scholarly journals Rare and fleeting: an example of interspecific recombination in animal mitochondrial DNA

2007 ◽  
Vol 3 (5) ◽  
pp. 554-557 ◽  
Author(s):  
Kate L Ciborowski ◽  
Sofía Consuegra ◽  
Carlos García de Leániz ◽  
Mark A Beaumont ◽  
Jinliang Wang ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Atlantic Salmon ◽  
Salmo Trutta ◽  
Sequence Divergence ◽  
F1 Hybrid ◽  
Phylogenetic Studies ◽  
Recombinant Haplotype ◽  
The Individual ◽  
Historical Variation ◽  
Interspecific Recombination

Recombination is thought to occur only rarely in animal mitochondrial DNA (mtDNA). However, detection of mtDNA recombination requires that cells become heteroplasmic through mutation, intramolecular recombination or ‘leakage’ of paternal mtDNA. Interspecific hybridization increases the probability of detecting mtDNA recombinants due to higher levels of sequence divergence and potentially higher levels of paternal leakage. During a study of historical variation in Atlantic salmon ( Salmo salar ) mtDNA, an individual with a recombinant haplotype containing sequence from both Atlantic salmon and brown trout ( Salmo trutta ) was detected. The individual was not an F1 hybrid but it did have an unusual nuclear genotype which suggested that it was a later-generation backcross. No other similar recombinant haplotype was found from the same population or three neighbouring Atlantic salmon populations in 717 individuals collected during 1948–2002. Interspecific recombination may increase mtDNA variability within species and can have implications for phylogenetic studies.

scholarly journals Impaired gonadal development in the sea trout (Salmo trutta) × Atlantic salmon (Salmo salar) F1 hybrid females

2016 ◽  
Vol 45 (3) ◽  
Author(s):  
Elżbieta Ziomek ◽  
Marta Dębowska ◽  
Piotr Hliwa ◽  
Konrad Ocalewicz
Keyword(s):  
Atlantic Salmon ◽  
Salmo Salar ◽  
Salmo Trutta ◽  
Parental Species ◽  
Gonadal Development ◽  
Hybrid Progeny ◽  
F1 Hybrid ◽  
Sea Trout ◽  
Atlantic Salmon Salmo Salar

AbstractDespite large karyotype differences between parental species, the hybrid progeny of the sea trout (

Present Status of the Salmonids Atlantic Salmon and Sea-Trout in the Dutch Part of the River Rhine

1994 ◽  
Vol 29 (3) ◽  
pp. 37-41 ◽  
Author(s):  
W. G. Cazemier
Keyword(s):  
Atlantic Salmon ◽  
Salmo Trutta ◽  
Natural Populations ◽  
River Rhine ◽  
Sea Trout ◽  
The Past ◽  
The North ◽  
Trout Population ◽  
The North Sea ◽  
Heavy Pollution

In the past, the anadromous salmonids, Atlantic salmon (Salmo salar) and sea-trout (Salmo trutta), have formed natural populations in the river Rhine. From the beginning of the nineteenth century onwards, the greater part of the drainage area of the river has been gradually altered from a more or less rural and agricultural area, into a highly industrialised one with subsequent industrialisation, river-engineering and heavy pollution. These developments are considered to be the major cause for the disappearance of the populations of anadromous salmonid fish in the 1950s. The water quality has recovered significantly during the past 25 years. From about 1975 onwards, this process gave rise to a recovery of the anadromous trout population. Results of recent studies of the sea-trout migration pattern are presented. They reveal that nowadays these salmonids can complete their up- and downstream migrations from the North Sea to places, situated at hundreds of kilometres upward the river and vica versa. The numbers of recorded Atlantic salmon and catch locations in inland waters are presented. They show a significant increase since 1989. These phenomena can be understood as promising signs of the recovery of the Rhine aquatic ecosystem.

scholarly journals Higher mortality of the less suitable brown trout host compared to the principal Atlantic salmon host when infested with freshwater pearl mussel (Margaritifera margaritifera) glochidia

2021 ◽  
Author(s):  
Janhavi Marwaha ◽  
Per Johan Jakobsen ◽  
Sten Karlsson ◽  
Bjørn Mejdell Larsen ◽  
Sebastian Wacker
Keyword(s):  
Atlantic Salmon ◽  
Brown Trout ◽  
Host Species ◽  
Salmo Trutta ◽  
The Other ◽  
Margaritifera Margaritifera ◽  
Pearl Mussel ◽  
Suitable Host ◽  
Freshwater Pearl Mussel ◽  
Host Interaction

