scholarly journals Vulnerabilities in coronavirus glycan shields despite extensive glycosylation

Author(s):  
Yasunori Watanabe ◽  
Zachary T. Berndsen ◽  
Jayna Raghwani ◽  
Gemma E. Seabright ◽  
Joel D. Allen ◽  
...  

AbstractSevere acute respiratory syndrome (SARS) and Middle East respiratory syndrome (MERS) coronaviruses (CoVs) are zoonotic pathogens with high fatality rates and pandemic potential. Vaccine development has focussed on the principal target of the neutralizing humoral immune response, the spike (S) glycoprotein, which mediates receptor recognition and membrane fusion. Coronavirus S proteins are extensively glycosylated viral fusion proteins, encoding around 69-87 N-linked glycosylation sites per trimeric spike. Using a multifaceted structural approach, we reveal a specific area of high glycan density on MERS S that results in the formation of under-processed oligomannose-type glycan clusters, which was absent on SARS and HKU1 CoVs. We provide a comparison of the global glycan density of coronavirus spikes with other viral proteins including HIV-1 envelope, Lassa virus glycoprotein complex, and influenza hemagglutinin, where glycosylation plays a known role in shielding immunogenic epitopes. Consistent with the ability of the antibody-mediated immune response to effectively target and neutralize coronaviruses, we demonstrate that the glycans of coronavirus spikes are not able to form an efficacious high-density global shield to thwart the humoral immune response. Overall, our data reveal how differential organisation of viral glycosylation across class I viral fusion proteins influence not only individual glycan compositions but also the immunological pressure across the viral protein surface.

2009 ◽  
Vol 83 (7) ◽  
pp. 3228-3237 ◽  
Author(s):  
François-Loic Cosset ◽  
Philippe Marianneau ◽  
Geraldine Verney ◽  
Fabrice Gallais ◽  
Noel Tordo ◽  
...  

ABSTRACT The cell entry and humoral immune response of the human pathogen Lassa virus (LV), a biosafety level 4 (BSL4) Old World arenavirus, are not well characterized. LV pseudoparticles (LVpp) are a surrogate model system that has been used to decipher factors and routes involved in LV cell entry under BSL2 conditions. Here, we describe LVpp, which are highly infectious, with titers approaching those obtained with pseudoparticles displaying G protein of vesicular stomatitis virus and their the use for the characterization of LV cell entry and neutralization. Upon cell attachment, LVpp utilize endocytic vesicles for cell entry as described for many pH-dependent viruses. However, the fusion of the LV glycoproteins is activated at unusually low pH values, with optimal fusion occurring between pH 4.5 and 3, a pH range at which fusion characteristics of viral glycoproteins have so far remained largely unexplored. Consistent with a shifted pH optimum for fusion activation, we found wild-type LV and LVpp to display a remarkable resistance to exposure to low pH. Finally, LVpp allow the fast and quantifiable detection of neutralizing antibodies in human and animal sera and will thus facilitate the study of the humoral immune response in LV infections.


2016 ◽  
Vol 66 (6) ◽  
pp. 645 ◽  
Author(s):  
Anshul Varshney ◽  
Nidhi Puranik ◽  
M. Kumar ◽  
A.K. Goel

Anthrax, caused by Bacillus anthracis is known to occur globally since antiquity. Besides being an important biothreat agent, it is an important public health importance pathogen also in countries like India. B. anthracis secretes three distinct toxins, namely protective antigen (PA), lethal factor (LF) and edema factor (EF). PA is the central moiety of the anthrax toxin complex and therefore has been a molecule of choice for vaccine development. PA has four different domains with different functions. In this study, the major domains of PA were cloned and expressed in bacterial system. The purified recombinant proteins were used to determine the humoral immune response by ELISA using 43 human cutaneous anthrax serum samples. The maximum immunoreactivity was observed with the whole PA protein followed by domain 2, 4 and 1. The study corroborated that in addition to full PA, individual domain 2 and 4 can also be good target for vaccine development as well as for serodiagnostic assays for cutaneous anthrax


2002 ◽  
Vol 70 (8) ◽  
pp. 4158-4164 ◽  
Author(s):  
Nicole Reiche ◽  
Andreas Jung ◽  
Thomas Brabletz ◽  
Tanja Vater ◽  
Thomas Kirchner ◽  
...  

