scholarly journals GiPS: Genomics-informed parent selection uncovers the breeding value of wheat genetic resources

2021 ◽  
Author(s):  
Albert W. Schulthess ◽  
Sandip M. Kale ◽  
Fang Liu ◽  
Yusheng Zhao ◽  
Norman Philipp ◽  
...  

The great efforts spent in the maintenance of past diversity in genebanks are rationalized by the potential role of plant genetic resources in future crop improvement: a concept whose practical implementation has fallen short of expectations. Here, we implement genomics-informed parent selection to expedite pre-breeding without discriminating against non-adapted germplasm. We collect dense genetic profiles for a large winter wheat collection and evaluate grain yield and resistance to yellow rust in representative coresets. Genomic prediction within and across genebanks identified the best parents for PGR x elite derived crosses that outyielded current elite cultivars in multiple field trials.

2004 ◽  
Vol 2 (1) ◽  
pp. 3-21 ◽  
Author(s):  
B. I. G. Haussmann ◽  
H. K. Parzies ◽  
T. Presterl ◽  
Z. Su?i? ◽  
T. Miedaner

HortScience ◽  
2000 ◽  
Vol 35 (3) ◽  
pp. 511A-511
Author(s):  
Peter Bretting

Plants provide humans with food, fiber, feed, ornamentals, industrial products, medicine, shelter, and fuel. As vegetation, they maintain global environmental integrity and the carrying capacity for all life. From an anthropocentric perspective, plants serve as genetic resources (PGR) for sustaining the growing human population. Research on PGR can provide basic knowledge for crop improvement or environmental management that enables renewable, sustainable production of the preceding necessities. PGR also provide the raw material for increasing yield and end product's quality, while requiring fewer inputs (water, nutrients, agrichemicals, etc.). The staples of life—30 or so major grain, oilseed, fiber, and timber species—comprise the “thin green line” vital to human survival, either directly, or through trade and income generation. Many crop genebanks worldwide focus on conserving germplasm of these staples as a shield against genetic vulnerability that may endanger economies and humanity on an international scale. Fewer genebanks and crop improvement programs conserve and develop “minor crops,” so called because of their lesser economic value or restricted cultivation globally. Yet, these minor crops, many categorized as horticultural, may be key to human carrying capacity—especially in geographically or economically marginal zones. The USDA/ARS National Plant Germplasm System (NPGS) contains a great number and diversity of minor crop germplasm. The NPGS, other genebanks, and minor crop breeding programs scattered throughout the world, help safeguard human global carrying capacity by providing the raw genetic material and genetic improvement infrastructure requisite for producing superior minor crops. The latter may represent the best hope for developing new varieties and crops, new crop rotations, and new renewable products that in the future may enhance producer profitability or even ensure producer and consumer survival.


2019 ◽  
Vol 180 (2) ◽  
pp. 124-132 ◽  
Author(s):  
N. P. Loskutova ◽  
T. M. Ozerskaya

The article is dedicated to the mobilization of plant genetic resources from the territories of Indonesia, Sri Lanka (Ceylon) and Nepal to VIR’s collection by means of collecting explorations, germplasm requests and the exchange of accessions. The first, the longest and the only pre-war expedition to Indonesia and Ceylon was undertaken by Prof. V. V. Markovich; it lasted three years (1926–1928). He explored Java, Singapore and Ceylon, where he collected 772 germplasm samples. In 1957, D. V. Ter-Avanesyan, who worked as an agricultural attaché at the USSR Embassy in India, familiarized himself in every detail with plant resources and agriculture in Nepal. The late 1960s were marked by intensification of plant genetic resources introduction and new opportunities to organize regular collecting missions. In the period from 1960 to 1991, there were five plant exploration trips to Indonesia, Sri Lanka (Ceylon) and Nepal. In 1960, D. V. Ter-Avanesyan visited scientific institutions in Java, got acquainted with the main trends in agriculture, and collected 302 plant samples. In 1974, A. G. Lyakhovkin took part in a specialized collecting mission launched to study and collect wild forms and cultivars of rice and various other crops from Nepal. The team visited 16 experiment stations and farms and collected 1170 accessions. In 1985, an expedition team led by E. F. Molchanov collected and studied wild and cultivated forms of subtropical plants in Sri Lanka. The team visited 5 institutes and experiment stations, 3 botanical gardens, and collected 370 accessions. In 1988, another collecting team led by L. A. Burmistrov, whose task was to study the system of nation-wide projects on crop improvement, traveled over four provinces, visited 11 scientific and academic institutions of Nepal, and collected 766 germplasm samples. The last collecting trip to Indonesia was led by N. G. Musatenko in 1991. The team collected 95 varieties and wild forms. In total, the Institute’s collecting and exploration activities in Indonesia, Sri Lanka (Ceylon) and Nepal added 3496 accessions to its collections. In addition to direct collecting in Indonesia, Sri Lanka (Ceylon) and Nepal, VIR has always been replenishing its holdings by seed requests. During the whole pre-war period, from 1925 through 1941, 256 germplasm accessions were added. All in all, from 1948 through 2018, 104 accessions were introduced from Indonesia, Sri Lanka (Ceylon) and Nepal. The greatest number of accessions received by the Institute represented groat crops (over 1400), followed by wheat and barley (458), and industrial crops (627). In total, during the whole period of its existence, the Institute has mobilized 3843 accessions, representing 377 plant species.


