scholarly journals Loss of AUXIN RESPONSE FACTOR 4 function alters plant growth, stomatal function and improves tomato tolerance to salinity and osmotic stress

2019 ◽  
Author(s):  
Sarah Bouzroud ◽  
Karla Gasparini ◽  
Guojian Hu ◽  
Maria Antonia Machado Barbosa ◽  
Bruno Luan Rosa ◽  
...  
Keyword(s):  
Plant Growth ◽  
Osmotic Stress ◽  
Stress Responses ◽  
Target Genes ◽  
Soluble Sugars ◽  
Auxin Response ◽  
Response Factors ◽  
Aba Content ◽  
Tolerance To Salinity ◽  
Salt And Osmotic Stress

AbstractAuxin controls multiple aspects of plant growth and development. However, its role in stress responses remains poorly understood. Auxin acts on the transcriptional regulation of target genes, mainly through Auxin Response Factors (ARF). This study focuses on the involvement of SlARF4 in tomato tolerance to salinity and osmotic stress. Using a reverse genetic approach, we found that the antisense down-regulation of SlARF4 promotes root development and density, increases soluble sugars content and maintains chlorophyll content at high levels under stress conditions. Furthermore, ARF4-as displayed higher tolerance to salt and osmotic stress through reduced stomatal conductance coupled with increased leaf relative water content and ABA content under normal and stressful conditions. This increase in ABA content was correlated with the activation of ABA biosynthesis genes and the repression of ABA catabolism genes. cat1, Cu/ZnSOD and mdhar genes were up-regulated in ARF4-as plants which can result in a better tolerance to salt and osmotic stress. A CRISPR/Cas9 induced SlARF4 mutant showed similar growth and stomatal responses as ARF4-as plants, which suggest that arf4-cr can tolerate salt and osmotic stresses. Our data support the involvement of ARF4 as a key factor in tomato tolerance to salt and osmotic stresses and confirm the use of CRISPR technology as an efficient tool for functional reverse genetics studies.

scholarly journals Down Regulation and Loss of Auxin Response Factor 4 Function Using CRISPR/Cas9 Alters Plant Growth, Stomatal Function and Improves Tomato Tolerance to Salinity and Osmotic Stress

Genes ◽  
2020 ◽  
Vol 11 (3) ◽  
pp. 272 ◽  
Author(s):  
Sarah Bouzroud ◽  
Karla Gasparini ◽  
Guojian Hu ◽  
Maria Antonia Machado Barbosa ◽  
Bruno Luan Rosa ◽  
...  
Keyword(s):  
Plant Growth ◽  
Osmotic Stress ◽  
Stress Responses ◽  
Target Genes ◽  
Soluble Sugars ◽  
Auxin Response ◽  
Down Regulation ◽  
Aba Content ◽  
Tolerance To Salinity ◽  
Salt And Osmotic Stress

Auxin controls multiple aspects of plant growth and development. However, its role in stress responses remains poorly understood. Auxin acts on the transcriptional regulation of target genes, mainly through Auxin Response Factors (ARF). This study focuses on the involvement of SlARF4 in tomato tolerance to salinity and osmotic stress. Using a reverse genetic approach, we found that the antisense down-regulation of SlARF4 promotes root development and density, increases soluble sugars content and maintains chlorophyll content at high levels under stress conditions. Furthermore, ARF4-as displayed higher tolerance to salt and osmotic stress through reduced stomatal conductance coupled with increased leaf relative water content and Abscisic acid (ABA) content under normal and stressful conditions. This increase in ABA content was correlated with the activation of ABA biosynthesis genes and the repression of ABA catabolism genes. Cu/ZnSOD and mdhar genes were up-regulated in ARF4-as plants which can result in a better tolerance to salt and osmotic stress. A CRISPR/Cas9 induced SlARF4 mutant showed similar growth and stomatal responses as ARF4-as plants, which suggest that arf4-cr can tolerate salt and osmotic stresses. Our data support the involvement of ARF4 as a key factor in tomato tolerance to salt and osmotic stresses and confirm the use of CRISPR technology as an efficient tool for functional reverse genetics studies.

scholarly journals Plant growth under suboptimal water conditions: early responses and methods to study them

