scholarly journals Genomic and morphological characteristics of the cold-adapted bacteria Mycetocola saprophilus provide insights into the pathogenesis of soft rot in Flammulina velutipes

2020 ◽  
Vol 34 (1) ◽  
pp. 885-897
Author(s):  
Kun-ang Liu ◽  
Yunpeng Gai ◽  
Amna Fayyaz ◽  
Genwei Zhang ◽  
Meng Liu ◽  
...  
Plant Disease ◽  
2020 ◽  
Author(s):  
Zeng-Liang LIU ◽  
Shuangyun Zhou ◽  
Wenlong Zhang ◽  
Shengjin Wu ◽  
Xuefeng Chen ◽  
...  

Pleurotus pulmonarius is a popular edible fungus and widely cultivated in many areas of China. In June 2018, yellow rot (more than 10% incidence) was found on the first crop of P. pulmonarius fruiting bodies in a mushroom factory in Nanning, Guangxi Province, China. At first, yellow water-soaked lesions appeared in the infected fruiting bodies. Lesions then spread and purulent tissues were formed. Severe rot induced production of deformed fruiting bodies and offensive odor. Internal sections of the diseased tissue (approximately 0.5 × 0.5 cm) were sterilized in 75% alcohol for 30 s, rinsed three times with sterilized and deionized water, crushed and suspended in sterilized and deionized water. The suspension was spread on the Luria-Bertani (LB) medium. After incubation at 30°C for 2 days, dominant bacterial colonies were oyster white, smooth, convex, and circular. Individual colonies were transferred two times to LB medium using the conventional streak plate techniques to obtain the pure cultures. The cells were gram-negative, short rods, motile, and no capsules or endospores were observed. Using a BoJian Gram-negative bacteria biochemical analysis kit (5 CARDS, Hopebio, Qingdao, China), data were obtained and analyzed, showing that the isolated strain belongs to the Cedecea genus (positive for β-galactosidase, citric acid, arginine, sucrose, mannitol, sorbitol, D-glucose, gelatin hydrolysis and VP test but negative for H2S, urease, oxidase, indole, rhamnose, melibiose, amygdalin, lysine, ornithine, lactose, inositol and arabinose). Amplified 16S rDNA gene sequences (1,424 bp, GenBank accession No. MT925570) of the isolate using the universal primers 27f and 1492r (Lane 1991) exhibited 99.86% identity with Cedecea neteri M006 (CP009458.1). Based on its morphological characteristics, 16S rDNA sequences, and biochemical test results, the strain was identified as C. neteri. Pathogenicity tests for this strain were performed with bacterial suspensions (approximately 1 × 108 CFU/ml) after growing for 24 h in LB medium at 30°C. Mycelia of P. pulmonarius were cultivated for 60 days in plastic bags. Then young fruiting bodies were formed after induced with low temperature stimulation to serve as a host source. The prepared bacterial suspensions were directly sprayed onto the surface of three bags of fruiting bodies; another three bags were sprayed with sterilized and deionized water as negative control. All inoculated fruiting bodies were then incubated at 20°C with 90 to 95% relative humidity. All experiments were repeated three times. After 2 days, all the fruiting bodies inoculated with the bacterial suspensions showed yellow water-soaked lesions, and the normal growth of the fruiting bodies was inhibited. An offensive odor then developed along with a severe soft rot that was similar to the disease symptoms observed under natural conditions. The fruiting bodies of negative control were growing healthily with no symptoms. Koch's postulates were fulfilled by isolating bacteria from lesions on artificially inoculated fruiting bodies that were identical to the original isolates based on morphological characteristics, 16S rDNA sequences and biochemical test results. C. neteri was formally reported as a pathogen to humans that could cause bacteremia (Farmer et al. 1982). Recently, it has also been reported causing soft rot disease on mushrooms of Pholiota nameko (Yan et al. 2018) and yellow sticky disease on mushrooms of Flammulina velutipes (Yan et al. 2019). However, to the best of our knowledge, this is the first report of C. neteri-induced yellow rot disease of P. pulmonarius in China.


