scholarly journals On the inference of positive and negative species associations and their relation to abundance

2021 ◽  
Author(s):  
Andrew J Rominger

Why do rare species persist in ecosystems? Rare species seem to be at a disadvantage by pure probabilistic odds and perhaps also from poorly adapted species-environment and species-species interactions, though negative density-dependence may help rare species persist. The question of rarity and persistence thus remains unresolved. In a recent paper, Calatayuda et al. (CEA) inferred species-species association networks from spatially replicated abundance data across many taxa and environments. CEA found that rare species were over-represented in positive association networks whereas common species were over-represented in negative association networks. However, the use of abundance and co-occurrence data to infer true species associations is difficult and often inaccurate. This issue arises in no small part because the underlying null models used to infer associations themselves are known to have type I and II error problems in real world applications. Here, I show that the finding of rare species being more represented in positive association networks as found by CEA can be explained by statistical artifacts in the inference of species associations from abundance data. It would therefore not be supported to assign biological interpretations to these findings until more data can be brought to bear on the subject or association types and the persistence of rare species.

2021 ◽  
Vol 55 (2) ◽  
pp. 361-377
Author(s):  
N. I. Borzov ◽  
F. M. Bortnikov ◽  
A. V. Matveev ◽  
V. I. Gmoshinskiy

The results of the first study of the species diversity of myxomycetes of the Rdeysky State Nature Reserve are presented. The 201 field specimens of sporophores belonging to 56 morphospecies from 27 genera, ten families, and six orders were collected from September 30 to October 5, 2020. Fifty-two species of these were new for the Novgorod Region. The most common species at the reserve were Arcyria affinis, Hemitrichia calyculata, Lycogala epidendrum, Metatrichia vesparia, Physarum album, Trichia decipiens, and T. varia. Additionally, detailed morphological descriptions of two rare species Amaurochaete trechispora and Trichia crateriformis are given.


2016 ◽  
Vol 371 (1694) ◽  
pp. 20150269 ◽  
Author(s):  
Santiago Soliveres ◽  
Peter Manning ◽  
Daniel Prati ◽  
Martin M. Gossner ◽  
Fabian Alt ◽  
...  

Species diversity promotes the delivery of multiple ecosystem functions (multifunctionality). However, the relative functional importance of rare and common species in driving the biodiversity–multifunctionality relationship remains unknown. We studied the relationship between the diversity of rare and common species (according to their local abundances and across nine different trophic groups), and multifunctionality indices derived from 14 ecosystem functions on 150 grasslands across a land-use intensity (LUI) gradient. The diversity of above- and below-ground rare species had opposite effects, with rare above-ground species being associated with high levels of multifunctionality, probably because their effects on different functions did not trade off against each other. Conversely, common species were only related to average, not high, levels of multifunctionality, and their functional effects declined with LUI. Apart from the community-level effects of diversity, we found significant positive associations between the abundance of individual species and multifunctionality in 6% of the species tested. Species-specific functional effects were best predicted by their response to LUI: species that declined in abundance with land use intensification were those associated with higher levels of multifunctionality. Our results highlight the importance of rare species for ecosystem multifunctionality and help guiding future conservation priorities.


1987 ◽  
Vol 82 (1) ◽  
pp. 119-124 ◽  
Author(s):  
M. Dora Feliciangeli

A study on the ecology of phlebotomine sandfly fauna in a restricted focus of cutaneous leishmaniasis in northern Venezuela was undertaken in order to investigate the species responsible for the transmission. The study area and catching methods for phlebotomine sandflies are described. A total of 9,061 females and 1,662 males were collected during a year-term study. 12 species of Lutzomya and 1 species of Brumptomya sp. were identified. Absolute and relative abundance and ocurrence for each species were determined. The rel ative occurrence allowed to distinguish the common species, viz. L. panamensis, L. ovallesi, L. gomezi, L. tinidadensis, L. atroclavata, L. cayennensis, L. shannoni and L. olmeca bicolor from the rare species vis., L. punctigeniculata, L. rangeliana, L. evansi and L. dubitans. General comments on the species composition of the sandfly fauna in this locality are made.


