scholarly journals Fine stratification of microbial communities through a metagenomic profile of the photic zone

2017 ◽  
Author(s):  
Jose M. Haro-Moreno ◽  
Mario López-Pérez ◽  
José R. de la Torre ◽  
Antonio Picazo ◽  
Antonio Camacho ◽  
...  
Keyword(s):  
Community Structure ◽  
Vertical Distribution ◽  
Water Column ◽  
Physicochemical Parameters ◽  
Major Element ◽  
Single Gene ◽  
Single Point ◽  
Photic Zone ◽  
Small Depth ◽  
Sar11 Clade

ABSTRACTMost marine metagenomic studies of the marine photic zone analyze only samples taken at one or two depths. However, when the water column is stratified, physicochemical parameters change dramatically over relatively short depth intervals. We sampled the photic water column every 15m depth at a single point of an off-shore Mediterranean site during a period of strong stratification (early autumn) to evaluate the effects of small depth increases on the microbiome. Using genomic assembly and metagenomic read recruitment, we found major shifts in the community structure over small variations of depth, with most microbes showing a distribution limited to layers approximately 30 meters thick (stenobathic). Only some representatives of the SAR11 clade and the Sphingomonadaceae appeared to be eurybathic, spanning a greater range of depths. These results were confirmed by studying a single gene (rhodopsin) for which we also found narrow depth distributions. Our results highlight the importance of considering vertical distribution as a major element when analyzing the presence of marine clades and species or comparing the microbiome present at different locations.

scholarly journals Community structure and vertical distribution of oncaeid copepods in Tosa Bay, southern Japan

2009 ◽  
Vol 89 (3) ◽  
pp. 491-498 ◽  
Author(s):  
Yuichiro Nishibe ◽  
Yuuichi Hirota ◽  
Hiroshi Ueda
Keyword(s):  
Community Structure ◽  
Vertical Distribution ◽  
Water Column ◽  
Distribution Patterns ◽  
Depth Range ◽  
Tosa Bay ◽  
Southern Japan ◽  
Hydrographic Conditions ◽  
Epipelagic Zone ◽  
The Vertical Distribution

Community structure and vertical distribution of oncaeid copepods were investigated at an offshore site in Tosa Bay, southern Japan. Samples were collected with a 0.063 mm closing type net from eight discrete layers between the surface and 500 m depth in August and November 2005. A total of 45 species and three form variants belonging to the genera Triconia, Oncaea, Spinoncaea, Conaea and Epicalymma were identified. The greatest number of species was consistently found in the lower epipelagic zone, at 50–100 m. The vertical distribution patterns of oncaeid copepods were similar between August and November, with the highest abundances in the upper epipelagic zone above the thermocline. The oncaeid maxima corresponded with the depth where appendicularians occurred in high numbers. Dominant species in the water column (0–500 m) were O. venusta small form, O. media, O. scottodicarloi, O. waldemari, O. zernovi, O. tregoubovi, S. ivlevi, S. tenuis and T. conifera. The vertical succession of species composition was almost the same between August and November, although several species showed a downward shift of their depth-range to some extent in November. The oncaeid copepod community could be differentiated into three distinct groups according to the depth layers, each corresponding to different hydrographic conditions in the water column.

UV radiation effects on the embryos of anchoveta (Engraulis ringens) and common sardine (Strangomera bentincki) off central Chile

2016 ◽  
Vol 67 (2) ◽  
pp. 195 ◽  
Author(s):  
P. Vásquez ◽  
A. Llanos-Rivera ◽  
L. R. Castro ◽  
C. Fernandez
Keyword(s):  
Vertical Distribution ◽  
Water Column ◽  
Radiation Effects ◽  
Hatching Success ◽  
Sublethal Effects ◽  
Ultraviolet B ◽  
Uvb Radiation ◽  
Central Chile ◽  
Fish Embryos ◽  
Engraulis Ringens

It has been proposed that current levels of ultraviolet B (UVB) radiation could cause lethal or sublethal effects on fish embryos located in the upper layers of the water column. Observed levels of UVB off central Chile (36°S, 73°W) indicate that planktonic fish embryos could be exposed to harmful UVB radiation. From July 2011 to January 2012 embryos from anchoveta (Engraulis ringens) and common sardine (Strangomera bentincki) were used to test experimentally whether the UVB levels in central Chile produce lethal or sublethal effects in epipelagic fish embryos. Simultaneously, whether the embryos might be exposed to harmful UVB levels in the field was investigated. Our experimental results show that UVB may cause a decrease in hatching success, changes in buoyancy and embryonic malformations. These results, along with the observed vertical distribution of embryos and UVB radiation levels in the field during late spring suggest that lethal and sublethal effects may be occurring in the embryos of both species.

