scholarly journals Expression of the Avirulence Gene Avr9 of the Fungal Tomato Pathogen Cladosporium fulvum Is Regulated by the Global Nitrogen Response Factor NRF1

2001 ◽  
Vol 14 (3) ◽  
pp. 316-325 ◽  
Author(s):  
Alejandro Pérez-García ◽  
Sandor S. Snoeijers ◽  
Matthieu H. A. J. Joosten ◽  
Theo Goosen ◽  
Pierre J. G. M. De Wit
Keyword(s):  
Amino Acid ◽  
Zinc Finger ◽  
Avirulence Gene ◽  
Response Factor ◽  
Cladosporium Fulvum ◽  
Loss Of Function ◽  
Wild Type ◽  
In Planta ◽  
Nitrogen Response ◽  
Tomato Plants

Here we describe the role of the Cladosporium fulvum nitrogen response factor 1 (Nrf1) gene in regulation of the expression of avirulence gene Avr9 and virulence on tomato. The Nrf1 gene, which was isolated by a polymerase chain reaction-based strategy, is predicted to encode a protein of 918 amino acid residues. The protein contains a putative zinc finger DNA-binding domain that shares 98% amino acid identity with the zinc finger of the major nitrogen regulatory proteins AREA and NIT2 of Aspergillus nidulans and Neurospora crassa, respectively. Functional equivalence of Nrf1 to areA was demonstrated by complementation of an A. nidulans areA loss-of-function mutant with Nrf1. Nrf1-deficient transformants of C. fulvum obtained by homologous recombination were unable to utilize nitrate and nitrite as a nitrogen source. In contrast to what was observed in the C. fulvum wild-type, the Avr9 gene was no longer induced under nitrogen-starvation conditions in Nrf1-deficient strains. On susceptible tomato plants, the Nrf1-deficient strains were as virulent as wild-type strains of C. fulvum, although the expression of the Avr9 gene was strongly reduced. In addition, Nrf1-deficient strains were still avirulent on tomato plants containing the functional Cf-9 resistance gene, indicating that in planta, apparently sufficient quantities of stable AVR9 elicitor are produced. Our results suggest that the NRF1 protein is a major regulator of the Avr9 gene.

Identification of a DNA region required for growth of Pseudomonas syringae pv. tomato on tomato plants

1992 ◽  
Vol 38 (9) ◽  
pp. 883-890 ◽  
Author(s):  
Dennis P. Jackson ◽  
Douglas A. Gray ◽  
Vincent L. Morris ◽  
Diane A. Cuppels
Keyword(s):  
Organic Acids ◽  
Pseudomonas Syringae ◽  
Acid Metabolism ◽  
Carbon Sources ◽  
Hypersensitive Reaction ◽  
Wild Type ◽  
In Planta ◽  
Tomato Plants ◽  
Tartaric Acids ◽  
Nonpathogenic Strain

The prototrophic Pseudomonas syringae pv. tomato mutant DC3481, which is the result of a single-site Tn5 insertion, cannot grow and cause disease on tomato plants and cannot use the major organic acids of tomato, i.e., citric, malic, succinic, and tartaric acids, as sole carbon sources. Although nonpathogenic, strain DC3481 can still induce a hypersensitive reaction in nonhost plants. We have identified a 30-kb fragment of P. syringae pv. tomato wild-type DNA that can complement this mutant. EcoRI fragments from this region were subcloned and individually subjected to functional complementation analysis. The 3.8-kb fragment, which was the site of the Tn5 insertion, restored pathogenicity and the ability to use all the major organic acids of tomato as carbon sources. It shares sequence homology with several P. syringae pathovars but not other bacterial tomato pathogens. Our results indicate that sequences on the 3.8-kb EcoRI fragment are required for both the ability to grow on tomato leaves (and thus cause disease) and the utilization of carboxylic acids common to tomato. The 3.8-kb fragment may contain a sequence (or sequences) that regulates both traits. Key words: Pseudomonas syringae pv. tomato, phytopathogenicity, Tn5, tricarboxylic acid metabolism, bacterial speck, growth in planta.

scholarly journals A Polyamine Oxidase from Selaginella lepidophylla (SelPAO5) can Replace AtPAO5 in Arabidopsis through Converting Thermospermine to Norspermidine instead to Spermidine