Author(s):  
Anjana Suresh Unniachan ◽  
Nisha Krishnavilasom Jayakumari ◽  
Shruthi Sethuraman

Periodontal diseases result in the inflammation of the supporting structures of the teeth, thereby leading to attachment loss and bone loss. One of the main etiological factors responsible for this condition is the presence of subgingival biofilms, comprising microorganisms, namely bacteria, viruses, and fungi. Candida species is one of the fungi reported to be found in periodontal disease which is suggestive of the presence of an association between these variables. The aim of this systematic review was to evaluate the association of Candida species with periodontal disease and determine the prevalence of these species in the patients affected with this disease. The articles related to the subject of interest were searched in several databases, including the PubMed, Web of Science, Google Scholar Medline, Embase, Cochrane Library, and Scopus. The search process was accomplished using three keywords, namely ‘‘Candida species’’, ‘‘Chronic periodontitis’’, and ‘‘Gingivitis’’. All the identified studies were comprehensively evaluated for the association of Candida species with periodontal disease. This systematic review included 23 articles, which assessed the prevalence of Candida species in periodontal diseases. The results of 21 studies were indicative of a positive association between Candida species and periodontal diseases. Accordingly, it was concluded that there is a strong association between the presence of Candida species and periodontal diseases.


1978 ◽  
Vol 56 (4) ◽  
pp. 663-675 ◽  
Author(s):  
C. L. McLay

The population biologies of Cyprinotus carolinensis, Herpetocypris reptans, Cypricercus reticulatus, and Candona decora in a spring-fed, temporary, winter puddle in Vancouver, Canada, were studied during 1967–1969. All species emerged at the same time in the fall, when the puddle filled, and competed to reach maturity. The order of maturation was Candona, Cyprinotus, Cypricercus, and Herpetocypris. Abundance was positively related to adult size of each species. Survivorship and fecundity patterns are given for Herpetocypris and Cyprinotus. Survivorship is closest to the type-I kind.All species have similar feeding appendages and ate grass detritus and its microinhabitants. They differed in their spatial distribution, each species being most abundant along a section of the rut. They also differed in their mobility and foraging patterns. The presence of grass was effective in restricting dispersal. Distribution and abundance of these species may be accounted for either in terms of competitive interactions or in terms of adaptation to physical differences in the environment.


Author(s):  
Ioannis N. Kouris

Research in association rules mining has initially concentrated in solving the obvious problem of finding positive association rules; that is rules among items that exist in the stored transactions. It was only several years after that the possibility of finding also negative association rules became especially appealing and was investigated. Nevertheless researchers based their assumptions regarding negative association rules on the absence of items from transactions. This assumption though besides being dubious, since it equated the absence of an item with a conflict or negative effect on the rest items, it also brought out a series of computational problems with the amount of possible patterns that had to be examined and analyzed. In this work we give an overview of the works having engaged with the subject until now and present a novel view for the definition of negative influence among items.


Author(s):  
J. Mauchline

Schistomysis kervillei (G. O. Sars) is a common species in Loch Ewe, Gairloch and Gruinard Bay in north-west Scotland and a rare species in the Firth of Clyde. It breeds throughout the year but most intensely in the spring and summer, to produce a spring and summer generation of young. The maximum number of young found in a marsupium was 47. The species is omnivorous. Its biology is briefly compared with that of S. spiritus (Norman) and S. ornata (G. O. Sars).


