5. Microbial engines of the coral reef

Author(s):  
Charles Sheppard

The symbiosis between corals and the dinoflagellates—zooxanthellae—is the key to a tight recycling of nutrients on reefs that generally thrive best in nutrient poor parts of the oceans. But several other mechanisms and species groups aid transmission of organic matter and energy along the numerous food chains of a reef. Viruses, bacteria, and archaea are key to the recycling of carbon and organic compounds, making the ‘microbial loop’, one key but invisible aspect to how the reef functions. Cyanobacteria, formerly blue-green algae, are a major part of the micro-benthos too, and are important primary producers. Protists are also hugely abundant—larger, single-celled organisms which are eukaryotes with cells with nuclei, and this group has species that exist in planktonic and benthic forms. Foraminifera are important protists, being abundant and having calcareous tests, so that they are significant sand producers in some areas. Finally, zooplankton provide food for numerous reef species, and indeed larvae from all species form part of the plankton temporarily too.

1983 ◽  
Vol 15 (6-7) ◽  
pp. 181-190 ◽  
Author(s):  
George P Slater ◽  
Vivian C Blok

A relationship between blue-green algae and off-flavours in water was reported as early as 1883. Continuing research has shown that two metabolites, geosmin and methylisoborneol are major contributors to unpalatable flavours in water and aquatic organisms. Many instances of the co-occurrence of these two compounds and dense blooms of blue-green algae have been recorded. Cultures of Anabaena, Lyngbya, Osciiiatoria, and Sympioca species have been shown to produce geosmin or methylisoborneol while blooms of Aphanizomenon, Anabaena, Microcystis, Oscillatoria, and Gomphosphaeria have been found in water containing geosmin or the odour of this compound. Actinomycetes have also been shown to produce these two compounds. In addition to geosmin and methylisoborneol, there is evidence that several other blue-green algal metabolites contribute to aquatic taste and odour problems. Among them is β-cyclocitral which has a distinctive tobacco flavour. Blue-green algae produce a variety of organic compounds including hydrocarbons, fatty acids, aromatics, ketones, terpenoids, amines and Sulfides which could contribute to the over-all flavour of water and aquatic organisms.


1942 ◽  
Vol 32 (4) ◽  
pp. 341-361 ◽  
Author(s):  
Paul F. Russell ◽  
T. Ramachandra Rao

(1) In seepage-filled borrow-pits in South India it was observed that there was a progressive decline in the density of larvae of Anopheles culicifacies, Giles, as the pits became older. The largest numbers of larvae were tound soon after water entered the newly-dug pits.(2) There was less ovipositing by culicifacies in older pits than in new ones dug late in the irrigation season. Newer pits seemed definitely more attractive in this species than older ones. These newer pits sheltered more culicifacies larvae late in the season than the older pits.(3) The decline of culicifacies larva density in a borrow-pit seemed to be due mainly to factors internal to the pits. There was no evidence of the influence of external factors, except from October to January, when perhaps meteorological influences supplemented the internal factors. The attractiveness of new borrow-pits to culicifacies appeared to be due mainly to internal factors.(4) Certain simple factors studied did not seem to have any significance in relation to culicifacies density in the pits. Rainfall, predators, macroscopic vegetation, pH, CO2, dissolved oxygen, bicarbonate alkalinity, ratio of free to bound and half bound CO2, hardness, chlorine, ammoniacal nitrogen, nitrates, nitrites, sulfates and iron, appeared to have no significance in this regard. Albuminoid nitrogen and oxygen absorbed perhaps had some significance, which was not clear.(5) Among planktonic organisms, the individual groups of organisms, such as green algae, diatoms, rotifers, and copepods, definitely showed no relation to culicifacies breeding. Protozoa as a group appeared to be negatively associated to a slight degree. Blue-green algae also seemed to have a negative association.(6) Amorphous organic matter and total plankton, however, showed statistically significant negative association with larval density of culicifacies The decline in culicifacies larvae was clearly associated with increase in total plankton and amorphous matter. The attractiveness of new borrow-pits also seemed to be related to their low total plankton content.(7) The exact manner in which the total organic matter acted as an inhibitory factor against culicifacies breeding was not determined.


1974 ◽  
Vol 52 (11) ◽  
pp. 2369-2374 ◽  
Author(s):  
Daniel H. Pope

Several algal types were tested for the ability to assimilate a variety of organic compounds including glucose, sucrose, glycerol, acetate, and a variety of amino acids. Axenic cultures of Phaeodactylum tricornutum, Cricosphaera sp., and Dunaliella tertiolecta failed to take up any of the compounds tested. Axenic cultures of the filamentous blue-green algae Phormidium sp. and Lyngbya sp. took up all of the test substrates, as did the "olive-green cells" (a non-bacteria-free sample of marine algal cells described as olive-green cells by other workers). The results of experiments to determine uptake rates over the range 10−7 to 10−3 molar substrate, rates of uptake at 18, 24, and 32C, and rates of uptake in the presence of the metabolic inhibitors dinitrophenol (DNP) and carbanyl cyanide m-chlorophenylhydrazone (CCCP) indicated that uptake of the organic compounds tested by the filamentous blue-green algae tested is not by an active transport mechanism.