Plants ◽  
2019 ◽  
Vol 8 (4) ◽  
pp. 99 ◽  
Author(s):  
G. H. M. Sagor ◽  
Tomonobu Kusano ◽  
Thomas Berberich
Keyword(s):  
Normal Values ◽  
Normal Growth ◽  
Polyamine Oxidase ◽  
Loss Of Function ◽  
Wild Type ◽  
In Planta ◽  
Selaginella Lepidophylla ◽  
Growth Phenotype ◽  
Polyamine Oxidases

Of the five polyamine oxidases in Arabidopsis thaliana, AtPAO5 has a substrate preference for the tetraamine thermospermine (T-Spm) which is converted to triamine spermidine (Spd) in a back-conversion reaction in vitro. A homologue of AtPAO5 from the lycophyte Selaginella lepidophylla (SelPAO5) back-converts T-Spm to the uncommon polyamine norspermidine (NorSpd) instead of Spd. An Atpao5 loss-of-function mutant shows a strong reduced growth phenotype when growing on a T-Spm containing medium. When SelPAO5 was expressed in the Atpao5 mutant, T-Spm level decreased to almost normal values of wild type plants, and NorSpd was produced. Furthermore the reduced growth phenotype was cured by the expression of SelPAO5. Thus, a NorSpd synthesis pathway by PAO reaction and T-Spm as substrate was demonstrated in planta and the assumption that a balanced T-Spm homeostasis is needed for normal growth was strengthened.

scholarly journals Molecular Characterization of eutF Mutants ofSalmonella typhimurium LT2 Identifies eutFLesions as Partial-Loss-of-Function tonB Alleles

1999 ◽  
Vol 181 (2) ◽  
pp. 368-374 ◽  
Author(s):  
Michael G. Thomas ◽  
George A. O’Toole ◽  
Jorge C. Escalante-Semerena
Keyword(s):  
Amino Acid ◽  
Molecular Characterization ◽  
Immunoblot Analysis ◽  
Phenotypic Characterization ◽  
Loss Of Function ◽  
Wild Type ◽  
Partial Loss ◽  
Acid Addition ◽  
Fusion Site

ABSTRACT The eutF locus of Salmonella typhimuriumLT2 was identified as a locus necessary for the utilization of ethanolamine as a sole carbon source. Initial models suggested that EutF was involved in either ethanolamine transport or was a transcriptional regulator of an ethanolamine transporter. Phenotypic characterization of eutF mutants suggested EutF was somehow involved in 1,2-propanediol, propionate, and succinate utilization. Here we provide evidence that two alleles defining the eutFlocus, Δ903 and eutF1115, are partial-loss-of-function tonB alleles. Both mutations were complemented by plasmids containing a wild-type allele of theEscherichia coli tonB gene. Immunoblot analysis using TonB monoclonal antibodies detected a TonB fusion protein in strains carrying eutF alleles. Molecular analysis of the Δ903 allele identified a deletion that resulted in the fusion of the 3′ end of tonB with the 3′ end oftrpA. In-frame translation of the tonB-trpAfusion resulted in the final 9 amino acids of TonB being replaced by a 45-amino-acid addition. We isolated a derivative of a strain carrying allele Δ903 that regained the ability to grow on ethanolamine as a carbon and energy source. The molecular characterization of the mutation that corrected the Eut−phenotype caused by allele Δ903 showed that the new mutation was a deletion of two nucleotides at the tonB-trpAfusion site. This deletion resulted in a frameshift that replaced the 45-amino-acid addition with a 5-amino-acid addition. This change resulted in a TonB protein with sufficient activity to restore growth on ethanolamine and eut operon expression to nearly wild-type levels. It was concluded that the observed EutF phenotypes were due to the partial loss of TonB function, which is proposed to result in reduced cobalamin and ferric siderophore transport in an aerobic environment; thus, the eutF locus does not exist.

scholarly journals Identification of a putative DNA-binding protein in Arabidopsis that acts as a susceptibility hub and interacts with multiple Pseudomonas syringae effectors

2020 ◽  
Author(s):  
Karl Schreiber ◽  
Jennifer D Lewis
Keyword(s):  
Pseudomonas Syringae ◽  
Transcriptional Profiling ◽  
Effector Proteins ◽  
Ribosomal Protein Genes ◽  
Loss Of Function ◽  
Wild Type ◽  
In Planta ◽  
Arabidopsis Protein ◽  
Wide Range