ABSTRACT Infection with Helicobacter pylori is chronic despite a vigorous cellular and humoral immune response and causes severe pathology in some patients. In this study, phage display was used as a new approach in order to investigate the role of the host's humoral immune response in the pathogenesis of H. pylori gastritis. Human monoclonal single-chain Fv (scFv) antibody fragments against H. pylori cell lysate and the H. pylori urease were isolated from an immune phage display library, constructed from peripheral blood lymphocytes of an H. pylori-infected patient. After affinity selection, 23% of the clones tested showed binding activity against a lysate of the H. pylori Sydney strain in enzyme-linked immunosorbent assay (ELISA) and 9% bound the H. pylori urease. Further characterization by PCR-fingerprint analysis and sequencing revealed that two closely related H. pylori binders and one antiurease scFv could be isolated. The selected scFvs were highly specific as analyzed by ELISA and immunoblots using various bacterial lysates and recombinant proteins. Analysis of the humoral immune response following H. pylori infection using human monoclonal antibodies might contribute to a better understanding of the pathogenesis of the disease. Moreover, using immune phage display libraries, it might be possible for relevant epitopes of H. pylori antigens to be determined, which might be of use for vaccine development.


Author(s):  
Jiaxin Zheng ◽  
Yingying Deng ◽  
Zhenyu Zhao ◽  
Binli Mao ◽  
Mengji Lu ◽  
...  

AbstractCoronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is an ongoing pandemic that poses a great threat to human health worldwide. As the humoral immune response plays essential roles in disease occurrence and development, understanding the dynamics and characteristics of virus-specific humoral immunity in SARS-CoV-2-infected patients is of great importance for controlling this disease. In this review, we summarize the characteristics of the humoral immune response after SARS-CoV-2 infection and further emphasize the potential applications and therapeutic prospects of SARS-CoV-2-specific humoral immunity and the critical role of this immunity in vaccine development. Notably, serological antibody testing based on the humoral immune response can guide public health measures and control strategies; however, it is not recommended for population surveys in areas with very low prevalence. Existing evidence suggests that asymptomatic individuals have a weaker immune response to SARS-CoV-2 infection, whereas SARS-CoV-2-infected children have a more effective humoral immune response than adults. The correlations between antibody (especially neutralizing antibody) titers and protection against SARS-CoV-2 reinfection should be further examined. In addition, the emergence of cross-reactions among different coronavirus antigens in the development of screening technology and the risk of antibody-dependent enhancement related to SARS-CoV-2 vaccination should be given further attention.


Author(s):  
Priyamvada Acharya ◽  
Wilton Williams ◽  
Rory Henderson ◽  
Katarzyna Janowska ◽  
Kartik Manne ◽  
...  

SummaryThe COVID-19 pandemic caused by SARS-CoV-2 has escalated into a global crisis. The spike (S) protein that mediates cell entry and membrane fusion is the current focus of vaccine and therapeutic antibody development efforts. The S protein, like many other viral fusion proteins such as HIV-1 envelope (Env) and influenza hemagglutinin, is glycosylated with both complex and high mannose glycans. Here we demonstrate binding to the SARS-CoV-2 S protein by a category of Fab-dimerized glycan-reactive (FDG) HIV-1-induced broadly neutralizing antibodies (bnAbs). A 3.1 Å resolution cryo-EM structure of the S protein ectodomain bound to glycan-dependent HIV-1 bnAb 2G12 revealed a quaternary glycan epitope on the spike S2 domain involving multiple protomers. These data reveal a new epitope on the SARS-CoV-2 spike that can be targeted for vaccine design.HighlightsFab-dimerized, glycan-reactive (FDG) HIV-1 bnAbs cross-react with SARS-CoV-2 spike.3.1 Å resolution cryo-EM structure reveals quaternary S2 epitope for HIV-1 bnAb 2G12.2G12 targets glycans, at positions 709, 717 and 801, in the SARS-CoV-2 spike.Our studies suggest a common epitope for FDG antibodies centered around glycan 709.


2021 ◽  
Vol 8 ◽  
Author(s):  
Brittany A. Comunale ◽  
Lilly Engineer ◽  
Yong Jiang ◽  
John C. Andrews ◽  
Qianna Liu ◽  
...  

