scholarly journals Pan-genome analysis identifies intersecting roles for Pseudomonas specialized metabolites in potato pathogen inhibition

2019 ◽  
Author(s):  
Francesca L. Stefanato ◽  
Christine Trippel ◽  
Simon Uszkoreit ◽  
Laura Ferrafiat ◽  
Lucia Grenga ◽  
...  

AbstractAgricultural soil harbors a diverse microbiome that can form beneficial relationships with plants, including the inhibition of plant pathogens. Pseudomonas are one of the most abundant bacterial genera in the soil and rhizosphere and play important roles in promoting plant growth and preventing disease. However, the genetic determinants of this beneficial activity are only partially understood, especially in relation to specialized metabolite production. Here, we genetically and phenotypically characterize the Pseudomonas fluorescens population in commercial potato field soils and identify strong correlations between specialized metabolite biosynthetic pathways and antagonism of the potato pathogens Streptomyces scabies and Phytophthora infestans. Genetic and chemical analyses identified hydrogen cyanide and cyclic lipopeptides as key specialized metabolites associated with S. scabies inhibition. We show that a single potato field contains a hugely diverse and dynamic population of Pseudomonas bacteria, whose capacity to produce specialized metabolites is shaped both by plant colonization and defined environmental inputs.

eLife ◽  
2021 ◽  
Vol 10 ◽  
Author(s):  
Alba Pacheco-Moreno ◽  
Francesca L Stefanato ◽  
Jonathan J Ford ◽  
Christine Trippel ◽  
Simon Uszkoreit ◽  
...  

Agricultural soil harbors a diverse microbiome that can form beneficial relationships with plants, including the inhibition of plant pathogens. Pseudomonas spp. are one of the most abundant bacterial genera in the soil and rhizosphere and play important roles in promoting plant health. However, the genetic determinants of this beneficial activity are only partially understood. Here, we genetically and phenotypically characterize the Pseudomonas fluorescens population in a commercial potato field, where we identify strong correlations between specialized metabolite biosynthesis and antagonism of the potato pathogens Streptomyces scabies and Phytophthora infestans. Genetic and chemical analyses identified hydrogen cyanide and cyclic lipopeptides as key specialized metabolites associated with S. scabies inhibition, which was supported by in planta biocontrol experiments. We show that a single potato field contains a hugely diverse and dynamic population of Pseudomonas bacteria, whose capacity to produce specialized metabolites is shaped both by plant colonization and defined environmental inputs.


1995 ◽  
Vol 73 (S1) ◽  
pp. 1275-1283 ◽  
Author(s):  
Shigehito Takenaka

To develop efficient control measures against fungal plant pathogens, the dynamics of host plant colonization during disease development and the interactions among fungi within host plant tissues need to be clarified. These studies require accurate quantitative estimation of specific fungal biomass in plant tissues. This has been approached by direct-microscopic methods, cultural methods, chemical determinations of fungal components, serological methods, and molecular methods. Among these methods, serological and molecular methods provide rapid, specific, and sensitive quantitative measures of fungal biomass in host plant tissues. Therefore, studies on fungal dynamics of host plant colonization using these two methods are presented. Some examples of species interactions among pathogenic fungi within host plants, such as synergism and competition, are reviewed and the usefulness of serological and molecular methods for studies on these interactions is presented. These quantitative methods will provide helpful information for understanding the ecology of plant pathogenic fungi, such as the dynamics of host plant colonization and species interactions. Key words: quantitative methods, fungal biomass, ELISA, PCR, fungal colonization, species interaction.


Geoderma ◽  
2019 ◽  
Vol 335 ◽  
pp. 112-122 ◽  
Author(s):  
Saraswoti Neupane ◽  
Claudia Goyer ◽  
Bernie J. Zebarth ◽  
Sheng Li ◽  
Sean Whitney

2019 ◽  
Vol 202 (4) ◽  
Author(s):  
Zhongmeng Bao ◽  
Hai-Lei Wei ◽  
Xing Ma ◽  
Bryan Swingle

ABSTRACT Flagella power bacterial movement through liquids and over surfaces to access or avoid certain environmental conditions, ultimately increasing a cell’s probability of survival and reproduction. In some cases, flagella and chemotaxis are key virulence factors enabling pathogens to gain entry and attach to suitable host tissues. However, flagella are not always beneficial; both plant and animal immune systems have evolved receptors to sense the proteins that make up flagellar filaments as signatures of bacterial infection. Microbes poorly adapted to avoid or counteract these immune functions are unlikely to be successful in host environments, and this selective pressure has driven the evolution of diverse and often redundant pathogen compensatory mechanisms. We tested the role of AlgU, the Pseudomonas extracytoplasmic function sigma factor σE/σ22 ortholog, in regulating flagellar expression in the context of Pseudomonas syringae-plant interactions. We found that AlgU is necessary for downregulating bacterial flagellin expression in planta and that this results in a corresponding reduction in plant immune elicitation. This AlgU-dependent regulation of flagellin gene expression is beneficial to bacterial growth in the course of plant infection, and eliminating the plant’s ability to detect flagellin makes this AlgU-dependent function irrelevant for bacteria growing in the apoplast. Together, these results add support to an emerging model in which P. syringae AlgU functions at a key control point that serves to optimize the expression of bacterial functions during host interactions, including minimizing the expression of immune elicitors and concomitantly upregulating beneficial virulence functions. IMPORTANCE Foliar plant pathogens, like Pseudomonas syringae, adjust their physiology and behavior to facilitate host colonization and disease, but the full extent of these adaptations is not known. Plant immune systems are triggered by bacterial molecules, such as the proteins that make up flagellar filaments. In this study, we found that during plant infection, AlgU, a gene expression regulator that is responsive to external stimuli, downregulates expression of fliC, which encodes the flagellin protein, a strong elicitor of plant immune systems. This change in gene expression and resultant change in behavior correlate with reduced plant immune activation and improved P. syringae plant colonization. The results of this study demonstrate the proximate and ultimate causes of flagellar regulation in a plant-pathogen interaction.