Phytopathogens use secreted effector proteins to suppress host immunity and promote pathogen virulence, and there is increasing evidence that the host-pathogen interactome comprises a complex network. In an effort to identify novel interactors of the Pseudomonas syringae effector HopZ1a, we performed a yeast two-hybrid screen that identified a previously uncharacterized Arabidopsis protein that we designate HopZ1a Interactor 1 (ZIN1). Additional analyses in yeast and in planta revealed that ZIN1 also interacts with several other P. syringae effectors. We show that an Arabidopsis loss-of-function zin1 mutant is less susceptible to infection by certain strains of P. syringae, while overexpression of ZIN1 results in enhanced susceptibility. Functionally, ZIN1 exhibits topoisomerase-like activity in vitro. Transcriptional profiling of wild-type and zin1 Arabidopsis plants inoculated with P. syringae indicated that while ZIN1 regulates a wide range of pathogen-responsive biological processes, the list of genes more highly expressed in zin1 versus wild-type plants was particularly enriched for ribosomal protein genes. Altogether, these data illuminate ZIN1 as a potential susceptibility hub that interacts with multiple effectors to influence the outcome of plant-microbe interactions.

scholarly journals Several One-Domain Zinc Finger µ-Proteins of Haloferax Volcanii Are Important for Stress Adaptation, Biofilm Formation, and Swarming

Genes ◽  
2019 ◽  
Vol 10 (5) ◽  
pp. 361 ◽  
Author(s):  
Chantal Nagel ◽  
Anja Machulla ◽  
Sebastian Zahn ◽  
Jörg Soppa
Keyword(s):  
Zinc Finger ◽  
Biofilm Formation ◽  
Synthetic Medium ◽  
Zinc Finger Proteins ◽  
Haloferax Volcanii ◽  
Deletion Mutants ◽  
Biological Functions ◽  
Loss Of Function ◽  
Wild Type ◽  
Single Exception

Zinc finger domains are highly structured and can mediate interactions to DNA, RNA, proteins, lipids, and small molecules. Accordingly, zinc finger proteins are very versatile and involved in many biological functions. Eukaryotes contain a wealth of zinc finger proteins, but zinc finger proteins have also been found in archaea and bacteria. Large zinc finger proteins have been well studied, however, in stark contrast, single domain zinc finger µ-proteins of less than 70 amino acids have not been studied at all, with one single exception. Therefore, 16 zinc finger µ-proteins of the haloarchaeon Haloferax volcanii were chosen and in frame deletion mutants of the cognate genes were generated. The phenotypes of mutants and wild-type were compared under eight different conditions, which were chosen to represent various pathways and involve many genes. None of the mutants differed from the wild-type under optimal or near-optimal conditions. However, 12 of the 16 mutants exhibited a phenotypic difference under at least one of the four following conditions: Growth in synthetic medium with glycerol, growth in the presence of bile acids, biofilm formation, and swarming. In total, 16 loss of function and 11 gain of function phenotypes were observed. Five mutants indicated counter-regulation of a sessile versus a motile life style in H. volcanii. In conclusion, the generation and analysis of a set of deletion mutants demonstrated the high importance of zinc finger µ-proteins for various biological functions, and it will be the basis for future mechanistic insight.

scholarly journals Role of Extracellular Polysaccharide and Endoglucanase in Root Invasion and Colonization of Tomato Plants by Ralstonia solanacearum

1997 ◽  
Vol 87 (12) ◽  
pp. 1264-1271 ◽  
Author(s):  
Elke Saile ◽  
Jeff A. McGarvey ◽  
Mark A. Schell ◽  
Timothy P. Denny
Keyword(s):  
Ralstonia Solanacearum ◽  
Extracellular Polysaccharide ◽  
Wild Type ◽  
In Planta ◽  
Tomato Plants ◽  
Potted Plants ◽  
Stem Infection ◽  
Soil Infestation ◽  
Plant Stem

Ralstonia solanacearum is a soilborne plant pathogen that normally invades hosts through their roots and then systemically colonizes aerial tissues. Previous research using wounded stem infection found that the major factor in causing wilt symptoms was the high-molecular-mass acidic extracellular polysaccharide (EPS I), but the β-1,4-endoglucanase (EG) also contributes to virulence. We investigated the importance of EPS I and EG for invasion and colonization of tomato by infesting soil of 4-week-old potted plants with either a wild-type derivative or genetically well-defined mutants lacking EPS I, EG, or EPS I and EG. Bacteria of all strains were recovered from surface-disinfested roots and hypocotyls as soon as 4 h after inoculation; that bacteria were present internally was confirmed using immunofluorescence microscopy. However, the EPS-minus mutants did not colonize stems as rapidly as the wild type and the EG-minus mutant. Inoculations of wounded petioles also showed that, even though the mutants multiplied as well as the wild type in planta, EPS-minus strains did not spread as well throughout the plant stem. We conclude that poor colonization of stems by EPS-minus strains after petiole inoculation or soil infestation is due to reduced bacterial movement within plant stem tissues.

