scholarly journals Miniaturized head-mounted device for whole cortex mesoscale imaging in freely behaving mice

2020 ◽  
Author(s):  
Mathew L Rynes ◽  
Daniel Surinach ◽  
Samantha Linn ◽  
Michael Laroque ◽  
Vijay Rajendran ◽  
...  
Keyword(s):  
Neural Activity ◽  
Glutamate Release ◽  
Wide Field ◽  
Dorsal Cortex ◽  
Perceptual Decision Making ◽  
Calcium Activity ◽  
Calcium Indicators ◽  
Stroboscopic Illumination ◽  
Freely Behaving ◽  
Sensory Evoked

ABSTRACTThe advent of genetically encoded calcium indicators, along with surgical preparations such as thinned skulls or refractive index matched skulls, have enabled mesoscale cortical activity imaging in head-fixed mice. Such imaging studies have revealed complex patterns of coordinated activity across the cortex during spontaneous behaviors, goal-directed behavior, locomotion, motor learning, and perceptual decision making. However, neural activity during unrestrained behavior significantly differs from neural activity in head-fixed animals. Whole-cortex imaging in freely behaving mice will enable the study of neural activity in a larger, more complex repertoire of behaviors not possible in head-fixed animals. Here we present the “Mesoscope,” a wide-field miniaturized, head-mounted fluorescence microscope compatible with transparent polymer skulls recently developed by our group. With a field of view of 8 mm x 10 mm and weighing less than 4 g, the Mesoscope can image most of the mouse dorsal cortex with resolution ranging from 39 to 56 µm. Stroboscopic illumination with blue and green LEDs allows for the measurement of both fluorescence changes due to calcium activity and reflectance signals to capture hemodynamic changes. We have used the Mesoscope to successfully record mesoscale calcium activity across the dorsal cortex during sensory-evoked stimuli, open field behaviors, and social interactions. Finally, combining the mesoscale imaging with electrophysiology enabled us to measure dynamics in extracellular glutamate release in the cortex during the transition from wakefulness to natural sleep.

scholarly journals Decoding of cortex-wide brain activity from local recordings of neural potentials

2021 ◽  
Author(s):  
Xin Liu ◽  
Chi Ren ◽  
Zhisheng Huang ◽  
Madison Wilson ◽  
Jeong-Hoon Kim ◽  
...  
Keyword(s):  
Neural Activity ◽  
Large Scale ◽  
Neural Circuit ◽  
Brain Activity ◽  
Wide Field ◽  
Dorsal Cortex ◽  
Surface Potentials ◽  
Brain Surface ◽  
Neural Activities ◽  
Cortical Regions

Objective. Electrical recordings of neural activity from brain surface have been widely employed in basic neuroscience research and clinical practice for investigations of neural circuit functions, brain-computer interfaces, and treatments for neurological disorders. Traditionally, these surface potentials have been believed to mainly reflect local neural activity. It is not known how informative the locally recorded surface potentials are for the neural activities across multiple cortical regions. Approach. To investigate that, we perform simultaneous local electrical recording and wide-field calcium imaging in awake head-fixed mice. Using a recurrent neural network model, we try to decode the calcium fluorescence activity of multiple cortical regions from local electrical recordings. Main results. The mean activity of different cortical regions could be decoded from locally recorded surface potentials. Also, each frequency band of surface potentials differentially encodes activities from multiple cortical regions so that including all the frequency bands in the decoding model gives the highest decoding performance. Despite the close spacing between recording channels, surface potentials from different channels provide complementary information about the large-scale cortical activity and the decoding performance continues to improve as more channels are included. Finally, we demonstrate the successful decoding of whole dorsal cortex activity at pixel-level using locally recorded surface potentials. Significance. These results show that the locally recorded surface potentials indeed contain rich information of the large-scale neural activities, which could be further demixed to recover the neural activity across individual cortical regions. In the future, our cross-modality inference approach could be adapted to virtually reconstruct cortex-wide brain activity, greatly expanding the spatial reach of surface electrical recordings without increasing invasiveness. Furthermore, it could be used to facilitate imaging neural activity across the whole cortex in freely moving animals, without requirement of head-fixed microscopy configurations.

scholarly journals Can binocular rivalry reveal neural correlates of consciousness?