2008 ◽  
Vol 6 (3) ◽  
pp. 232-236 ◽  
Author(s):  
Gunjeet Kumar ◽  
B. L. Meena ◽  
Ranjan Kar ◽  
Shailesh K. Tiwari ◽  
K. K. Gangopadhyay ◽  
...  

Brinjal (Solanum melongena L.) is an important solanaceous vegetable in many countries of Asia and Africa. It is a good source of minerals and vitamins in the tropical diets. Assessment of genetic resources is the starting point of any crop improvement programme. In India, the National Bureau of Plant Genetic Resources is the nodal institute for management of germplasm resources of crop plants and holds more than 2500 accessions of brinjal in its genebank. In the present study, morphological diversity in a set of 622 accessions, comprising 543 accessions from indigenous sources and 79 accessions of exotic origin, was assessed. Wide range of variations for 31 descriptors, 13 quantitative and 18 qualitative, were recorded. The wide regional variations for plant, flower and fruit descriptors revealed enough scope for improvement of yield characters by selection. The genetic differences among the landraces are potentially relevant to breeding programmes in that the variability created through hybridization of the contrasting forms could be exploited.


2018 ◽  
Vol 5 (1) ◽  
Author(s):  
Maria Y. Gonzalez ◽  
Stephan Weise ◽  
Yusheng Zhao ◽  
Norman Philipp ◽  
Daniel Arend ◽  
...  

Abstract The scarce knowledge on phenotypic characterization restricts the usage of genetic diversity of plant genetic resources in research and breeding. We describe original and ready-to-use processed data for approximately 60% of ~22,000 barley accessions hosted at the Federal ex situ Genebank for Agricultural and Horticultural Plant Species. The dataset gathers records for three traits with agronomic relevance: flowering time, plant height and thousand grain weight. This information was collected for seven decades for winter and spring barley during the seed regeneration routine. The curated data represent a source for research on genetics and genomics of adaptive and yield related traits in cereals due to the importance of barley as model organism. This data could be used to predict the performance of non-phenotyped individuals in other collections through genomic prediction. Moreover, the dataset empowers the utilization of phenotypic diversity of genetic resources for crop improvement.


2021 ◽  
Vol 12 ◽  
Author(s):  
Johannes Schneider ◽  
Marcel O. Berkner ◽  
Norman Philipp ◽  
Albert W. Schulthess ◽  
Jochen C. Reif

The use of genetic resources in breeding is considered critical to ensure future selection gain, but the absence of important adaptation genes often masks the breeding value of genetic resources for grain yield. Testing genetic resources in a hybrid background has been proposed as a solution to obtain unbiased estimates of breeding values for grain yield. In our study, we evaluated the suitability of European wheat elite lines for implementing this hybrid strategy, focusing on maximizing seed yield in hybrid production and reducing masking effects due to susceptibility to lodging, yellow rust, and leaf rust of genetic resources. Over a 3-year period, 63 wheat elite female lines were crossed with eight male plant genetic resources in a multi-environment field experiment to evaluate seed yield on the female side. Then, the resulting hybrids and their parents were tested for plant height, lodging, and susceptibility to yellow rust and leaf rust in a further field experiment at multiple locations. We found that seed yield was strongly influenced by the elite wheat line choice in addition to environment and observed substantial differences among elite tester lines in their ability to reduce susceptibility to lodging, yellow rust, and leaf rust when the hybrid strategy was implemented. Consequently, breeders can significantly increase the amount of hybrid seed produced in wide crosses through appropriate tester choice and adapt genetic resources of wheat with the hybrid strategy to the modern cropping system.