scholarly journals Assignment of Amino Acid Residues of the AVR9 Peptide of Cladosporium fulvum That Determine Elicitor Activity

1997 ◽  
Vol 10 (7) ◽  
pp. 821-829 ◽  
Author(s):  
Miriam Kooman-Gersmann ◽  
Ralph Vogelsang ◽  
Erwin C. M. Hoogendijk ◽  
Pierre J. G. M. De Wit
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Resistance Gene ◽  
Expression System ◽  
Potato Virus X ◽  
Cladosporium Fulvum ◽  
Amino Acid Residues ◽  
Tomato Plants ◽  
Loop Region ◽  
Relationship Of

The AVR9 peptide of Cladosporium fulvum is an elicitor of the hypersensitive response in tomato plants carrying the Cf-9 resistance gene (MM-Cf9). To determine the structure-activity relationship of the AVR9 peptide, amino acids important for AVR9 elicitor activity were identified by independently substituting each amino acid of AVR9 by alanine. In addition, surface-exposed amino acid residues of AVR9 were substituted by other amino acids. Activity of the mutant Avr9 constructs was studied by expressing the constructs in MM-Cf9 tomato plants, using the potato virus X (PVX) expression system and assessing the severity of necrosis induced by each PVX∷Avr9 construct. This allowed direct identification of amino acid residues of AVR9 that are essential for elicitor activity. We identified amino acid substitutions that resulted in AVR9 mutants with higher, similar, or lower elicitor activity compared to the wild-type AVR9 peptide. Some mutants had completely lost elicitor activity. A selection of peptides, representing different categories, was isolated and injected into leaves of MM-Cf9 plants. The necrosis-inducing activity of the isolated peptides correlated well with the necrosis induced by the corresponding PVX∷Avr9 derivatives. Based on the necrosis-inducing activity of the mutant AVR9 peptides and the global structure of AVR9, we assigned sites in AVR9 that are important for its necrosis-inducing activity. We postulate that the “hydrophobic β-loop” region of the AVR9 peptide is crucial for necrosis-inducing activity in tomato plants that carry the Cf-9 resistance gene.

scholarly journals The In Planta-Produced Extracellular Proteins ECP1 and ECP2 of Cladosporium fulvum Are Virulence Factors

1997 ◽  
Vol 10 (6) ◽  
pp. 725-734 ◽  
Author(s):  
Richard Laugé ◽  
Matthieu H. A. J. Joosten ◽  
Guido F. J. M. Van den Ackerveken ◽  
Henk W. J. Van den Broek ◽  
Pierre J. G. M. De Wit
Keyword(s):  
Type Strain ◽  
Wild Type Strain ◽  
Pathogenic Fungus ◽  
Leaf Tissue ◽  
Defense Responses ◽  
Gene Replacement ◽  
Extracellular Proteins ◽  
Cladosporium Fulvum ◽  
Wild Type ◽  
In Planta

The two extracellular proteins ECP1 and ECP2 are abundantly secreted by the plant-pathogenic fungus Cladosporium fulvum during colonization of the intercellular space of tomato leaves. We examined the involvement of both proteins in pathogenicity and virulence of this fungus. ECP1-deficient, ECP2-deficient, and ECP1/ECP2- deficient isogenic C. fulvum strains were created by targeted gene replacement. Upon inoculation onto susceptible 6-week-old tomato plants, all three mutants showed reduced virulence. Deficiency in ECP2 resulted in a strain that poorly colonized the leaf tissue and secreted lower amounts of the in planta-produced ECP3, AVR4, and AVR9 proteins than the wild-type strain. The ECP2-deficient strain produced little emerging mycelium and few conidia. Deficiency in ECP1 did not significantly modify colonization of the leaf tissue, but reduced secretion of in planta-produced proteins. The ECP1-deficient strain emerged from stomata of the lower epidermis, but failed to sporulate as abundantly as the wild-type strain. A strain deficient in both ECP1 and ECP2 proteins had a phenotype similar to that of the ECP2-deficient strain. Accumulation of pathogenesis-related proteins and induction of late responses, such as leaf desiccation and abscission, occurred more quickly and more severely in tomato after inoculation with the ECP1-, ECP2-, and ECP1/ECP2-deficient strains than after inoculation with the wild-type strain. Moreover, partial collapse of stomatal guard cells occurred at emergence of the ECP2-deficient strain. These results indicate that the ECP1 and ECP2 proteins play a role in virulence of C. fulvum on tomato and suggest that both are involved in suppression of host defense responses.