2014 ◽  
Vol 369 (1641) ◽  
pp. 20130211 ◽  
Author(s):  
Randolph Blake ◽  
Jan Brascamp ◽  
David J. Heeger
Keyword(s):  
Decision Making ◽  
Binocular Rivalry ◽  
Neural Activity ◽  
Neural Correlates ◽  
Causal Link ◽  
Neural Dynamics ◽  
Perceptual Decision Making ◽  
Neural Correlate ◽  
Neural Correlates Of Consciousness ◽  
Neural Correlate Of Consciousness

This essay critically examines the extent to which binocular rivalry can provide important clues about the neural correlates of conscious visual perception. Our ideas are presented within the framework of four questions about the use of rivalry for this purpose: (i) what constitutes an adequate comparison condition for gauging rivalry's impact on awareness, (ii) how can one distinguish abolished awareness from inattention, (iii) when one obtains unequivocal evidence for a causal link between a fluctuating measure of neural activity and fluctuating perceptual states during rivalry, will it generalize to other stimulus conditions and perceptual phenomena and (iv) does such evidence necessarily indicate that this neural activity constitutes a neural correlate of consciousness? While arriving at sceptical answers to these four questions, the essay nonetheless offers some ideas about how a more nuanced utilization of binocular rivalry may still provide fundamental insights about neural dynamics, and glimpses of at least some of the ingredients comprising neural correlates of consciousness, including those involved in perceptual decision-making.

scholarly journals Transient neuronal suppression for exploitation of new sensory evidence

2022 ◽  
Vol 13 (1) ◽  
Author(s):  
Maxwell Shinn ◽  
Daeyeol Lee ◽  
John D. Murray ◽  
Hyojung Seo
Keyword(s):  
Decision Making ◽  
Neural Activity ◽  
Temporal Integration ◽  
Motor Preparation ◽  
Stimulus Onset ◽  
Frontal Eye Field ◽  
Perceptual Decision Making ◽  
Behavioral Studies ◽  
The Face ◽  
Sensory Evidence

AbstractIn noisy but stationary environments, decisions should be based on the temporal integration of sequentially sampled evidence. This strategy has been supported by many behavioral studies and is qualitatively consistent with neural activity in multiple brain areas. By contrast, decision-making in the face of non-stationary sensory evidence remains poorly understood. Here, we trained monkeys to identify and respond via saccade to the dominant color of a dynamically refreshed bicolor patch that becomes informative after a variable delay. Animals’ behavioral responses were briefly suppressed after evidence changes, and many neurons in the frontal eye field displayed a corresponding dip in activity at this time, similar to that frequently observed after stimulus onset but sensitive to stimulus strength. Generalized drift-diffusion models revealed consistency of behavior and neural activity with brief suppression of motor output, but not with pausing or resetting of evidence accumulation. These results suggest that momentary arrest of motor preparation is important for dynamic perceptual decision making.

scholarly journals Multiple states in ongoing neural activity in the rat visual cortex

PLoS ONE ◽  
2021 ◽  
Vol 16 (8) ◽  
pp. e0256791
Author(s):  
Daichi Konno ◽  
Shinji Nishimoto ◽  
Takafumi Suzuki ◽  
Yuji Ikegaya ◽  
Nobuyoshi Matsumoto
Keyword(s):  
Visual Cortex ◽  
Neural Activity ◽  
Activity Patterns ◽  
Electrode Array ◽  
Nonlinear Dimensionality Reduction ◽  
Neural Responses ◽  
Spontaneous Neural Activity ◽  
Custom Made ◽  
Visual Cortices ◽  
Freely Behaving

The brain continuously produces internal activity in the absence of afferently salient sensory input. Spontaneous neural activity is intrinsically defined by circuit structures and associated with the mode of information processing and behavioral responses. However, the spatiotemporal dynamics of spontaneous activity in the visual cortices of behaving animals remain almost elusive. Using a custom-made electrode array, we recorded 32-site electrocorticograms in the primary and secondary visual cortex of freely behaving rats and determined the propagation patterns of spontaneous neural activity. Nonlinear dimensionality reduction and unsupervised clustering revealed multiple discrete states of the activity patterns. The activity remained stable in one state and suddenly jumped to another state. The diversity and dynamics of the internally switching cortical states would imply flexibility of neural responses to various external inputs.

scholarly journals Population-wide distributions of neural activity during perceptual decision-making

2013 ◽  
Vol 103 ◽  
pp. 156-193 ◽  
Author(s):  
Adrien Wohrer ◽  
Mark D. Humphries ◽  
Christian K. Machens
Keyword(s):  
Decision Making ◽  
Neural Activity ◽  
Perceptual Decision Making ◽  
Perceptual Decision

scholarly journals Rapid changes in glutamate levels in the posterior hypothalamus across sleep-wake states in freely behaving rats

2008 ◽  
Vol 295 (6) ◽  
pp. R2041-R2049 ◽  
Author(s):  
Joshi John ◽  
Lalini Ramanathan ◽  
Jerome M. Siegel
Keyword(s):  
Eye Movement ◽  
Rem Sleep ◽  
Glutamate Release ◽  
Sleep Onset ◽  
Nrem Sleep ◽  
Progressive Increase ◽  
High Temporal Resolution ◽  
Hypothalamic Region ◽  
Rapid Changes ◽  
Freely Behaving