Plant Disease ◽  
2021 ◽  
Author(s):  
Caiyun Xiao ◽  
Rongyu Li ◽  
Xingchen Song ◽  
Xujun Tian ◽  
Qijun Zhao

In recent years, soft rot is one of the most serious diseases in the production of Dendrobium officinale. In this study, we took the diseased plants of Dendrobium officinale in Guizhou as samples, through Koch's rule and sequence analysis of rDNA internal transcribed spacer (rDNA-ITS), calmodulin (cmdA), the second largest subunit of RNA polymerase Ⅱ (RPB2), elongation factor EF-1 α and β-tubulin (β-Tub), it was determined that the pathogen of Dendrobium officinale soft rot was sorghum accessory cocci. This is our first report on the soft rot of Dendrobium officinale caused by Epicoccum sorghinum in China. The morphological characteristics of the pathogen shown in the study will have a certain reference value for the prevention and control of the soft rot of Dendrobium officinale in the future.


2021 ◽  
Vol 9 (2) ◽  
pp. 46-53
Author(s):  
Albana L. Chawngthu ◽  
◽  
G. Rosangkima ◽  
Vanram liana ◽  
Chhungpuii Khawlhring ◽  
...  

Ginger (Zingiber officinale Rosc.,Zingiberaceae) is an important crop grown in India known for its therapeutic uses. Wilting caused by bacteria, soft rot and yellow disease caused by fungi are the major diseases affecting Ginger production and its cultivation hampering its growth and development. The current study emphasize on the morphological and molecular identification of fungal pathogens causing soft rot disease in ginger that have become one of the major problem among farmers of Mizoram, India as a result of which resulted in a huge decline in rhizome yield and its production. Nevertheless, due to limited studies of the medicinal plants the causative agents associated with these plants are not available. The objective of this study is to investigate the diversity of fungi that cause soft rot in ginger. Twenty fungi were successfully isolated from four villages of Champha iDistrict, Mizoram. The fungi isolated from the infected rhizome were cultured and identification was carried out using morphological characteristics and molecular analysis of DNA sequence generated from Internal Transcribed Spacer rDNA region. Of the samples collected, F. solani,F. oxysporum, P. myriotylum were the most common causative agents. Much research work has yet to be undertaken explore the diversity of pathogrnic fungi causing soft rot in Mizoram which could be very significant in introducing competent and eco-friendly disease management programme.


2004 ◽  
Vol 70 (3) ◽  
pp. 1328-1335 ◽  
Author(s):  
Robert A. Blanchette ◽  
Benjamin W. Held ◽  
Joel A. Jurgens ◽  
Douglas L. McNew ◽  
Thomas C. Harrington ◽  
...  

ABSTRACT Three expedition huts in the Ross Sea region of Antarctica, built between 1901 and 1911 by Robert F. Scott and Ernest Shackleton, sheltered and stored the supplies for up to 48 men for 3 years during their explorations and scientific investigation in the South Pole region. The huts, built with wood taken to Antarctica by the early explorers, have deteriorated over the past decades. Although Antarctica has one of the coldest and driest environments on earth, microbes have colonized the wood and limited decay has occurred. Some wood in contact with the ground contained distinct microscopic cavities within secondary cell walls caused by soft rot fungi. Cadophora spp. could be cultured from decayed wood and other woods sampled from the huts and artifacts and were commonly associated with the soft rot attack. By using internal transcribed spacer sequences of ribosomal DNA and morphological characteristics, several species of Cadophora were identified, including C. malorum, C. luteo-olivacea, and C. fastigiata. Several previously undescribed Cadophora spp. also were found. At the Cape Evans and Cape Royds huts, Cadophora spp. commonly were isolated from wood in contact with the ground but were not always associated with soft rot decay. Pure cultures of Cadophora used in laboratory decay studies caused dark staining of all woods tested and extensive soft rot in Betula and Populus wood. The presence of Cadophora species, but only limited decay, suggests there is no immediate threat to the structural integrity of the huts. These fungi, however, are widely found in wood from the historic huts and have the capacity to cause extensive soft rot if conditions that are more conducive to decay become common.