Diel vertical distribution of early marine phase juvenile pink salmon (Oncorhynchus gorbuscha) and behaviour when exposed to salmon louse (Lepeophtheirus salmonis)

2011 ◽  
Vol 89 (9) ◽  
pp. 796-807 ◽  
Author(s):  
S. Tang ◽  
A.G. Lewis ◽  
M. Sackville ◽  
L. Nendick ◽  
C. DiBacco ◽  
...  
Keyword(s):  
Vertical Distribution ◽  
Water Column ◽  
Pink Salmon ◽  
Distribution Patterns ◽  
Oncorhynchus Gorbuscha ◽  
Lepeophtheirus Salmonis ◽  
Night Time ◽  
Pink Salmon Oncorhynchus Gorbuscha ◽  
Salmon Louse ◽  
Seawater Acclimation

We observed diel vertical migration patterns in juvenile pink salmon ( Oncorhynchus gorbuscha (Walbaum, 1792)) and tested the hypothesis that fish behaviour is altered by exposure to sea lice copepodids. Experiments involved replicated field deployments of a large (9 m) plankton column, which provided a vertical distribution enclosure under natural light and salinity conditions. Diel vertical distributions of juvenile pink salmon were observed during the first 3 weeks of seawater acclimation in both the presence and the absence of the ectoparasitic salmon louse ( Lepeophtheirus salmonis (Krøyer, 1838)). Immediately upon entering seawater, juvenile pink salmon preferred the top 1 m of the water column, but they moved significantly deeper down the vertical water column as seawater acclimation time increased. A significant diel migration pattern was observed, which involved a preference for the surface at night-time, compared with daytime. When fish in the column were exposed to L. salmonis copepodids for 3 h, 43%–62% of fish became infected, fish expanded their vertical distribution range, and significant changes in vertical distribution patterns were observed.

scholarly journals Diatoms as a paleoproductivity proxy in the NW Iberian coastal upwelling system (NE Atlantic)

2017 ◽  
Vol 14 (5) ◽  
pp. 1165-1179 ◽  
Author(s):  
Diana Zúñiga ◽  
Celia Santos ◽  
María Froján ◽  
Emilia Salgueiro ◽  
Marta M. Rufino ◽  
...  
Keyword(s):  
Water Column ◽  
Surface Sediment ◽  
Sediment Trap ◽  
Coastal Upwelling ◽  
Late Summer ◽  
Early Summer ◽  
Marine Diatom ◽  
Photic Zone ◽  
Upwelling System ◽  
Water Column Stratification

Abstract. The objective of the current work is to improve our understanding of how water column diatom's abundance and assemblage composition is seasonally transferred from the photic zone to seafloor sediments. To address this, we used a dataset derived from water column, sediment trap and surface sediment samples recovered in the NW Iberian coastal upwelling system. Diatom fluxes (2.2 (±5.6) 106 valves m−2 d−1) represented the majority of the siliceous microorganisms sinking out from the photic zone during all studied years and showed seasonal variability. Contrasting results between water column and sediment trap diatom abundances were found during downwelling periods, as shown by the unexpectedly high diatom export signals when diatom-derived primary production achieved their minimum levels. They were principally related to surface sediment remobilization and intense Minho and Douro river discharge that constitute an additional source of particulate matter to the inner continental shelf. In fact, contributions of allochthonous particles to the sinking material were confirmed by the significant increase of both benthic and freshwater diatoms in the sediment trap assemblage. In contrast, we found that most of the living diatom species blooming during highly productive upwelling periods were dissolved during sinking, and only those resistant to dissolution and the Chaetoceros and Leptocylindrus spp. resting spores were susceptible to being exported and buried. Furthermore, Chaetoceros spp. dominate during spring–early summer, when persistent northerly winds lead to the upwelling of nutrient-rich waters on the shelf, while Leptocylindrus spp. appear associated with late-summer upwelling relaxation, characterized by water column stratification and nutrient depletion. These findings evidence that the contributions of these diatom genera to the sediment's total marine diatom assemblage should allow for the reconstruction of different past upwelling regimes.

scholarly journals Visualizations of personal social networks on Facebook and community structure: an exploratory study