2020 ◽  
Vol 71 (5) ◽  
pp. 1706-1722 ◽  
Author(s):  
Marieke Dubois ◽  
Dirk Inzé
Keyword(s):  
Plant Growth ◽  
Osmotic Stress ◽  
Stress Responses ◽  
Soil Drought ◽  
Growth Media ◽  
Plant Responses ◽  
Short Term ◽  
Environmental Constraint ◽  
Early Stress ◽  
Different Types

Abstract Drought stress forms a major environmental constraint during the life cycle of plants, often decreasing plant yield and in extreme cases threatening survival. The molecular and physiological responses induced by drought have been the topic of extensive research during the past decades. Because soil-based approaches to studying drought responses are often challenging due to low throughput and insufficient control of the conditions, osmotic stress assays in plates were developed to mimic drought. Addition of compounds such as polyethylene glycol, mannitol, sorbitol, or NaCl to controlled growth media has become increasingly popular since it offers the advantage of accurate control of stress level and onset. These osmotic stress assays enabled the discovery of very early stress responses, occurring within seconds or minutes following osmotic stress exposure. In this review, we construct a detailed timeline of early responses to osmotic stress, with a focus on how they initiate plant growth arrest. We further discuss the specific responses triggered by different types and severities of osmotic stress. Finally, we compare short-term plant responses under osmotic stress versus in-soil drought and discuss the advantages, disadvantages, and future of these plate-based proxies for drought.

CaWRKY27 negatively regulates salt and osmotic stress responses in pepper

2019 ◽  
Vol 145 ◽  
pp. 43-51 ◽  
Author(s):  
Jinhui Lin ◽  
Fengfeng Dang ◽  
Yongping Chen ◽  
Deyi Guan ◽  
Shuilin He
Keyword(s):  
Osmotic Stress ◽  
Stress Responses ◽  
Salt And Osmotic Stress

scholarly journals Genome-Wide cis-Regulatory Element Based Discovery of Auxin-Responsive Genes in Higher Plant

Genes ◽  
2021 ◽  
Vol 13 (1) ◽  
pp. 24
Author(s):  
Jianfei Wu ◽  
Fan Gao ◽  
Tongtong Li ◽  
Haixia Guo ◽  
Li Zhang ◽  
...  
Keyword(s):  
Target Genes ◽  
Regulatory Element ◽  
Regulatory Elements ◽  
Auxin Response ◽  
Higher Plant ◽  
Response Factors ◽  
Auxin Response Factors ◽  
Genome Wide ◽  
A Genome ◽  
Almost All

Auxin has a profound impact on plant physiology and participates in almost all aspects of plant development processes. Auxin exerts profound pleiotropic effects on plant growth and differentiation by regulating the auxin response genes’ expressions. The classical auxin reaction is usually mediated by auxin response factors (ARFs), which bind to the auxin response element (AuxRE) in the promoter region of the target gene. Experiments have generated only a limited number of plant genes with well-characterized functions. It is still unknown how many genes respond to exogenous auxin treatment. An economical and effective method was proposed for the genome-wide discovery of genes responsive to auxin in a model plant, Arabidopsis thaliana (A. thaliana). Our method relies on cis-regulatory-element-based targeted gene finding across different promoters in a genome. We first exploit and analyze auxin-specific cis-regulatory elements for the transcription of the target genes, and then identify putative auxin responsive genes whose promoters contain the elements in the collection of over 25,800 promoters in the A. thaliana genome. Evaluating our result by comparing with a published database and the literature, we found that this method has an accuracy rate of 65.2% (309/474) for predicting candidate genes responsive to auxin. Chromosome distribution and annotation of the putative auxin-responsive genes predicted here were also mined. The results can markedly decrease the number of identified but merely potential auxin target genes and also provide useful clues for improving the annotation of gene that lack functional information.

scholarly journals Genome-Wide Identification, Characterization and Expression Analysis of the CIPK Gene Family in Potato (Solanum tuberosum L.) and the Role of StCIPK10 in Response to Drought and Osmotic Stress

2021 ◽  
Vol 22 (24) ◽  
pp. 13535
Author(s):  
Rui Ma ◽  
Weigang Liu ◽  
Shigui Li ◽  
Xi Zhu ◽  
Jiangwei Yang ◽  
...  
Keyword(s):  
Abiotic Stress ◽  
Solanum Tuberosum ◽  
Plant Growth ◽  
Osmotic Stress ◽  
Stress Responses ◽  
Solanum Tuberosum L ◽  
Abiotic Stress Tolerance ◽  
Stomatal Closure ◽  
Interacting Protein ◽  
Reverse Transcription Pcr