Background: Millions have been exposed to SARS-CoV-2, but the severity of resultant infections has varied among adults and children, with adults presenting more serious symptomatic cases. Children may possess an immunity that adults lack, possibly from childhood vaccinations. This retrospective study suggests immunization against the poliovirus may provide an immunity to SARS-CoV-2.Methods: Publicly available data were analyzed for possible correlations between national median ages and epidemiological outbreak patterns across 100 countries. Sera from 204 adults and children, who were immunized with the poliovirus vaccine, were analyzed using an enzyme-linked immunosorbent assay. The effects of polio-immune serum on SARS-CoV-2-induced cytopathology in cell culture were then evaluated.Results: Analyses of median population age demonstrated a positive correlation between median age and SARS-CoV-2 prevalence and death rates. Countries with effective poliovirus immunization protocols and younger populations have fewer and less pathogenic cases of COVID-19. Antibodies to poliovirus and SARS-CoV-2 were found in pediatric sera and in sera from adults recently immunized with polio. Sera from polio-immunized individuals inhibited SARS-CoV-2 infection of Vero cell cultures. These results suggest the anti-D3-pol-antibody, induced by poliovirus vaccination, may provide a similar degree of protection from SARS-CoV-2 to adults as to children.Conclusions: Poliovirus vaccination induces an adaptive humoral immune response. Antibodies created by poliovirus vaccination bind the RNA-dependent RNA polymerase (RdRp) protein of both poliovirus and SARS-CoV-2, thereby preventing SARS-CoV-2 infection. These findings suggest proteins other than “spike” proteins may be suitable targets for immunity and vaccine development.


Blood ◽  
2015 ◽  
Vol 126 (23) ◽  
pp. 2748-2748
Author(s):  
Wei Chan ◽  
Thomas Theriault ◽  
Ronald Levy ◽  
James Swartz

Abstract Background For decades since its discovery, the idiotype protein (Id) expressed on the surface of B-cell malignancies has been pursued as a tumor-specific target in therapeutic antibody and vaccine development programs. The challenge in vaccine development has been to present the Id antigen so as to stimulate an effective anti-tumor response. Advances in our understanding of the immune system have revealed the importance of innate receptors, particularly the toll-like receptor (TLR) family, in stimulating adaptive immunity. Further understanding of virus-induced immunity reveals features such as viral trafficking to lymph nodes and presentation of antigens in an ordered array that facilitate immune response generation. Our strategy combines this knowledge with advanced protein engineering in order to produce a stabilized virus-like particle (sVLP) that displays Id in the context of innate immune stimulants. Multiple studies using the 38C13 lymphoma model were performed to evaluate and maximize the efficacy of Id-VLP vaccines using the historical "gold standard" Id-KLH as a reference. Methods VLP vaccines were constructed by conjugating the tumor-associated Id antigen and immune stimulants, GM-CSF, CpG DNA, and flagellin, to the exterior surface of either the MS2 or Hepatitis B core (HBc) VLP. The bioconjugates were engineered to maintain biologic activity of the immune stimulants and present unperturbed heavy and light chain variable regions. A total of 14 different vaccines displaying 3 different 38C13 Id formats, IgM, F(ab')2 and scFv, with or without one or more of the three immune stimulant were produced. For example, with the scFv Id format VLP vaccines, 7 of the 8 possible combinations of immune stimulants were made. Three in vivo experiments were performed to evaluate vaccine compositions. C3H mice were vaccinated three times within a one-month period with control or experimental vaccines. Following vaccination, the mice were challenged with 38C13 Id-bearing tumor cells administered by intraperitoneal or subcutaneous routes. Sera samples were collected prior to, during, and after vaccination for analysis of total and isotype-specific anti-Id antibody titer. Results The first study compared MS2- and HBc-based VLP vaccines. While both viral structures exhibited immune inhibition on their own, the HBc VLP vaccine conjugated with GM-CSF and CpG elicited a strong and protective humoral immune response as compared to experimental controls. This was confirmed in a second study where different HBc VLP vaccines explored additional combinations of immune stimulants and the different Id formats. While all HBc VLP vaccines elicited strong and protective immune responses, the VLP with scFv Id format and CpG provided better protection against tumor challenge than the Id-KLH conjugate. (70% vs 30% event-free survival). The third study further examined the scFv Id format and immune stimulants on stabilized HBc-based vaccines where disulfide bonds were introduced between dimers within the axes of symmetry to create a VLP structure in which every atom is indirectly covalently bonded to every other atom. Once again, the scFv Id-CpG-sVLP vaccine elicited a strong and protective response. Conclusions Collectively, these studies provide strong rationale for the selected BB-001 composition (scFv Id-CpG-HBc sVLP) as a vaccine for Id-bearing lymphomas, as well as solid evidence that HBc sVLPs are a versatile and effective platform for further vaccine development. While all HBc-based Id vaccines with immune stimulants were statistically significantly superior to placebo groups in terms of efficacy and/or immune response, the simpler VLP vaccine with the TLR9 agonist CpG outperformed the combinations with GM-CSF and/or flagellin. The subcutaneous tumor challenge was more demanding, and showed a statistically significant survival advantage for BB-001(70%) versus Id-KLH (30%). Consistent with previous 38C13 studies, humoral immune response was critical for protection from challenge. Evidence of antibody class switching in the humoral immune response was also observed. Disclosures Theriault: Bullet Biotechnology, Inc.: Employment, Equity Ownership. Levy:Bullet Biotechnology, Inc.: Consultancy. Swartz:Bullet Biotechnology, Inc.: Consultancy, Equity Ownership, Membership on an entity's Board of Directors or advisory committees.


