentinel-2 red-edge bands at 20-m resolution, the difference from the best model based on green and near-infrared bands at 10-m resolution was rather small.

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Using Sentinel-2 Images to Estimate Topography, Tidal-Stage Lags and Exposure Periods over Large Intertidal Areas

Remote Sensing ◽

10.3390/rs13020320 ◽

2021 ◽

Vol 13 (2) ◽

pp. 320

Author(s):

José P. Granadeiro ◽

João Belo ◽

Mohamed Henriques ◽

João Catalão ◽

Teresa Catry

Keyword(s):

Large Scale ◽

Exposure Period ◽

Intertidal Area ◽

Digital Elevation ◽

Geographical Bias ◽

Novel Method ◽

Tidal Stage ◽

Sentinel 2

Intertidal areas provide key ecosystem services but are declining worldwide. Digital elevation models (DEMs) are important tools to monitor the evolution of such areas. In this study, we aim at (i) estimating the intertidal topography based on an established pixel-wise algorithm, from Sentinel-2 MultiSpectral Instrument scenes, (ii) implementing a set of procedures to improve the quality of such estimation, and (iii) estimating the exposure period of the intertidal area of the Bijagós Archipelago, Guinea-Bissau. We first propose a four-parameter logistic regression to estimate intertidal topography. Afterwards, we develop a novel method to estimate tide-stage lags in the area covered by a Sentinel-2 scene to correct for geographical bias in topographic estimation resulting from differences in water height within each image. Our method searches for the minimum differences in height estimates obtained from rising and ebbing tides separately, enabling the estimation of cotidal lines. Tidal-stage differences estimated closely matched those published by official authorities. We re-estimated pixel heights from which we produced a model of intertidal exposure period. We obtained a high correlation between predicted and in-situ measurements of exposure period. We highlight the importance of remote sensing to deliver large-scale intertidal DEM and tide-stage data, with relevance for coastal safety, ecology and biodiversity conservation.

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Towards Vine Water Status Monitoring on a Large Scale Using Sentinel-2 Images

Remote Sensing ◽

10.3390/rs13091837 ◽

2021 ◽

Vol 13 (9) ◽

pp. 1837

Author(s):

Eve Laroche-Pinel ◽

Sylvie Duthoit ◽

Mohanad Albughdadi ◽

Anne D. Costard ◽

Jacques Rousseau ◽

...

Keyword(s):

Climate Change ◽

Water Potential ◽

Large Scale ◽

Water Status ◽

Vegetation Indices ◽

Machine Learning Algorithms ◽

Severe Drought ◽

Stem Water Potential ◽

Stem Water ◽

Sentinel 2

Wine growing needs to adapt to confront climate change. In fact, the lack of water becomes more and more important in many regions. Whereas vineyards have been located in dry areas for decades, so they need special resilient varieties and/or a sufficient water supply at key development stages in case of severe drought. With climate change and the decrease of water availability, some vineyard regions face difficulties because of unsuitable variety, wrong vine management or due to the limited water access. Decision support tools are therefore required to optimize water use or to adapt agronomic practices. This study aimed at monitoring vine water status at a large scale with Sentinel-2 images. The goal was to provide a solution that would give spatialized and temporal information throughout the season on the water status of the vines. For this purpose, thirty six plots were monitored in total over three years (2018, 2019 and 2020). Vine water status was measured with stem water potential in field measurements from pea size to ripening stage. Simultaneously Sentinel-2 images were downloaded and processed to extract band reflectance values and compute vegetation indices. In our study, we tested five supervised regression machine learning algorithms to find possible relationships between stem water potential and data acquired from Sentinel-2 images (bands reflectance values and vegetation indices). Regression model using Red, NIR, Red-Edge and SWIR bands gave promising result to predict stem water potential (R2=0.40, RMSE=0.26).

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Industrial Plume Properties Retrieved by Optimal Estimation Using Combined Hyperspectral and Sentinel-2 Data

Remote Sensing ◽

10.3390/rs13101865 ◽

2021 ◽

Vol 13 (10) ◽

pp. 1865

Author(s):

Gabriel Calassou ◽

Pierre-Yves Foucher ◽

Jean-François Léon

Keyword(s):