The potato (Solanum tuberosum L.), one of the most important food crops worldwide, is sensitive to environmental stresses. Sensor–responder complexes comprising calcineurin B-like (CBL) proteins and CBL-interacting protein kinases (CIPKs) not only modulate plant growth and development but also mediate numerous stress responses. Here, using a Hidden Markov Model and BLAST searches, 27 CIPK genes were identified in potato and divided into five groups by phylogenetic analysis and into two clades (intron-poor and intron-rich) by gene structure analysis. Quantitative reverse-transcription PCR (qRT-PCR) assays revealed that StCIPK genes play important roles in plant growth, development and abiotic stress tolerance. Up-regulated expression of StCIPK10 was significantly induced by drought, PEG6000 and ABA. StCIPK10 enhances both the ability of potato to scavenge reactive oxygen species and the content of corresponding osmoregulation substances, thereby strengthening tolerance to drought and osmotic stress. StCIPK10 is located at the intersection between the abscisic acid and abiotic stress signaling pathways, which control both root growth and stomatal closure in potato. In addition, StCIPK10 interacts with StCBL1, StCBL4, StCBL6, StCBL7, StCBL8, StCBL11 and StCBL12, and is specifically recruited to the plasma membrane by StCBL11.

Auxin response factors and plant growth and development

2011 ◽  
Vol 33 (12) ◽  
pp. 1335-1346 ◽  
Author(s):  
Zhen-Hua LIU ◽  
Yan-Chong YU ◽  
Feng-Ning XIANG
Keyword(s):  
Plant Growth ◽  
Growth And Development ◽  
Plant Growth And Development ◽  
Auxin Response ◽  
Response Factors ◽  
Auxin Response Factors

The Arabidopsis AP2/ERF transcription factor RAP2.6 participates in ABA, salt and osmotic stress responses

Gene ◽  
2010 ◽  
Vol 457 (1-2) ◽  
pp. 1-12 ◽  
Author(s):  
Qiang Zhu ◽  
Jiantao Zhang ◽  
Xiaoshu Gao ◽  
Jianhua Tong ◽  
Langtao Xiao ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Osmotic Stress ◽  
Stress Responses ◽  
Salt And Osmotic Stress ◽  
Erf Transcription Factor

scholarly journals Two Auxin Response Elements Fine-Tune PINOID Expression During Gynoecium Development in Arabidopsis thaliana

Biomolecules ◽  
2019 ◽  
Vol 9 (10) ◽  
pp. 526
Author(s):  
André Kuhn ◽  
Bethany Runciman ◽  
William Tasker-Brown ◽  
Lars Østergaard
Keyword(s):  
Dna Binding ◽  
Binding Sites ◽  
Target Genes ◽  
Regulatory Elements ◽  
Auxin Response ◽  
Response Factors ◽  
Regulatory Regions ◽  
Dna Binding Sites ◽  
Gene Regulatory ◽  
Gynoecium Development

The plant hormone auxin controls almost all aspects of plant development through the gene regulatory properties of auxin response factors (ARFs) which bind so-called auxin responsive elements (AuxREs) in regulatory regions of their target genes. It has been proposed that ARFs interact and cooperate with other transcription factors (TFs) to bind to complex DNA-binding sites harboring cis-elements for several TFs. Complex DNA-binding sites have not been studied systematically for ARF target genes. ETTIN (ETT; ARF3) is a key regulator of gynoecium development. Cooperatively with its interacting partner INDEHISCENT (IND), ETT regulates PINOID (PID), a gene involved in the regulation gynoecium apical development (style development). Here, we mutated two ETT-bound AuxREs within the PID promoter and observed increased style length in gynoecia of plants carrying mutated promoter variants. Furthermore, mutating the AuxREs led to ectopic repression of PID in one developmental context while leading to ectopically upregulated PID expression in another stage. Our data also show that IND associates with the PID promoter in an auxin-sensitive manner. In summary, we demonstrate that targeted mutations of cis-regulatory elements can be used to dissect the importance of single cis-regulatory elements within complex regulatory regions supporting the importance of the ETT-IND interaction for PID regulation. At the same time, our work also highlights the challenges of such studies, as gene regulation is highly robust, and mutations within gene regulatory regions may only display subtle phenotypes.

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