2014 ◽  
Vol 2014 ◽  
pp. 1-8 ◽  
Author(s):  
Tamilarasan Thangavel ◽  
Robert Steven Tegg ◽  
Calum Rae Wilson

Multiple disease resistance is an aim of many plant breeding programs. Previously, novel somatic cell selection was used to generate potato variants of “Russet Burbank” with resistance to common scab caused by infection with an actinomycete pathogen. Coexpression of resistance to powdery scab caused by a protozoan pathogen was subsequently shown. This study sought to define whether this resistance was effective against additional potato tuber diseases, black scurf, and tuber soft rot induced by fungal and bacterial pathogens. Pot trials andin vitroassays with multiple pathogenic strains identified significant resistance to both tuber diseases across the potato variants examined; the best clone A380 showed 51% and 65% reductions in disease severity to tuber soft rot and black scurf, respectively, when compared with the parent line. The resistance appeared to be tuber specific as no enhanced resistance was recorded in stolons or stem material when challengedRhizoctonia solanithat induces stolon pruning and stem canker. The work presented here suggests that morphological characteristics associated with tuber resistance may be the predominant change that has resulted from the somaclonal cell selection process, potentially underpinning the demonstrated broad spectrum of resistance to tuber invading pathogens.


Biomolecules ◽  
2021 ◽  
Vol 11 (6) ◽  
pp. 828
Author(s):  
Katarzyna M. Wiśniewska ◽  
Aleksandra Twarda-Clapa ◽  
Aneta M. Białkowska

Psychrophilic laccases catalyzing the bond formation in mild, environmentally friendly conditions are one of the biocatalysts at the focus of green chemistry. Screening of 41 cold-adapted strains of yeast and yeast-like fungi revealed a new laccase-producing strain, which was identified as Kabatiella bupleuri G3 IBMiP according to the morphological characteristics and analysis of sequences of the D1/D2 regions of 26S rDNA domain and the ITS1–5,8S–ITS2 region. The extracellular activity of laccase in reaction with 2,2’-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS) at the optimal pH 3.5 was 215 U/L after 15 days of growth in a medium with waste material and 126 U/L after 25 days of cultivation in a defined medium. Copper (II) ions (0.4 mM), Tween 80 (1.0 mM) and ascorbic acid (5.0 mM) increased the production of laccase. The optimum temperature for enzyme operation is in the range of 30–40 °C and retains over 60% of the maximum activity at 10 °C. New laccase shows high thermolability—half-life at 40 °C was only 60 min. Enzyme degradation of synthetic dyes was the highest for crystal violet, i.e., 48.6% after 1-h reaction with ABTS as a mediator. Outcomes of this study present the K. bupleuri laccase as a potential psychrozyme for environmental and industrial applications.


Plant Disease ◽  
2007 ◽  
Vol 91 (4) ◽  
pp. 459-459 ◽  
Author(s):  
C. Saude ◽  
M. K. Hausbeck ◽  
O. Hurtado-Gonzales ◽  
C. Rippetoe ◽  
K. H. Lamour