AbstractThe freshwater pearl mussel (Margaritifera margaritifera) is a highly host-specific parasite, with an obligate parasitic stage on salmonid fish. Atlantic salmon (Salmo salar) and brown trout (Salmo trutta f. trutta and Salmo trutta f. fario) are the only hosts in their European distribution. Some M. margaritifera populations exclusively infest either Atlantic salmon or brown trout, while others infest both hosts with one salmonid species typically being the principal host and the other a less suitable host. Glochidial abundance, prevalence and growth are often used as parameters to measure host suitability, with the most suitable host species displaying the highest parameters. However, it is not known if the degree of host specialisation will negatively influence host fitness (virulence) among different host species. In this study we examined the hypothesis that glochidial infestation would result in differential virulence in two salmonid host species and that lower virulence would be observed on the most suitable host. Atlantic salmon and brown trout were infested with glochidia from two M. margaritifera populations that use Atlantic salmon as their principal host, and the difference in host mortality among infested and control (sham infested) fish was examined. Higher mortality was observed in infested brown trout (the less suitable host) groups, compared to the other test groups. Genetic assignment was used to identify offspring from individual mother mussels. We found that glochidia from individual mothers can infest both the salmonid hosts; however, some mothers displayed a bias towards either salmon or trout. We believe that the differences in host-dependent virulence and the host bias displayed by individual mothers were a result of genotype × genotype interactions between the glochidia and their hosts, indicating that there is an underlying genetic component for this parasite-host interaction.

Rediscovery of Rhacophorus yaoshanensis and Theloderma kwangsiensis at their type localities after five decades

Zootaxa ◽  
2018 ◽  
Vol 4379 (4) ◽  
pp. 484 ◽  
Author(s):  
WEICAI CHEN ◽  
XIAOWEN LIAO ◽  
SHICHU ZHOU ◽  
YUNMING MO ◽  
YONG HUANG
Keyword(s):  
Mitochondrial Dna ◽  
16S Rrna ◽  
Phylogenetic Relationships ◽  
New Record ◽  
Nature Reserve ◽  
Guangxi Province ◽  
Preliminary Assessment ◽  
Phylogenetic Studies ◽  
Pairwise Divergence ◽  
High Support

Rhacophorus yaoshanensis Liu & Hu, 1962 and Theloderma kwangsiensis Liu & Hu, 1962 were described by Liu & Hu (1962) based on two specimens and one specimen, respectively, from the Dayaoshan Ranges, Guangxi, China. Since these two species were described, no additional specimens have been collected from their type localities, presenting an issue for phylogenetic studies of the genera. Five decades later, we have rediscovered R. yaoshanensis and T. kwangsiensis from their type localities. In this paper, we re-describe the two species and conduct a preliminary assessment of their phylogenetic relationships using two mitochondrial DNA genes (12S and 16S rRNA). The results indicate with high support that R. yaoshanensis is closely related to Rhacophorus pinglongensis. Theloderma kwangsiensis is nested within Theloderma corticale, with only 0.0–0.6% pairwise divergence, a level typical of intraspecific variation. Based on both molecular and morphological analyses, we further confirm that T. kwangsiensis is a synonym of T. corticale. Shiwandashan National Nature Reserve, Guangxi Province, China, is a new record for T. corticale. 

scholarly journals Genetic Diversities and Historical Dynamics of Native Ethiopian Horse Populations (Equus caballus) Inferred from Mitochondrial DNA Polymorphisms

Genes ◽  
2021 ◽  
Vol 12 (2) ◽  
pp. 155
Author(s):  
Kefena Effa ◽  
Sonia Rosenbom ◽  
Jianlin Han ◽  
Tadelle Dessie ◽  
Albano Beja-Pereira
Keyword(s):  
Genetic Diversity ◽  
Mitochondrial Dna ◽  
Genetic Differentiation ◽  
Sequence Divergence ◽  
Dna Polymorphisms ◽  
Base Pairs ◽  
Feral Horses ◽  
Domestic Horses ◽  
D Loop ◽  
Diversity Estimates

Matrilineal genetic diversity and relationship were investigated among eight morphologically identified native Ethiopian horse populations using polymorphisms in 46 mtDNA D-loop sequences (454 base pairs). The horse populations identified were Abyssinian, Bale, Borana, Horro, Kafa, Kundido feral horses, Ogaden and Selale. Mitochondrial DNA D-loop sequences were characterized by 15 variable sites that defined five different haplotypes. All genetic diversity estimates, including Reynolds’ linearized genetic distance, genetic differentiation (FST) and nucleotide sequence divergence (DA), revealed a low genetic differentiation in native Ethiopian horse populations. However, Kundido feral and Borana domestic horses were slightly diverged from the rest of the Ethiopian horse populations. We also tried to shed some light on the matrilineal genetic root of native Ethiopian horses from a network constructed by combining newly generated haplotypes and reference haplotypes deposited in the GenBank for Eurasian type Turkish Anatolian horses that were used as a genetic conduit between Eurasian and African horse populations. Ninety-two haplotypes were generated from the combined Ethio-Eurasian mtDNA D-loop sequences. A network reconstructed from the combined haplotypes using Median-Joining algorithm showed that haplotypes generated from native Ethiopian horses formed separate clusters. The present result encourages further investigation of the genetic origin of native African horses by retrieving additional mtDNA sequences deposited in the GenBank for African and Eurasian type horses.

scholarly journals Recombination within the HLA-D region. Correlation of molecular genotyping with functional data.