scholarly journals Transcriptome Sequencing Uncovers the Avr5 Avirulence Gene of the Tomato Leaf Mold Pathogen Cladosporium fulvum

2014 ◽  
Vol 27 (8) ◽  
pp. 846-857 ◽  
Author(s):  
Carl H. Mesarich ◽  
Scott A. Griffiths ◽  
Ate van der Burgt ◽  
Bilal Ökmen ◽  
Henriek G. Beenen ◽  
...  
Keyword(s):  
Fungal Pathogen ◽  
Transcriptome Sequencing ◽  
Tomato Leaf ◽  
Avirulence Gene ◽  
Cladosporium Fulvum ◽  
Rna Seq ◽  
In Planta ◽  
Cysteine Rich Protein ◽  
Tomato Leaf Mold ◽  
Susceptible Tomato

The Cf-5 gene of tomato confers resistance to strains of the fungal pathogen Cladosporium fulvum carrying the avirulence gene Avr5. Although Cf-5 has been cloned, Avr5 has remained elusive. We report the cloning of Avr5 using a combined bioinformatic and transcriptome sequencing approach. RNA-Seq was performed on the sequenced race 0 strain (0WU; carrying Avr5), as well as a race 5 strain (IPO 1979; lacking a functional Avr5 gene) during infection of susceptible tomato. Forty-four in planta–induced C. fulvum candidate effector (CfCE) genes of 0WU were identified that putatively encode a secreted, small cysteine-rich protein. An expressed transcript sequence comparison between strains revealed two polymorphic CfCE genes in IPO 1979. One of these conferred avirulence to IPO 1979 on Cf-5 tomato following complementation with the corresponding 0WU allele, confirming identification of Avr5. Complementation also led to increased fungal biomass during infection of susceptible tomato, signifying a role for Avr5 in virulence. Seven of eight race 5 strains investigated escape Cf-5-mediated resistance through deletion of the Avr5 gene. Avr5 is heavily flanked by repetitive elements, suggesting that repeat instability, in combination with Cf-5-mediated selection pressure, has led to the emergence of race 5 strains deleted for the Avr5 gene.

scholarly journals High-Frequency Reversion of Geminivirus Replication Protein Mutants during Infection

2007 ◽  
Vol 81 (20) ◽  
pp. 11005-11015 ◽  
Author(s):  
Gerardo Arguello-Astorga ◽  
J. Trinidad Ascencio-Ibáñez ◽  
Mary Beth Dallas ◽  
Beverly M. Orozco ◽  
Linda Hanley-Bowdoin
Keyword(s):  
Amino Acid ◽  
Rapid Evolution ◽  
Replication Protein ◽  
Wild Type ◽  
In Planta ◽  
Site Mutation ◽  
Protein Mutants ◽  
Equivalent Residue ◽  
Division Cell ◽  
Leaf Curl Virus

ABSTRACT The geminivirus replication protein AL1 interacts with retinoblastoma-related protein (RBR), a key regulator of the plant division cell cycle, to induce conditions permissive for viral DNA replication. Previous studies of tomato golden mosaic virus (TGMV) AL1 showed that amino acid L148 in the conserved helix 4 motif is critical for RBR binding. In this work, we examined the effect of an L148V mutation on TGMV replication in tobacco cells and during infection of Nicotiana benthamiana plants. The L148V mutant replicated 100 times less efficiently than wild-type TGMV in protoplasts but produced severe symptoms that were delayed compared to those of wild-type infection in plants. Analysis of progeny viruses revealed that the L148V mutation reverted at 100% frequency in planta to methionine, leucine, isoleucine, or a second-site mutation depending on the valine codon in the initial DNA sequence. Similar results were seen with another geminivirus, cabbage leaf curl virus (CaLCuV), carrying an L145A mutation in the equivalent residue. Valine was the predominant amino acid recovered from N. benthamiana plants inoculated with the CaLCuV L145A mutant, while threonine was the major residue in Arabidopsis thaliana plants. Together, these data demonstrated that there is strong selection for reversion of the TGMV L148V and CaLCuV L145A mutations but that the nature of the selected revertants is influenced by both the viral background and host components. These data also suggested that high mutation rates contribute to the rapid evolution of geminivirus genomes in plants.

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