Botany ◽  
2010 ◽  
Vol 88 (10) ◽  
pp. 912-922 ◽  
Author(s):  
Virginia Chávez ◽  
S. Ellen Macdonald

We explored interactions among plant growth forms in the understory of mature boreal mixedwood forests in western Canada by investigating the competitive influence of erect shrubs on herbs (forbs and grasses). We established 10 pairs of plots; all erect shrubs were removed in one plot of each pair (removals) and left intact in the other plot (controls). Two years later, we harvested all aboveground biomass of the herbaceous layer (herb biomass: this included graminoids, forbs, trailing shrubs, and species with a woody base but not woody stems) from the 20 plots. We tested for significant differences in understory species biomass and composition between control and removal plots and examined the influence of 25 environmental factors on species composition of the herbaceous layer. Competition intensity was measured by the natural logarithm of response ratio (ln RR) index based on herb biomass. After erect shrub removal, there was a significant increase in herb biomass, mostly due to an increase of the most common species (e.g., Cornus canadensis Linnaeus, Linnaea borealis Linnaeus). The values of competition intensity (ln RR) varied among herb species but were, overall, positive, indicating a release from competition following shrub removal. Composition of the herbaceous layer was significantly different between removal and control plots and was also significantly related to seven environmental factors, which explained 40% of the variation in composition. Our study suggests that there is asymmetric competition for light between erect shrub and herb species in boreal ecosystems.


Author(s):  
Giampio D’Amico

Riassunto - La risposta dei lepidotteri diurni agli effetti del fuoco è estremamente variabile. Per approfondire le attuali conoscenze sull’argomento in italia sono state indagate 5 aree boscate lombarde collinari o montane percorse dal fuoco. La ricchezza in specie di farfalle diurne e la loro abbondanza relativa sono state registrate nel corso di campionamenti condotti mensilmente tra giugno e agosto 2000 lungo due transetti campione limitrofi in ogni area oggetto di studio: uno danneggiato dal fuoco e l’altro (di controllo) mai o poco interessato dall’incendio. Per ogni specie rilevata sono state prese in considerazione le preferenze di habitat. Dalla ricerca è emerso sostanzialmente che in aree boscate di non elevato pregio naturalistico, come quelle indagate, l’azione del fuoco può costituire un pericolo reale per specie nemorali e non comuni (es. Lasiommata achine, Limenitis populi), mentre può originare ambienti nuovi per specie non esclusivamente forestali o comunque svantaggiate dall’infittirsi dei boschi (Leptidea sinapis, Melitaea athalia), finendo quindi per costituire in alcuni casi un elemento di arricchimento delle popolazioni di farfalle diurne locali, anche se limitato per lo più a specie di ambienti transitori di interesse conservazionistico non particolarmente elevato. L’utilizzo dell’indice di Sørensen per valutare la somiglianza specifica tra ambiente incendiato e di controllo non ha fornito risultati significativi. interventi di gestione post-incendio in aree forestali come quelle oggetto di studio, oltre a tener presente considerazioni di ordine generale sulle cause di minaccia dei lepidotteri diurni in italia, si dovrebbero basare sui risultati di ulteriori indagini di cui vengono indicate le modalità eventualmente da adottare a partire dal quadro conoscitivo iniziale fornito dalla presente ricerca.Abstract - Butterflies and fires: a survey in forests of Lombardy (Lepidoptera Hesperioidea, Papilionoidea). The response of butterflies to the effects of fire is extremely variable. in order to improve the state-of-the-art knowledge on the subject in Italy, five wooded areas interested by fire in the region of Lombardy (Northern italy) have been investigated. Butterfly richness and relative abundance have been recorded through monthly surveys carried out between June and August 2000. For each area, two neighboring transects have been analyzed, respectively damaged and not damaged by fire. The latter was used as a reference for comparison. The habitat preferences have been analyzed for each sampled species. Results show that the action of fire can work as a real danger for nemoral and non common species (e.g., Lasiommata achine, Limenitis populi) in wooded areas of poor ecological value. on the other hand, fire can create new habitats for species which are not exclusively nemoral or - more generally- for butterflies which need open habitats and cannot colonyze forests (e.g., Leptidea sinapis, Melitaea athalia). The Sørensen index has also been used to evaluate the specific similarities between the investigated areas, but it has not given significant results. The findings of this research can be used to plan ad-hoc post-fire management actions in forestal areas as a complement to the general considerations on the causes of threat of diurnal Lepidoptera in italy.