In the fall of 2005, processing carrot fields in Mason, Newaygo, and Oceana counties, Michigan, were surveyed for Phytophthora spp. Carrot roots were sampled from areas of fields that exhibited patches of chlorotic, blighted, or wilted foliage. Dark brown, firm, water-soaked lesions occurred near the middle and crown areas of diseased carrot roots. In the advanced stages of disease, carrot root tissue readily collapsed and a soft rot developed while petioles turned black. The internal portions of the diseased carrot roots were brown and rubbery. Roots with these symptoms are not suitable for processing. Carrot roots were washed with tap water and the tissue excised from the edge of developing lesions and plated aseptically onto BARP-amended (25 ppm of benomyl, 100 ppm of ampicillin, 30 ppm of rifampicin, and 100 ppm of pentachloronitrobenzene) regular V8 juice agar. Plates were incubated at 23 to 25°C for 7 days. Phytophthora sp. was isolated from carrot root samples from all surveyed areas. Ten representative single-sporangium isolates cultured on dilute V8 juice agar were examined for morphological characteristics. The homothallic Phytophthora sp. isolates produced papillate, obpyriform, caducous sporangia (35.0 to 45.2 × 26.2 to 33.2 μm) with 1 to 3 μm long pedicels, plerotic oospores (27.0 to 32.0 μm in diameter) with paragynous antheridia, and primarily terminally produced chlamydospores that were 30.0 to 40.0 μm in diameter. Radial growth on V8 juice agar was observed at temperatures between 10 and 30°C with optimum growth at 25°C and no growth at 5 and 35°C. Pathogenicity of the 10 isolates was tested by inoculating three of each wounded and nonwounded carrot roots with a 7-mm mycelial plug from the edge of actively growing 5-day-old cultures. Inoculated carrot roots were incubated for 7 days in a moist chamber at 23 to 25°C. Symptoms developed 3 to 7 days after inoculation, with non-wounded roots exhibiting firm, dark brown, water-soaked lesions and wounded roots exhibiting soft rot with dark brown margins. The Phytophthora sp. was always isolated from the inoculated roots. Controls remained healthy and no pathogen was isolated from these roots. On the basis of the morphological and physiological characteristics, the Phytophthora sp. isolated was identified as Phytophthora cactorum ((Lebert & Cohn) J. Schrot.) (2). Identity of these isolates was confirmed by sequencing of the internal transcriber spacers (ITS). Amplified fragment length polymorphism (AFLP) profiles for 37 isolates were >83% similar, which is expected for conspecific isolates. The ITS sequences from six representative isolates were identical and shared 100% homology to P. cactorum (GenBank Accession No. AF266772) isolated from Rubus idaeus (1). The consensus ITS sequence was deposited in NCBI (Accession No. EF052680). P. cactorum was reported in New York on field and stored carrot roots in 1952 (3), but to our knowledge, this is the first report in Michigan. Finding of P. cactorum on carrot roots represents a new and significant threat to the Michigan processing carrot industry, which ranks fourth in the United States. References: (1) D. E. L. Cooke et al. Fungal Gen. Biol. 30:17, 2000. (2) D. C. Erwin and O. K. Ribeiro. Phytophthora Disease Worldwide. The American Phytopathological Society. St. Paul, MN, 1996. (3) W. E. Rader. N Y State (Cornell) Agr. Exp. Stn. Bull. 889:5, 1952.


2017 ◽  
Vol 3 (2) ◽  
pp. 218-223
Author(s):  
Achbani E. H. ◽  
S. Sadik ◽  
R. El Kahkahi ◽  
A. Benbouazza ◽  
H. Mazouz

Pseudomonas marginalis is an important postharvest pathogen causing soft rot in a wide variety of harvested fruits and vegetables. Isolated strains from rotten onion bulbs based on morphological characteristics, were tested for pathogenecity on tobacco. Pathogenic strains underwent a biochemical test which detected the presence of P. marginalis. Symptoms were reproduced by inoculating this species to onion leaves and bulbs. Based on ARN16S sequencing, reported associated species (Pantoea agglomerans, Pseudomonas fluorescens, Klebsiella oxytoca) were also confirmed. This study reports for the first time the presence of P. marginalis bacterium in Morocco causing the soft rot of onion bulb, in association with Pantoea agglomerans, Pseudomonas fluorescens, and Klebsiella oxytoca.


