scholarly journals Growth and division mode plasticity by cell density in marine-derived black yeasts

2021 ◽  
Author(s):  
Gohta Goshima
Keyword(s):  
Cell Division ◽  
Cell Density ◽  
Marine Fungi ◽  
Yeast Species ◽  
Budding Yeast ◽  
Black Yeast ◽  
Black Yeasts ◽  
Intermediate Cell ◽  
The Pacific ◽  
Random Site

The diversity and ecological contribution of the fungus kingdom in the marine environment remain under-studied. A recent survey in the Atlantic (Woods Hole, MA, USA) brought to light the diversity and unique biological features of marine fungi. The study revealed that black yeast species undergo an unconventional cell division cycle, which has not been documented in conventional model yeast species such as Saccharomyces cerevisiae (budding yeast) and Schizosaccharomyces pombe (fission yeast). The prevalence of this unusual property is unknown. Inspired by the findings in Woods Hole, I collected and identified >50 marine fungi species across 40 genera from the ocean surface, sediment, and macroalgal surface in the Pacific (Sugashima, Toba, Japan). The Sugashima collection largely did not overlap with the Woods Hole collection and included several unidentifiable species, further illustrating the diversity of marine fungi. Three black yeast species were isolated, two of which were commonly found in Woods Hole (Aureobasidium pullulans, Hortaea werneckii). Surprisingly, I observed that their cell division mode was dependent on cell density, and the previously reported unconventional division mode was reproduced only at a certain cell density. For all three black yeast species, cells underwent filamentous growth with septations at low cell density and immediately formed buds at high cell density. At intermediate cell density, two black yeasts showed rod cells undergoing septation at the cell equator, in a manner similar to S. pombe. In contrast, all eight budding yeast species showed a consistent division pattern regardless of cell density. In five budding yeast species, the mother cell formed a single bud at a time at an apparently random site, similar to S. cerevisiae. The other three budding yeast species possessed a fixed budding site. This study illustrates the plastic nature of the growth/division mode of marine-derived black yeast.

Thermoresistance in black yeasts is associated with halosensitivity and HPP tolerance, but not with UV tolerance or sanitizer tolerance

2021 ◽  
Author(s):  
Shiyu Cai ◽  
Abigail Snyder
Keyword(s):  
Food Production ◽  
Uv Light ◽  
High Pressure Processing ◽  
Black Yeast ◽  
Black Yeasts ◽  
Strain Variation ◽  
Yeast Strains ◽  
Uv Tolerance ◽  
Relative Stress ◽  
Different Strains

Black yeasts can survive extreme conditions in food production owing to their polyextremotolerant character. However, significant strain-to-strain variation in black yeast thermoresistance has been observed. In this study, we assessed the variability in tolerance to nonthermal interventions among a collection of food-related black yeast strains. Variation in tolerance to UV light treatment, high pressure processing, sanitizers, and osmotic pressure was observed within each species. The two strains previously shown to possess high thermotolerance, Exophiala phaeomuriformis FSL-E2-0572 and Exophiala dermatitidis YB-734, were also the most HPP tolerant, but were the least halotolerant. Meanwhile, Aureobasidium pullulans FSL-E2-0290 was the most UV and sanitizer tolerant, but had been shown to have relatively low thermoresistance. Fisher’s exact tests showed that thermoresistance in black yeasts was associated with HPP tolerance and inversely with halotolerance, but no association was found with UV tolerance or sanitizer tolerance. Collectively, the relative stress tolerance among strains varied across interventions. Given this variation, a broad range of different food products are susceptible to black yeast spoilage. Additionally, different strains should be selected in challenge studies specific to the intervention. (1312/2000 characters)

Intermediate thermoresistance in black yeast asexual cells variably increases with culture age, promoting survival and spoilage in thermally processed shelf-stable foods

2021 ◽  
Author(s):  
Shiyu Cai ◽  
Emilia Rico-Munoz ◽  
Abigail Snyder
Keyword(s):  
Black Yeast ◽  
Black Yeasts ◽  
Maple Syrup ◽  
Apple Cider ◽  
Culture Age ◽  
Heat Resistant ◽  
Challenge Study ◽  
Food Spoilage Fungi ◽  
Intermediate Degree ◽  
Spoilage Fungi