2017 ◽  
Author(s):  
Christina Gkini ◽  
Alexios Brailas
Keyword(s):  
Social Networks ◽  
Community Structure ◽  
Single Point ◽  
Community Formation ◽  
Structure Pattern ◽  
Diffusion Of Information ◽  
Qualitative Interpretation ◽  
Network Topologies ◽  
Personal Social Networks ◽  
And Diffusion

We studied the community structure pattern in the visualizations of ten personal social networks on Facebook at a single point in time. It seems to be a strong tendency towards community formation in online personal, social networks: somebody’s friends are usually also friends between them, forming subgroups of more densely connected nodes. Research on community structure in social networks usually focuses on the networks’ statistical properties. There is a need for qualitative studies bridging the gap between network topologies and their sociological implications. To this direction, visual representations of personal networks in social media could be a valuable source of empirical data for qualitative interpretation. Most of the personal social networks’ visualizations in the present study are very highly clustered with densely-knit overlapping subgroups of friends and interconnected between them through wide bridges. This network topology pattern seems to be quite efficient, allowing for a fast spread and diffusion of information across the whole social network.

scholarly journals Patterns of distribution and abundance of larval phosichthyidae (actinopterygii, stomiiformes) in southeastern Brazilian waters

2011 ◽  
Vol 59 (3) ◽  
pp. 213-229 ◽  
Author(s):  
Cássia Gôngora Goçalo ◽  
Mario Katsuragawa ◽  
Ilson Carlos Almeida da Silveira
Keyword(s):  
Vertical Distribution ◽  
Water Column ◽  
Vertical Migration ◽  
Diel Vertical Migration ◽  
Distribution Patterns ◽  
Southeastern Brazil ◽  
Patterns Of Distribution ◽  
Oceanic Region ◽  
Brazil Current ◽  
Horizontal And Vertical Distribution

Horizontal and vertical distribution patterns and abundance of larval phosichthyids were investigated from oblique and depth-stratified towns off Southeastern brazilian waters, from São Tomé cape (41ºW.; 22ºS.) to São Sebastião island (45ºW.; 24ºS.). The sampling was performed during two cruises (January/2002 -summer; August/2002 -winter). Overall 538 larvae of Phosichthyidae were collected during summer and 158 in the winter. Three species, Pollichthys mauli, Vinciguerria nimbaria and Ichthyioccoccus sp. occurred in the area, but Ichthyioccoccus sp. was extremely rare represented by only one specimen, caught in the oceanic region during the summer. Geographically, larval were concentrated in the oceanic region, and vertically distributed mainly between the surface and 80 m depth in the summer and winter. Larvae were more abundant during the night, performing a diel vertical migration in the water column. The results suggest that the meandering and eddies of Brazil Current play important role on the transport and distribution patterns of larval phosichthyids over the oceanic and neritic area in the Southeastern Brazil.

scholarly journals Estimating Underwater Light Regime under Spatially Heterogeneous Sea Ice in the Arctic

2018 ◽  
Vol 8 (12) ◽  
pp. 2693 ◽  
Author(s):  
Philippe Massicotte ◽  
Guislain Bécu ◽  
Simon Lambert-Girard ◽  
Edouard Leymarie ◽  
Marcel Babin
Keyword(s):  
Sea Ice ◽  
Water Column ◽  
Attenuation Coefficient ◽  
Vertical Profile ◽  
Light Field ◽  
Incident Light ◽  
Single Point ◽  
The Arctic ◽  
Large Area ◽  
Average Irradiance

The vertical diffuse attenuation coefficient for downward plane irradiance ( K d ) is an apparent optical property commonly used in primary production models to propagate incident solar radiation in the water column. In open water, estimating K d is relatively straightforward when a vertical profile of measurements of downward irradiance, E d , is available. In the Arctic, the ice pack is characterized by a complex mosaic composed of sea ice with snow, ridges, melt ponds, and leads. Due to the resulting spatially heterogeneous light field in the top meters of the water column, it is difficult to measure at single-point locations meaningful K d values that allow predicting average irradiance at any depth. The main objective of this work is to propose a new method to estimate average irradiance over large spatially heterogeneous area as it would be seen by drifting phytoplankton. Using both in situ data and 3D Monte Carlo numerical simulations of radiative transfer, we show that (1) the large-area average vertical profile of downward irradiance, E d ¯ ( z ) , under heterogeneous sea ice cover can be represented by a single-term exponential function and (2) the vertical attenuation coefficient for upward radiance ( K L u ), which is up to two times less influenced by a heterogeneous incident light field than K d in the vicinity of a melt pond, can be used as a proxy to estimate E d ¯ ( z ) in the water column.

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