scholarly journals Identification of the transgene insertion site for an adipocyte-specific adiponectin-cre model and characterization of the functional consequences

Adipocyte ◽  
2021 ◽  
Vol 10 (1) ◽  
pp. 91-100
Author(s):  
Jared S. Farrar ◽  
Joseph C. Lownik ◽  
Grayson W. Way ◽  
Matthew C. Rodriguez ◽  
Francesco S. Celi ◽  
...  
Genetics ◽  
2001 ◽  
Vol 157 (4) ◽  
pp. 1665-1672 ◽  
Author(s):  
Ross B Hodgetts ◽  
Sandra L O'Keefe

Abstract We report here the isolation of a new P-element-induced allele of the vestigial locus vg2a33, the molecular characterization of which allows us to propose a unifying explanation of the phenotypes of the large number of vestigial P-element alleles that now exists. The first P-element allele of vestigial to be isolated was vg21, which results in a very weak mutant wing phenotype that is suppressed in the P cytotype. By destabilizing vg2a33 in a dysgenic cross, we isolated the vg2a33 allele, which exhibits a moderate mutant wing phenotype and is not suppressed by the P cytotype. The new allele is characterized by a 46-bp deletion that removes the 3′-proximal copy of the 11-bp internal repeat from the P element of vg21. To understand how this subtle difference between the two alleles leads to a rather pronounced difference in their phenotypes, we mapped both the vg and P-element transcription units present in wild type and mutants. Using both 5′-RACE and S1 protection, we found that P-element transcription is initiated 19 bp farther upstream than previously thought. Using primer extension, the start of vg transcription was determined to lie 435 bp upstream of the longest cDNA recovered to date and upstream of the P-element insertion site. Our discovery that the P element is situated within the first vg exon has prompted a reassessment of the large body of genetic data on a series of alleles derived from vg21. Our current hypothesis to explain the degree of variation in the mutant phenotypes and their response to the P repressor invokes a critical RNA secondary structure in the vg transcript, the formation of which is hindered by a readthrough transcript initiated at the P-element promoter.


iScience ◽  
2021 ◽  
pp. 102681
Author(s):  
Chao Wu ◽  
Abraham J. Qavi ◽  
Asmaa Hachim ◽  
Niloufar Kavian ◽  
Aidan R. Cole ◽  
...  

2021 ◽  
Vol 9 (4) ◽  
pp. 55
Author(s):  
Joshua Mallen ◽  
Manisha Kalsan ◽  
Peyman Zarrineh ◽  
Laure Bridoux ◽  
Shandar Ahmad ◽  
...  

The highly conserved HOX homeodomain (HD) transcription factors (TFs) establish the identity of different body parts along the antero–posterior axis of bilaterian animals. Segment diversification and the morphogenesis of different structures is achieved by generating precise patterns of HOX expression along the antero–posterior axis and by the ability of different HOX TFs to instruct unique and specific transcriptional programs. However, HOX binding properties in vitro, characterised by the recognition of similar AT-rich binding sequences, do not account for the ability of different HOX to instruct segment-specific transcriptional programs. To address this problem, we previously compared HOXA2 and HOXA3 binding in vivo. Here, we explore if sequence motif enrichments observed in vivo are explained by binding affinities in vitro. Unexpectedly, we found that the highest enriched motif in HOXA2 peaks was not recognised by HOXA2 in vitro, highlighting the importance of investigating HOX binding in its physiological context. We also report the ability of HOXA2 and HOXA3 to heterodimerise, which may have functional consequences for the HOX patterning function in vivo.


Genetics ◽  
1992 ◽  
Vol 130 (2) ◽  
pp. 377-384 ◽  
Author(s):  
G Baran ◽  
C Echt ◽  
T Bureau ◽  
S Wessler

Abstract The somatic and germinal behavior of the maize wx-B3 mutation indicates that this Ac allele rarely reverts. Endosperms containing wx-B3 display tiny and infrequent Wx revertant sectors while no significant reversion is detected when wx-B3 pollen is stained with I/KI. Previous studies of other transposable element alleles that revert infrequently have implicated low levels of element excision. Unlike these other alleles, the wx-B3 Ac element is indistinguishable from fully active Ac elements with respect to its structure, and its ability to transpose from the Wx gene or to trans-activate a Ds element. Characterization of somatic and germinal excision events lead us to conclude that excision of the wx-B3 Ac element almost always produces null alleles. Furthermore, the excellent correlation between the position of the wx-B3 mutation on the physical and genetic maps indicates that the Ac insertion is the only lesion of wx-B3. As a result, precise excision of this Ac should restore Wx function. The fact that revertant sectors and pollen grains are rare indicates that precise excision of Ac is also rare. The finding that the wx-B3 reversion frequency is comparable whether wx-B3 is hemizygous or over a wx allele with a wild-type insertion site illustrates a fundamental difference between the excision mechanisms of Ac and Drosophila P elements.