Matched Filter ◽

Estimation Method ◽

Optimal Estimation ◽

Model Parameters ◽

Surface Reflectance ◽

Sequential Method ◽

Modal Radius ◽

Sentinel 2

Stack emissions from the industrial sector are a subject of concern for air quality. However, the characterization of the stack emission plume properties from in situ observations remains a challenging task. This paper focuses on the characterization of the aerosol properties of a steel plant stack plume through the use of hyperspectral (HS) airborne remote sensing imagery. We propose a new method, based on the combination of HS airborne acquisition and surface reflectance imagery derived from the Sentinel-2 Multi-Spectral Instrument (MSI). The proposed method detects the plume footprint and estimates the surface reflectance under the plume, the aerosol optical thickness (AOT), and the modal radius of the plume. Hyperspectral surface reflectances are estimated using the coupled non-negative matrix factorization (CNMF) method combining HS and MSI data. The CNMF reduces the error associated with estimating the surface reflectance below the plume, particularly for heterogeneous classes. The AOT and modal radius are retrieved using an optimal estimation method (OEM), based on the forward model and allowing for uncertainties in the observations and in the model parameters. The a priori state vector is provided by a sequential method using the root mean square error (RMSE) metric, which outperforms the previously used cluster tuned matched filter (CTMF). The OEM degrees of freedom are then analysed, in order to refine the mask plume and to enhance the quality of the retrieval. The retrieved mean radii of aerosol particles in the plume is 0.125 μμm, with an uncertainty of 0.05 μμm. These results are close to the ultra-fine mode (modal radius around 0.1 μμm) observed from in situ measurements within metallurgical plant plumes from previous studies. The retrieved AOT values vary between 0.07 (near the source point) and 0.01, with uncertainties of 0.005 for the darkest surfaces and above 0.010 for the brightest surfaces.

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Cloud Cover throughout All the Paddy Rice Fields in Guangdong, China: Impacts on Sentinel 2 MSI and Landsat 8 OLI Optical Observations

Remote Sensing ◽

10.3390/rs13152961 ◽

2021 ◽

Vol 13 (15) ◽

pp. 2961

Author(s):

Rui Jiang ◽

Arturo Sanchez-Azofeifa ◽

Kati Laakso ◽

Yan Xu ◽

Zhiyan Zhou ◽

...

Keyword(s):

Cloud Cover ◽

Southern China ◽

Vegetation Indices ◽

Paddy Rice ◽

Rice Fields ◽

Optical Observations ◽

Landsat 8 ◽

Monthly Basis ◽

Satellite Sensors ◽

Sentinel 2

Cloud cover hinders the effective use of vegetation indices from optical satellite-acquired imagery in cloudy agricultural production areas, such as Guangdong, a subtropical province in southern China which supports two-season rice production. The number of cloud-free observations for the earth-orbiting optical satellite sensors must be determined to verify how much their observations are affected by clouds. This study determines the quantified wide-ranging impact of clouds on optical satellite observations by mapping the annual total observations (ATOs), annual cloud-free observations (ACFOs), monthly cloud-free observations (MCFOs) maps, and acquisition probability (AP) of ACFOs for the Sentinel 2 (2017–2019) and Landsat 8 (2014–2019) for all the paddy rice fields in Guangdong province (APRFG), China. The ATOs of Landsat 8 showed relatively stable observations compared to the Sentinel 2, and the per-field ACFOs of Sentinel 2 and Landsat 8 were unevenly distributed. The MCFOs varied on a monthly basis, but in general, the MCFOs were greater between August and December than between January and July. Additionally, the AP of usable ACFOs with 52.1% (Landsat 8) and 47.7% (Sentinel 2) indicated that these two satellite sensors provided markedly restricted observation capability for rice in the study area. Our findings are particularly important and useful in the tropics and subtropics, and the analysis has described cloud cover frequency and pervasiveness throughout different portions of the rice growing season, providing insight into how rice monitoring activities by using Sentinel 2 and Landsat 8 imagery in Guangdong would be impacted by cloud cover.

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A Sentinel-2 Dataset for Uganda

Data ◽

10.3390/data6040035 ◽

2021 ◽

Vol 6 (4) ◽

pp. 35

Author(s):

Jonas Ardö

Keyword(s):

Environmental Monitoring ◽

Input Data ◽

Vegetation Indices ◽

Earth Observation ◽

Observation Data ◽

Output Data ◽

Radiometric Correction ◽

Clear Sky ◽

Earth Observation Data ◽

Sentinel 2

Earth observation data provide useful information for the monitoring and management of vegetation- and land-related resources. The Framework for Operational Radiometric Correction for Environmental monitoring (FORCE) was used to download, process and composite Sentinel-2 data from 2018–2020 for Uganda. Over 16,500 Sentinel-2 data granules were downloaded and processed from top of the atmosphere reflectance to bottom of the atmosphere reflectance and higher-level products, totalling > 9 TB of input data. The output data include the number of clear sky observations per year, the best available pixel composite per year and vegetation indices (mean of EVI and NDVI) per quarter. The study intention was to provide analysis-ready data for all of Uganda from Sentinel-2 at 10 m spatial resolution, allowing users to bypass some basic processing and, hence, facilitate environmental monitoring.

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