Black yeasts are a functional group that has caused spoilage in cold-filled and hot-filled beverages as well as other water activity (a w )-controlled food products. We established quantitative thermoresistance parameters for the inactivation of 12 Aureobasidium and Exophiala isolates through isothermal experiments and a challenge study. Culture age (2-day vs. 28-day) variably affected the thermoresisitance among the black yeast strains. Variation in thermoresistance exists within each genus, but the two most resistant strains were the Exophiala isolates. The two most heat resistant isolates were E. phaeomuriformis FSL-E2-0572 with a D 60 -value of 7.69±0.63 min in 28-day culture and E. dermatitidis YB-734 with a D 60 -value of 16.32±2.13 min in 28-day culture. While these thermoresistance levels were, in some cases, greater than those for conidia and vegetative cells from other common food spoilage fungi, they were much more sensitive than the ascospores of heat resistant molds most associated with spoilage of hot-filled products. However, given that black yeasts have caused spoilage in hot-filled products, we hypothesized that this intermediate degree of thermoresistance may support survival following introduction during active cooling before package seals have formed. A challenge study was performed in an acidic (apple cider) and a w -controlled (maple syrup) product to evaluate survival. When apple cider was hot-filled at 82C, black yeast counts were reduced by 4.1-log CFU/ml 24 h after the heat treatment, but the survivors increased up to 6.7-log CFU/ml after two weeks. In comparison, the counts were below the detection limit after both 24 h and 14 days of shelf-life in both products when filled at their boiling points. This suggests that ensuring water microbial quality in cooling tunnels and nozzle sanitation may be essential in mitigating the introduction of these fungi.

scholarly journals Development of an Improved Carotenoid Extraction Method to Characterize the Carotenoid Composition under Oxidative Stress and Cold Temperature in the Rock Inhabiting Fungus Knufia petricola A95

2018 ◽  
Vol 4 (4) ◽  
pp. 124 ◽  
Author(s):  
Kerstin Flieger ◽  
Nicole Knabe ◽  
Jörg Toepel
Keyword(s):  
Oxidative Stress ◽  
Stress Responses ◽  
Stress Factors ◽  
Black Yeast ◽  
Black Yeasts ◽  
Protective Agent ◽  
Extraction And Separation ◽  
Carotenoid Composition ◽  
Other Substances ◽  
Promising Source

Black yeasts are a highly specified group of fungi, which are characterized by a high resistance against stress factors. There are several factors enabling the cells to survive harsh environmental conditions. One aspect is the pigmentation, the melanin black yeasts often display a highly diverse carotenoid spectrum. Determination and characterization of carotenoids depend on an efficient extraction and separation, especially for black yeast, which is characterized by thick cell walls. Therefore, specific protocols are needed to ensure reliable analyses regarding stress responses in these fungi. Here we present both. First, we present a method to extract and analyze carotenoids and secondly we present the unusual carotenoid composition of the black yeast Knufia petricola A95. Mechanical treatment combined with an acetonitrile extraction gave us very good extraction rates with a high reproducibility. The presented extraction and elution protocol separates the main carotenoids (7) in K. petricola A95 and can be extended for the detection of additional carotenoids in other species. K. petricola A95 displays an unusual carotenoid composition, with mainly didehydrolycopene, torulene, and lycopene. The pigment composition varied in dependency to oxidative stress but remained relatively constant if the cells were cultivated under low temperature. Future experiments have to be carried out to determine if didehydrolycopene functions as a protective agent itself or if it serves as a precursor for antioxidative pigments like torulene and torularhodin, which could be produced after induction under stress conditions. Black yeasts are a promising source for carotenoid production and other substances. To unravel the potential of these fungi, new methods and studies are needed. The established protocol allows the determination of carotenoid composition in black yeasts.

scholarly journals Pushing for answers: is myosin V directly involved in moving mitochondria?

2008 ◽  
Vol 181 (1) ◽  
pp. 15-18 ◽  
Author(s):  
Rajeshwari R. Valiathan ◽  
Lois S. Weisman
Keyword(s):  
Cell Division ◽  
Light Chain ◽  
Budding Yeast ◽  
Myosin V ◽  
Class V ◽  
Mitochondrial Transport ◽  
Direct Involvement ◽  
Cell Biol ◽  
Myosin Motors

In budding yeast, the actin-based class V myosin motors, Myo2 and Myo4, transport virtually all organelles from mother to bud during cell division. Until recently, it appeared that mitochondria may be an exception, with studies showing that the Arp2/3 complex is required for their movement. However, several recent studies have proposed that Myo2 has a direct involvement in mitochondria inheritance. In this issue, Altmann et al. (Altmann, K., M. Frank, D. Neumann, S. Jakobs, and B. Westermann. 2008. J. Cell Biol. 181:119–130) provide the strongest support yet that Myo2 and its associated light chain Mlc1 function directly and significantly in both mitochondria–actin interactions and in the movement of mitochondria from mother to bud. The conflicting functions of Arp 2/3 and Myo2 may be reconciled by the existence of multiple pathways involved in mitochondrial transport.

scholarly journals Investigating molecular crowding during cell division and hyperosmotic stress in budding yeast with FRET

2021 ◽  
pp. 75-118
Author(s):  
Sarah Lecinski ◽  
Jack W. Shepherd ◽  
Lewis Frame ◽  
Imogen Hayton ◽  
Chris MacDonald ◽  
...  
Keyword(s):  
Cell Division ◽  
Budding Yeast ◽  
Hyperosmotic Stress ◽  
Molecular Crowding

Reduction of the rate of outgrowth, cell density, and cell division following removal of the apical ectodermal ridge of the chick limb-bud