2019 ◽  
Vol 79 (01S) ◽  
Author(s):  
Kuldeep Singh ◽  
Sandeep Kumar ◽  
S. Raj Kumar ◽  
Mohar Singh ◽  
Kavita Gupta

Plant Genetic Resources (PGR) conserved in gene bank provides genetic variability for efficient utilization in breeding programmes. Pre-breeding is required for broadening the genetic base of the crop through identification of useful traits in un-adapted materials and transfer them into better adapted ones for further breeding. So, pre-breeding is a promising alternative (due to use of un-adapted materials) to link genetic resources and breeding programs. Utilization of PGR in crop improvement programmes including prebreeding have been very limited. Advances in genomics have provided us with high-quality reference genomes, sequencing and re-sequencing platforms with reduced cost, marker and QTL assisted selection, genomic selection and population level genotyping platforms. Further, genome editing tools like, CRISPR/Cas9 and its latest modification base editing technology can be used to generate target specific mutants and are important for establishing gene functions with respect to their phenotypes through developing knockout mutations. These new genomic tools can be used to generate, analyse and manipulate the genetic variability for designing cultivars with the desired traits. The genomic tools has not only accelerated the utilization of PGR but also assisted pre-breeding through rapid selection of trait-specific germplasm, reduced periods in breeding cycle for confirming gene of interest in intermediate material and validation of transfer of gene of interest in the cultivated gene pool. In crops, where limited genetic and genomic resources are available, pre-breeding becomes very challenging. We can say that genomics assisted utilization of PGR and prebreeding has accelerated the pace of introgression of complex traits in different crop cultivars.and yield plateau has already been achieved in these cultivars (Chen et al. 2014a). Under these circumstances, use of Plant Genetic Resources (PGR) in crop improvement programs provides an avenue to solve the problem.


Author(s):  
V.V. Moskalets ◽  
T.Z. Moskalets ◽  
I.V. Grynyk ◽  
O.B. Ovezmyradova ◽  
O.M. Nevmerzhytska

Аim. To create a working collection of the sea buckthorn gene pool for priority breeding trends. Results and Discussion. Scientific and practical results of building up and studying the working collection of the buckthorn gene pool of the Institute of Horticulture of NAAS are presented. Aspects of formation of a working collection and their comparative identification by genetic profiles are analyzed. Morphobiological characteristics and economically valuable features of sea buckthorn plants are summarized. Conclusions. Targeted introduction and studies of the adaptive and productive potentials of sea buckthorn in the experimental fields of the Institute of Horticulture (northern forest-steppe of Ukraine) in 2017-2019 allowed us to transfer the most promising genotypes to the National Center for Plant Genetic Resources of Ukraine (NCPGRU) of the Рlant Production Institute named after VYa Yuriev of NAAS of Ukraine, where, after expert evaluation, they were assigned catalog numbers and included in a list of plants of the genetic bank of Ukraine: F 1-15-1 or Nosivchanka (UA3700073), F 1-15-8S or Mitsna (UA3700079), male form 1-15 -6Ch or Aboryhеn 6/11 (UA3700080), F 1-15-9 or Karotynna (UA3700082), F 1-15-3 or Pamiatka (UA3700076), F 1-15-8V or Soniachne Siayvo (UA3700075), 1-15-11 or Lymonna (UA3700072), F 2-15-73 or Morkviana (UA3700077), F 1-15-5 or Adaptyvna (UA3700078), F 1-15-8B or Osoblyva (UA3700083), F 1-15-6 or Apelsynova (UA3700084), F 6А/11 (UA3700081), and F 1-15-5а or Sribnolysta 5a (UA3700074).


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