2015 ◽  
Vol 84 (3) ◽  
pp. 701-710 ◽  
Author(s):  
Madeleine G. Moule ◽  
Natasha Spink ◽  
Sam Willcocks ◽  
Jiali Lim ◽  
José Afonso Guerra-Assunção ◽  
...  

Burkholderia pseudomallei, the causative agent of melioidosis, has complex and poorly understood extracellular and intracellular lifestyles. We used transposon-directed insertion site sequencing (TraDIS) to retrospectively analyze a transposon library that had previously been screened through a BALB/c mouse model to identify genes important for growth and survivalin vivo. This allowed us to identify the insertion sites and phenotypes of negatively selected mutants that were previously overlooked due to technical constraints. All 23 unique genes identified in the original screen were confirmed by TraDIS, and an additional 105 mutants with various degrees of attenuationin vivowere identified. Five of the newly identified genes were chosen for further characterization, and clean, unmarkedbpsl2248,tex,rpiR,bpsl1728, andbpss1528deletion mutants were constructed from the wild-type strain K96243. Each of these mutants was testedin vitroandin vivoto confirm their attenuated phenotypes and investigate the nature of the attenuation. Our results confirm that we have identified new genes important toin vivovirulence with roles in different stages ofB. pseudomalleipathogenesis, including extracellular and intracellular survival. Of particular interest, deletion of the transcription accessory protein Tex was shown to be highly attenuating, and thetexmutant was capable of providing protective immunity against challenge with wild-typeB. pseudomallei, suggesting that the genes identified in our TraDIS screen have the potential to be investigated as live vaccine candidates.


Blood ◽  
2004 ◽  
Vol 104 (11) ◽  
pp. 2672-2672
Author(s):  
Rima L. Adler ◽  
Peiman Hematti ◽  
Boris Calmels ◽  
Cole J. Ferguson ◽  
Keyvan Keyvanfar ◽  
...  

Abstract Hematopoietic stem cells are defined by their ability both to self-renew and to differentiate into cells that repopulate all hematopoietic lineages. A common lymphoid progenitor (CLP) from mouse marrow has been phenotypically purified and shown to only transiently repopulate all lymphoid lineages (T, B, and NK) but not myeloid lineages when transplanted into lethally irradiated recipients (Kondo et al, 1997). Using the rhesus macaque as a model for human hematopoiesis, we asked whether lineage-restricted repopulating cells contribute to hematopoietic output and for how long following engraftment. In order to follow the progeny of progenitor or stem cell clones in vivo, retroviral vectors were used to mark primitive hematopoietic cells before reinfusion into lethally irradiated autologous recipients. The conditions utilized result in high level of stable retroviral marking in all lineages. We have previously reported use of the sensitive Linear Amplification Mediated - Polymerase Chain Reaction (LAM-PCR) showing that a highly polyclonal set of stable clones accounts for myelopoiesis (Schmidt et al, 2002). In the current study, detailed characterization of the full array of clones contributing to granulocytes, T-lymphocytes, and B-lymphocytes post-engraftment was performed, via sequence analysis of individual clones delineated by individual insertion site sequences at various time points following transplantation of CD34+ cells. Thus far, we have identified 59 granulocyte and 148 T-lymphocyte clones at 1 month following transplantation. Most clones detected at this time point uniquely contribute to only the lineage from which they were identified, only three clones were common to both lineages (1.5% overlap, 95%CI=(0–3.1%)), suggesting independent cells are responsible for hematopoietic reconstitution at this early time point. Six-months following transplantation fewer clones were detected to contribute to hematopoiesis. Interestingly, of the 22 granulocyte and 46 T-lymphocyte clones identified, only two were shared between both lineages (3.0% overlap, 95%CI= (0–7.2%)), further supporting the hypothesis that lineage committed progenitors are responsible for both early and potentially more stable hematopoiesis in this model. To our knowledge, no other study has provided such an extensive characterization of clones contributing to early or more stable in vivo hematopoiesis in the primate model. Preliminary sequence specific tracking experiments reveal that the clones contributing at six-months remain lineage specific over time. Further tracking of clones is being conducted to fully assess the role of such lineage specific progenitor cells in B-lymphopoiesis and long-term hematopoiesis.


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