Development ◽  
1977 ◽  
Vol 40 (1) ◽  
pp. 1-21
Author(s):  
Dennis Summerbell
Keyword(s):  
Cell Proliferation ◽  
Cell Death ◽  
Cell Division ◽  
Cell Density ◽  
Apical Ectodermal Ridge ◽  
Limb Bud ◽  
Short Term ◽  
Density Dependent ◽  
Wing Bud

Removal of the apical ectodermal ridge causes a reduction in the rate of outgrowth of the wing-bud and the loss of distal parts. More specifically it causes a short-term increase in cell density and cell death and a decrease in the rate of cell proliferation. The evidence supports the hypothesis of density-dependent control of cell division and suggests that there may also be a mechanism regulating skeletal length at the time of differentiation. An informal model is presented to explain the observations.

scholarly journals Abundances of transcripts, proteins, and metabolites in the cell cycle of budding yeast reveal coordinate control of lipid metabolism

2020 ◽  
Vol 31 (10) ◽  
pp. 1069-1084 ◽  
Author(s):  
Heidi M. Blank ◽  
Ophelia Papoulas ◽  
Nairita Maitra ◽  
Riddhiman Garge ◽  
Brian K. Kennedy ◽  
...  
Keyword(s):  
Cell Cycle ◽  
Lipid Metabolism ◽  
Cell Division ◽  
Yeast Cell ◽  
Budding Yeast ◽  
Yeast Cells ◽  
Dynamic Changes ◽  
Coordinate Control ◽  
Cycle Dependent ◽  
Budding Yeast Cell Cycle

In several systems, including budding yeast, cell cycle-dependent changes in the transcriptome are well studied. In contrast, few studies queried the proteome during cell division. There is also little information about dynamic changes in metabolites and lipids in the cell cycle. Here, the authors present such information for dividing yeast cells.

scholarly journals Specific Inhibition of Elm1 Kinase Activity Reveals Functions Required for Early G1 Events

2003 ◽  
Vol 23 (17) ◽  
pp. 6327-6337 ◽  
Author(s):  
Aparna Sreenivasan ◽  
Anthony C. Bishop ◽  
Kevan M. Shokat ◽  
Douglas R. Kellogg
Keyword(s):  
Cell Cycle ◽  
Cell Division ◽  
Cell Growth ◽  
Kinase Activity ◽  
Budding Yeast ◽  
Specific Inhibition ◽  
Bud Emergence ◽  
Wee1 Kinase ◽  
Yeast Homolog

ABSTRACT In budding yeast, the Elm1 kinase is required for coordination of cell growth and cell division at G2/M. Elm1 is also required for efficient cytokinesis and for regulation of Swe1, the budding yeast homolog of the Wee1 kinase. To further characterize Elm1 function, we engineered an ELM1 allele that can be rapidly and selectively inhibited in vivo. We found that inhibition of Elm1 kinase activity during G2 results in a phenotype similar to the phenotype caused by deletion of the ELM1 gene, as expected. However, inhibition of Elm1 kinase activity earlier in the cell cycle results in a prolonged G1 delay. The G1 requirement for Elm1 kinase activity occurs before bud emergence, polarization of the septins, and synthesis of G1 cyclins. Inhibition of Elm1 kinase activity during early G1 also causes defects in the organization of septins, and inhibition of Elm1 kinase activity in a strain lacking the redundant G1 cyclins CLN1 and CLN2 is lethal. These results demonstrate that the Elm1 kinase plays an important role in G1 events required for bud emergence and septin organization.

scholarly journals Spindle-independent condensation-mediated segregation of yeast ribosomal DNA in late anaphase

2005 ◽  
Vol 168 (2) ◽  
pp. 209-219 ◽  
Author(s):  
Félix Machín ◽  
Jordi Torres-Rosell ◽  
Adam Jarmuz ◽  
Luis Aragón
Keyword(s):  
Cell Division ◽  
Ribosomal Dna ◽  
Budding Yeast ◽  
Mitotic Cell ◽  
Yeast Genome ◽  
Daughter Cells ◽  
Late Anaphase ◽  
Mother And Daughter ◽  
The Right ◽  
Chromosome Resolution

Mitotic cell division involves the equal segregation of all chromosomes during anaphase. The presence of ribosomal DNA (rDNA) repeats on the right arm of chromosome XII makes it the longest in the budding yeast genome. Previously, we identified a stage during yeast anaphase when rDNA is stretched across the mother and daughter cells. Here, we show that resolution of sister rDNAs is achieved by unzipping of the locus from its centromere-proximal to centromere-distal regions. We then demonstrate that during this stretched stage sister rDNA arrays are neither compacted nor segregated despite being largely resolved from each other. Surprisingly, we find that rDNA segregation after this period no longer requires spindles but instead involves Cdc14-dependent rDNA axial compaction. These results demonstrate that chromosome resolution is not simply a consequence of compacting chromosome arms and that overall rDNA compaction is necessary to mediate the segregation of the long arm of chromosome XII.

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