Plant Disease ◽  
2009 ◽  
Vol 93 (5) ◽  
pp. 547-547
Author(s):  
S. N. Rampersad

Trinidad is a major exporter of pumpkins (Cucurbita pepo L.) to other Caribbean countries, Canada, and the United States. Producers and exporters have reported 50 to 80% yield losses because of soft rot and overnight collapse of fruit at the pre- and postharvest stages. Severe fruit rot occurred in fields in Victoria County in South Trinidad between April and May 2006 (mid-to-late dry season) with an increase in the severity and number of affected fruit in the rainy season (July to December). Symptoms began as water-soaked lesions on the fruit of any age at the point of contact with the soil. The disease progressed to a soft rot with leakage and whole fruit collapse. A dark brown, soft decay also developed at the base of the main vines. Fusarium solani was isolated on selective fusarium agar and potato dextrose agar (PDA) (1) after 7 to 10 days of incubation at 25°C. The pathogen was identified by morphological characteristics and pathogenicity tests. Colonies were fast growing with white aerial mycelia and a cream color on the reverse side; hyphae were septate and hyaline, conidiophores were unbranched, and microconidia were abundant, thin walled, hyaline, fusiform to ovoid, generally one to two celled, and 8 to 10 × 2 to 4 μm. Macroconidia were hyaline, two to three celled, moderately curved, thick walled, and 25 to 30 × 4 to 6 μm. Pathogenicity tests for 10 isolates were conducted on 2-week-old pumpkin seedlings (cv. Jamaican squash; seven plants per isolate) and mature pumpkin fruit (2). Briefly, seedlings were inoculated by dipping their roots in a spore suspension (1 × 104 spores per ml) for 20 min. The plants were repotted in sterile potting soil. For negative controls, plant roots were dipped in sterile water. After the rind of fruit was swabbed with 70% ethanol followed by three rinses with sterile distilled water, 0.4-cm-diameter agar plugs of the isolates were inserted into wounds made with a sterile 1-cm-diameter borer. Sterile PDA plugs served as negative controls. Fruit were placed in sealed, clear, plastic bags. Inoculated plants and fruit were placed on greenhouse benches (30 to 32°C day and 25 to 27°C night temperatures) and monitored over a 30-day period. Tests were repeated once. Inoculated fruit developed a brown, spongy lesion that expanded from the initial wound site over a period of approximately 17 days after inoculation. White mycelia grew diffusely over the lesion. Inoculated plants developed yellow and finally necrotic leaves and lesions developed on stems at the soil line approximately 21 days after inoculation. No symptoms developed on the control plants. The fungus was reisolated from symptomatic tissue, fulfilling Koch's postulates. To my knowledge, this is the first report of Fusarium fruit rot of pumpkin in Trinidad. References: (1) J. Leslie and B. Summerell. Page 1 in: The Fusarium Laboratory Manual. Blackwell Publishing, Oxford, 2006. (2) W. H. Elmer. Plant Dis. 80:131, 1996.


2004 ◽  
Vol 50 (11) ◽  
pp. 935-941 ◽  
Author(s):  
Beom Ryong Kang ◽  
Jung Hoon Lee ◽  
Sug Ju Ko ◽  
Yong Hwan Lee ◽  
Jae Soon Cha ◽  
...  

A bacterium C1010, isolated from the rhizospheres of cucumbers in fields in Korea, degraded the microbial quorum-sensing molecules, hexanoyl homoserine lactone (HHSL), and octadecanoyl homoserine lactone (OHSL). Morphological characteristics and 16S rRNA sequence analysis identified C1010 as Acinetobacter sp. strain C1010. This strain was able to degrade the acyl-homoserine lactones (AHLs) produced by the biocontrol bacterium, Pseudomonas chlororaphis O6, and a phytopathogenic bacterium, Burkholderia glumae. Co-cultivation studies showed that the inactivation of AHLs by C1010 inhibited production of phenazines by P. chlororaphis O6. In virulence tests, the C1010 strain attenuated soft rot symptom caused by Erwinia carotovora ssp. carotovora. We suggest Acinetobacter sp. strain C1010 could be a useful bacterium to manipulate biological functions that are regulated by AHLs in various Gram-negative bacteria.Key words: quorum sensing, biological control, attenuation of bacterial diseases.


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