Blood ◽  
2012 ◽  
Vol 120 (21) ◽  
pp. 4003-4003
Author(s):  
Lara Pochintesta ◽  
Silvia Mangiacavalli ◽  
Federica Cocito ◽  
Cristiana Pascutto ◽  
Alessandra Pompa ◽  
...  

Abstract Abstract 4003 Skeletal related events (SREs) are a significant cause of morbidity and mortality in multiple myeloma (MM). Markers of bone turn-over, in particular serum C-terminal telopeptide of type I collagen (CTX), can be used for monitoring early signs of bone damage either in osteoporosis or in neoplasm such as Multiple Myeloma. Since serum CTX levels are significantly decreased during bisphosphonate treatments (Dennis, N Engl J Med 2008), it is not clear whether serum CTX monitoring still retain a role in predicting SREs once bisphosphonate treatments was started. Aim of this study was to test whether serum CTX monitoring significantly correlates with active bone disease in a population of MM patients irrespective of concomitant bisphosphonate treatment. An unselected cohort of 87 patients with multiple myeloma diagnosed at our Hematology Division with the following characteristics entered this study: the availability of a baseline determination of serum CTX prior to start bisphosphonate therapy, multiple sequential serum CTX determinations (≥2 performed with an interval of at least 4 weeks), a radiologic evaluation available at the time of any SREs. The study was approved by our local ethical committee and conducted according to Helsinki Declaration guidelines. Patients baseline characteristics were the following: M/F 59%/41%, median age 60 (range 37–86), Durie and Salmon stage I/II/III (11%/14%/75%). During the study period (median follow-up 2.8 year, range 0.4–21 years), 73 patients (83%) experienced at least one SRE. Development of SRE was evaluated by standard skeletal x-ray, CT or MRI scan. Serum CTX was measured by an enzyme chemiluminescence method. A total of 260 serum CTX determinations were available for statistical analysis (median number of determinations for each patient 3, range 2–9). Univariate analysis found a statistically significant association between serum CTX and bone disease status with higher values in patients with active lytic lesions when compared to patients without radiological evidence of bone disease (median value 0.411 vs 0.356, p<0.001). By contrast, we observed significantly lower serum CTX values in patients under bisphosphonates treatment (median value 0.160 vs 0.355, p=<0.001). Association between serum CTX values, bone disease status and active bisphosphonates treatment was analyzed with a time-series linear model, accounting for measurement being repeated sequentially on each patient (random-effects GLS regression). Bone disease status and bisphosphonates treatment resulted significantly and independently associated to serum CTX (regression coefficient 0.222, 95%CI: 0.107–0.338, p<0.001 and 0.208 95%,CI: 0.320–0.096, p<0.001 respectively for bone disease status and bisphosphonates, cfr Tab 1). In addition, variations of CTX serum levels correlated significantly with the presence of active bone disease even under treatment with bisphosphonates (p<0.001). In conclusion, this study confirmed a positive association between serum CTX and presence of active bone disease. In addition serum CTX levels show a significant decrease under treatment with bisphosphonates. Taking into account these observations, patient-specific variations rather than the absolute serum CTX value should be used for detecting the onset of new SREs during a concomitant bysphosphonates treatment. Tab 1: Levels of serum CTX according to bone disease status and bisphosphonates treatment. Bisphosphonates treatment Progression in bone disease Active None Yes 0.219 (0.03–1.79) 0.533 (0.02–4.14) No 0.139 (0.03–0.69) 0.345 (0.071–1.57) Disclosures: No relevant conflicts of interest to declare.


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