1984 ◽  
Vol 160 (1) ◽  
pp. 222-238 ◽  
Author(s):  
M A Robinson ◽  
E O Long ◽  
A H Johnson ◽  
R J Hartzman ◽  
B Mach ◽  
...  
Keyword(s):  
Functional Data ◽  
Southern Blot Analysis ◽  
Hla Typing ◽  
Subtle Difference ◽  
Molecular Genotyping ◽  
Recombinant Haplotype ◽  
Allelic Differences ◽  
D Region ◽  
The Individual ◽  
Hla Haplotypes

Molecular genotyping of the HLA-D/DR region in a family correlated with serologic and cellular typing data. It was further possible to predict a subtle difference in SB region-related functions from such molecular studies. A family that included an individual who inherited an HLA haplotype with a paternal recombination between HLA-B and the HLA-D/DR region was identified by classic HLA typing techniques. Segregation of HLA-D/DR region genes in this family was studied by Southern blot analysis using cDNA probes for DR alpha, DR beta, DC alpha, DC beta, and SB beta. Restriction enzyme fragment polymorphisms observed for every gene tested were in concordance with assigned HLA haplotypes (including the individual known to have inherited a paternal recombinant haplotype) with one exception: two HLA identical siblings were observed to have different SB beta restriction fragment patterns. Further testing revealed that one individual inherited a maternal HLA haplotype recombinant between the HLA-D/DR region and SB beta. Although both maternal SB alleles typed as SB4, allelic differences could be detected cellularly by primed lymphocytes and by the differential expression of a class II cell surface antigen using monoclonal antibody. Therefore, predicted and nonpredicted recombinant haplotypes were detected in a family by molecular genotyping.

Unidirectional Natural Hybridization between Brown Trout (Salmo trutta) and Atlantic Salmon (S. salar) in Newfoundland

1992 ◽  
Vol 49 (9) ◽  
pp. 1953-1958 ◽  
Author(s):  
Colin McGowan ◽  
William S. Davidson
Keyword(s):  
Atlantic Salmon ◽  
Brown Trout ◽  
Salmo Trutta ◽  
Dna Analysis ◽  
Juvenile Fish ◽  
Natural Hybridization ◽  
Major Influence ◽  
Isolating Mechanisms ◽  
Brown Trout Salmo Trutta ◽  
Sexually Mature

Protein electrophoresis and mitochondrial DNA analysis were used to detect the frequency and direction of natural hybridization between brown trout (Salmo trutta) and Atlantic salmon (S. salar) in nine Newfoundland rivers. In total, 37 hybrids were discovered in a sample of 792 juvenile fish for a regional frequency of 4.67%. Local frequencies ranged from 0.00 to 18.75% and were significantly heterogeneous. All of the hybrids sampled were produced from matings between female brown trout and male Atlantic salmon. Possible reasons for the breakdown of prereproductive isolating mechanisms between these species are considered. Reproductive characteristics of the populations involved appear to have a major influence on the dynamics of hybridization between these species in Newfoundland. It is proposed that an abundance of sexually mature Atlantic salmon parr in Newfoundland streams is responsible for both the frequency and direction of hybridization observed in this study.

Multiple Haemoglobins of the Atlantic Salmon (Salmo salar)

1968 ◽  
Vol 25 (12) ◽  
pp. 2651-2663 ◽  
Author(s):  
N. P. Wilkins
Keyword(s):  
Life Cycle ◽  
Atlantic Salmon ◽  
Salmo Salar ◽  
Gel Electrophoresis ◽  
Initial Increase ◽  
Small Fish ◽  
Starch Gel Electrophoresis ◽  
Complete Development ◽  
Starch Gel ◽  
The Individual

The haemoglobins of over 500 salmon of different lengths, from Scotland, Greenland, and Canada have been analysed by vertical starch–gel electrophoresis at pH 8.1. Complex ontogenetic variations, involving an initial increase and later reduction in the number of fractions evident, have been observed among the anodally migrating haemoglobins. The variations observed have been correlated with changes in length, and the complete development of the anodal haemoglobin complex from the single fraction of small fish to the nine-fraction pattern of adults is outlined. The individual haemoglobin fractions appear to represent structurally distinct molecules whose regulated occurrence at different phases of the life cycle is discussed at the individual and population levels.

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