The histamine-containing posterior hypothalamic region (PH-TMN) plays a key role in sleep-wake regulation. We investigated rapid changes in glutamate release in the PH-TMN across the sleep-wake cycle with a glutamate biosensor that allows the measurement of glutamate levels at 1- to 4-s resolution. In the PH-TMN, glutamate levels increased in active waking (AW) and rapid eye movement (REM) sleep compared with quiet waking and nonrapid eye movement (NREM) sleep. There was a rapid (0.6 ± 1.8 s) and progressive increase in glutamate levels at REM sleep onset. A reduction in glutamate levels consistently preceded the offset of REM sleep by 8 ± 3 s. Short-duration sleep deprivation resulted in a progressive increase in glutamate levels in the PH-TMN, perifornical-lateral hypothalamus (PF-LH), and cortex. We found that in the PF-LH, glutamate levels took a longer time to return to basal values compared with the time it took for glutamate levels to increase to peak values during AW onset. This is in contrast to other regions we studied in which the return to baseline values after AW was quicker than their rise with waking onset. In summary, we demonstrated an increase in glutamate levels in the PH-TMN with REM/AW onset and a drop in glutamate levels before the offset of REM. High temporal resolution measurement of glutamate levels reveals dynamic changes in release linked to the initiation and termination of REM sleep.

scholarly journals Decoding locomotion from population neural activity in moving C. elegans

eLife ◽  
2021 ◽  
Vol 10 ◽  
Author(s):  
Kelsey M Hallinen ◽  
Ross Dempsey ◽  
Monika Scholz ◽  
Xinwei Yu ◽  
Ashley Linder ◽  
...  
Keyword(s):  
Population Dynamics ◽  
Neural Activity ◽  
Single Neuron ◽  
Neural Representation ◽  
Correlation Structure ◽  
Experimental Measurements ◽  
Population Activity ◽  
Calcium Activity ◽  
C Elegans

We investigated the neural representation of locomotion in the nematode C. elegans by recording population calcium activity during movement. We report that population activity more accurately decodes locomotion than any single neuron. Relevant signals are distributed across neurons with diverse tunings to locomotion. Two largely distinct subpopulations are informative for decoding velocity and curvature, and different neurons’ activities contribute features relevant for different aspects of a behavior or different instances of a behavioral motif. To validate our measurements, we labeled neurons AVAL and AVAR and found that their activity exhibited expected transients during backward locomotion. Finally, we compared population activity during movement and immobilization. Immobilization alters the correlation structure of neural activity and its dynamics. Some neurons positively correlated with AVA during movement become negatively correlated during immobilization and vice versa. This work provides needed experimental measurements that inform and constrain ongoing efforts to understand population dynamics underlying locomotion in C. elegans.

scholarly journals Slow drift of neural activity as a signature of impulsivity in macaque visual and prefrontal cortex

2020 ◽  
Author(s):  
Benjamin R. Cowley ◽  
Adam C. Snyder ◽  
Katerina Acar ◽  
Ryan C. Williamson ◽  
Byron M. Yu ◽  
...  
Keyword(s):  
Decision Making ◽  
Prefrontal Cortex ◽  
Neural Activity ◽  
Internal State ◽  
Sensory Stimulus ◽  
Perceptual Decision Making ◽  
Population Activity ◽  
Perceptual Decision ◽  
Slow Drift ◽  
Sensory Evidence

AbstractAn animal’s decision depends not only on incoming sensory evidence but also on its fluctuating internal state. This internal state is a product of cognitive factors, such as fatigue, motivation, and arousal, but it is unclear how these factors influence the neural processes that encode the sensory stimulus and form a decision. We discovered that, over the timescale of tens of minutes during a perceptual decision-making task, animals slowly shifted their likelihood of reporting stimulus changes. They did this unprompted by task conditions. We recorded neural population activity from visual area V4 as well as prefrontal cortex, and found that the activity of both areas slowly drifted together with the behavioral fluctuations. We reasoned that such slow fluctuations in behavior could either be due to slow changes in how the sensory stimulus is processed or due to a process that acts independently of sensory processing. By analyzing the recorded activity in conjunction with models of perceptual decision-making, we found evidence for the slow drift in neural activity acting as an impulsivity signal, overriding sensory evidence to dictate the final decision. Overall, this work uncovers an internal state embedded in the population activity across multiple brain areas, hidden from typical trial-averaged analyses and revealed only when considering the passage of time within each experimental session. Knowledge of this cognitive factor was critical in elucidating how sensory signals and the internal state together contribute to the decision-making process.

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