2021 ◽  
Author(s):  
Brittany A. Comunale ◽  
Lilly Engineer ◽  
Yong Jiang ◽  
John C. Andrews ◽  
Qianna Liu ◽  
...  

Background: Millions have been exposed to SARS-CoV-2, but the severity of resultant infections has varied among adults and children, with adults presenting more serious symptomatic cases. Children may possess an immunity that adults lack, possibly from childhood vaccinations. This retrospective study suggests immunization against the poliovirus may provide an immunity to SARS-CoV-2. Methods: Publicly available data were analyzed for possible correlations between national median ages and epidemiological outbreak patterns across 100 countries. Sera from 204 adults and children, who were immunized with the poliovirus vaccine, were analyzed using an enzyme-linked immunosorbent assay. The effects of polio-immune serum on SARS-CoV-2-induced cytopathology in cell culture were then evaluated. Results: Analyses of median population age demonstrated a positive correlation between median age and SARS-CoV-2 prevalence and death rates. Countries with effective poliovirus immunization protocols and younger populations have fewer and less pathogenic cases of COVID-19. Antibodies to poliovirus and SARS-CoV-2 were found in pediatric sera and in sera from adults recently immunized with polio. Western blot demonstrated antibodies recognized the RNA-dependent-RNA-polymerase (RdRp) of either virus. Sera from polio-immunized individuals inhibited SARS-CoV-2 infection of Vero cell cultures. These results suggest the anti-D3-pol-antibody, induced by poliovirus vaccination, may provide a similar degree of protection from SARS-CoV-2 to adults as to children. Conclusions: Poliovirus vaccination induces an adaptive humoral immune response. Antibodies created by poliovirus vaccination bind the RdRp protein of both poliovirus and SARS-CoV-2, thereby preventing SARS-CoV-2 infection. These findings suggest proteins other than spike proteins may be suitable targets for immunity and vaccine development.


2021 ◽  
Author(s):  
Zongmei Wang ◽  
Yueming Yuan ◽  
Chen Chen ◽  
Chengguang Zhang ◽  
Fei Huang ◽  
...  

Rabies, caused by rabies virus (RABV), remains a serious threat to public health in most countries worldwide. At present, the administration of rabies vaccines has been the most effective strategy to control rabies. Herein, we evaluate the effect of colloidal manganese salt (Mn jelly, MnJ) as an adjuvant of rabies vaccine in mice, cats, and dogs. The results showed that MnJ promoted type I interferon (IFN-I) and cytokine production in vitro and the maturation of dendritic cells (DCs) in vitro and in vivo . Besides, MnJ serving as an adjuvant for rabies vaccines could significantly facilitate the generation of T follicular helper (Tfh) cells, germinal center (GC) B cells, plasma cells (PCs), and RABV-specific antibody-secreting-cells (ASCs), consequently improved the immunogenicity of rabies vaccines and provide better protection against virulent RABV challenge. Similarly, MnJ enhanced the humoral immune response in cats and dogs as well. Collectively, our results suggest that MnJ can facilitate the maturation of DCs during rabies vaccination, which can be a promising adjuvant candidate for rabies vaccines. IMPORTANCE Extending humoral immune response by using adjuvants is an important strategy for vaccine development. In this study, a novel adjuvant MnJ supplemented in rabies vaccines was evaluated in mice, cats, and dogs. Our results in the mouse model revealed that MnJ increased the numbers of mature DCs, Tfh cells, GC B cells, PCs, and RABV-specific ASCs, resulting in enhanced immunogenicity and protection rate of rabies vaccines. We further found MnJ had the same stimulative effect in cats and dogs. Our study provides the first evidence that MnJ serving as a novel adjuvant of rabies vaccines can boost immune response both in a mouse and pet model.


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