2021 ◽  
Author(s):  
Ayesha Algade Amadu ◽  
Kweku Amoako Atta deGraft-Johnson ◽  
Gabriel Komla Ameka

Cyanobacteria also known as blue-green algae are oxygenic photoautotrophs, which evolved ca. 3.5 billion years ago. Because cyanobacteria are rich sources of bioactive compounds, they have diverse industrial applications such as algaecides, antibacterial, antiviral and antifungal agents, hence, their wide use in the agricultural and health sectors. Cyanobacterial secondary metabolites are also important sources of enzymes, toxins, vitamins, and other pharmaceuticals. Polyhydroxy- alkanoates (PHA) which accumulate intracellularly in some cyanobacteria species can be used in the production of bioplastics that have properties comparable to polypropylene and polyethylene. Some cyanobacteria are also employed in bioremediation as they are capable of oxidizing oil components and other complex organic compounds. There are many more possible industrial applications of cyanobacteria such as biofuel, biofertilizer, food, nutraceuticals, and pharmaceuticals. Additionally, the metabolic pathways that lead to the production of important cyanobacterial bioactive compounds are outlined in the chapter along with commercial products currently available on the market.


1967 ◽  
Vol 49 (3) ◽  
pp. 351-370 ◽  
Author(s):  
D. S. Hoare ◽  
S. L. Hoare ◽  
R. B. Moore

Author(s):  
Zach Pollock ◽  
Camille Partin

The ~2.0-1.8 Ga (billion years old) Belcher Group on the Belcher Islands in Nunavut provide a unique opportunity for studying Paleoproterozoic geobiology. The Belcher Group includes a sequence of low metamorphic grade peritidal carbonate rocks that preserve putative microbiota, as first described by Hofmann and Jackson (1969). Microbial mats, including stromatolites, are abundant in the peritidal carbonate succession. Additionally, morphologies possibly related to blue-green algae were first described in granular iron formation rocks of the Belcher Group by Moore (1918). The Belcher Group microbiota are a group of simple organisms, believed to be prokaryotic in nature. Microbiota morphologies include ellipsoids, spheroids, and filamentous chains of cells interpreted by previous workers to represent blue-green algae and acritarchs. Some microstructures are questionably biogenic and might be abiotic. The most significant field studies on the Belcher Group occurred from the late 1950s to the early 1980s, which provides the geological context for this study. This project aims to build on the previous work of H. Hofmann and others in the ‘60s and bring these microbiota into a modern context, drawing on the analytical advancements of the last 50 years. The main goal of the project is to determine if there is evidence that the microbiota are perhaps eukaryotic organisms. The emergence of eukaryotes is arguably the most significant geobiological event in Earth history, with eukaryotic cells believed to have evolved around 1.6 Ga (Knoll et al. 2006; Javaux and Lepot 2018), but some contentious fossils interpreted to represent eukaryotes have been dated to as early as 2.2 Ga (Retallack et al. 2013). In North America, the oldest discovered eukaryotic remains are around 1.5 Ga (Adam et al. 2017). If eukaryotic fossils were to be discovered in the Belcher Group, this would make them the oldest occurrence in North America. To test the hypothesis, samples from the microbiota-containing units were collected on the Belcher Islands. Both light microscopy and a collection of modern analytical techniques will be used to obtain high resolution images and chemical signatures of the microbiota and their biosignatures. Preliminary data from petrography, Raman Spectroscopy, and X-ray Photoelectron Spectroscopy (XPS) will be presented. Both Raman spectroscopy and XPS have been used as characterization tools in other studies looking at microbiota and organic matter remains (Qu et al. 2018; Arnarson and Keil 2001). Raman collects molecular and structural data from the sample, while XPS collects elemental chemical data. Both techniques are therefore particularly useful for identifying and characterizing organic carbon, which is the base of organic matter. References: Adam, Zachary R., Mark L. Skidmore, David W. Mogk, and Nicholas J. Butterfield. 2017. “A Laurentian Record of the Earliest Fossil Eukaryotes.” Geology 45 (5): 387–90. https://doi.org/10.1130/G38749.1. Arnarson, Thorarinn S., and Richard G. Keil. 2001. “Organic–Mineral Interactions in Marine Sediments Studied Using Density Fractionation and X-Ray Photoelectron Spectroscopy.” Organic Geochemistry 32 (12): 1401–15. https://doi.org/10.1016/S0146-6380(01)00114-0. Hofmann, H. J., and G. D. Jackson. 1969. “Precambrian (Aphebian) Microfossils from Belcher Islands, Hudson Bay.” Canadian Journal of Earth Sciences 6 (5): 1137–44. https://doi.org/10.1139/e69-115. Javaux, Emmanuelle J., and Kevin Lepot. 2018. “The Paleoproterozoic Fossil Record: Implications for the Evolution of the Biosphere during Earth’s Middle-Age.” Earth-Science Reviews 176 (January): 68–86. https://doi.org/10.1016/j.earscirev.2017.10.001. Knoll, A.H, E.J Javaux, D Hewitt, and P Cohen. 2006. “Eukaryotic Organisms in Proterozoic Oceans.” Philosophical Transactions of the Royal Society B: Biological Sciences 361 (1470): 1023–38. https://doi.org/10.1098/rstb.2006.1843. Moore, E. S. 1918. “The Iron-Formation on Belcher Islands, Hudson Bay, with Special Reference to Its Origin and Its Associated Algal Limestones.” The Journal of Geology 26 (5): 412–38. Qu, Yuangao, Shixing Zhu, Martin Whitehouse, Anders Engdahl, and Nicola McLoughlin. 2018. “Carbonaceous Biosignatures of the Earliest Putative Macroscopic Multicellular Eukaryotes from 1630 Ma Tuanshanzi Formation, North China.” Precambrian Research 304 (January): 99–109. https://doi.org/10.1016/j.precamres.2017.11.004. Retallack, Gregory J., Evelyn S. Krull, Glenn D. Thackray, and Dula Parkinson. 2013. “Problematic Urn-Shaped Fossils from a Paleoproterozoic (2.2Ga) Paleosol in South Africa.” Precambrian Research 235 (September): 71–87. https://doi.org/10.1016/j.precamres.2013.05.015.


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