1985 ◽  
Vol 71 (5) ◽  
pp. 441-448 ◽  
Author(s):  
Carlo La Vecchia ◽  
Adriano Decarli

Death certification rates from 17 non-sexual and 4 sexual cancers were used to examine patterns of correlation between various cancers within the 20 Italian regions. A large number of strongly positive correlations emerged, reflecting the geographical distribution of cancer mortality in Italy which shows substantially higher rates for several common sites in northern areas. The most notable findings were the high positive correlations between various tobacco-related cancers in both sexes (however somewhat higher in males), the positive correlations between most intestinal sites and between a well defined group of other cancers including intestines in both sexes, breast and ovary in females and prostate in males, previously described in several widely heterogeneous populations. Various alcohol-related cancers showed high positive coefficients in males but not in females. Several suggestions which emerged from previous correlation studies but which generally lacked convincing biological or epidemiological consistency were not confirmed by the present data. Conversely, a few strong correlations emerged in the present study which are not explainable in terms of available knowledge of the causes of cancer, or obvious confounding. Though probably incidental, the existence of these correlations between cancers with widely heterogeneous or largely undefined etiology is still an indirect indication that these neoplasms are largely avoidable, since it is unlikely that the same genetic determinants are strongly associated with such different malignancies.


1994 ◽  
Vol 19 (1) ◽  
pp. 115-115
Author(s):  
David Noetzle ◽  
Jennifer Miller

Abstract Continued failure of most insecticides for control of CPB in the Anoka Sand Plains growing area stimulated further comparisons of biologicals, inorganics, and synthetic materials for CPB management. Soils are sands at this location. Plots were established in an irrigated commercial potato field. The individual plot consisted of 4—25 ft rows with a row width of 3 ft. Treatments were arranged in a randomized complete block design and were replicated 4 times. The grower treated all of the field, including the plots, with Thiodan and Asana XL at 1.0 lb and 0.5 lb Al/acre respectively on 8 Jul and 16 Jul. Plot treatments were applied on 25 Jun, 6 and 19 Jul using a CO2 hand sprayer with about 20 gals total material/acre and 40 psi pressure. Larval ratings and defoliation estimates were taken on 6 and 19 Jul. Vines were killed on 3 Aug and yields collected on 18 Aug. The center 2 rows of each plot were harvested for yield.


1996 ◽  
Vol 21 (1) ◽  
pp. 146-146
Author(s):  
David M. Noetzel ◽  
Jennifer Miller

Abstract A trial was established in an irrigated commercial potato field adjacent to a commercial planting of a NatureMark NewLeafⓇ field. Plots were 4-36 inch rows by 25’ in length. Treatments were arranged in a RCB and replicated 4 times. Treatments were applied on 8 & 26 June and 8 July using a CO2 hand held sprayer. Total material per acre was approximately 20 gal applied using 40 psi. CPB populations were very high at this site and late readings are confused by non-random feeding. Yields were not taken.


2003 ◽  
Vol 67 (1) ◽  
pp. 16-37 ◽  
Author(s):  
Stanton B. Gelvin

SUMMARY Agrobacterium tumefaciens and related Agrobacterium species have been known as plant pathogens since the beginning of the 20th century. However, only in the past two decades has the ability of Agrobacterium to transfer DNA to plant cells been harnessed for the purposes of plant genetic engineering. Since the initial reports in the early 1980s using Agrobacterium to generate transgenic plants, scientists have attempted to improve this “natural genetic engineer” for biotechnology purposes. Some of these modifications have resulted in extending the host range of the bacterium to economically important crop species. However, in most instances, major improvements involved alterations in plant tissue culture transformation and regeneration conditions rather than manipulation of bacterial or host genes. Agrobacterium-mediated plant transformation is a highly complex and evolved process involving genetic determinants of both the bacterium and the host plant cell. In this article, I review some of the basic biology concerned with Agrobacterium-mediated genetic transformation. Knowledge of fundamental biological principles embracing both the host and the pathogen have been and will continue to be key to extending the utility of Agrobacterium for genetic engineering purposes.


Biosensors ◽  
2018 ◽  
Vol 8 (4) ◽  
pp. 129 ◽  
Author(s):  
Maksim Nikitin ◽  
Ksenia Deych ◽  
Inessa Grevtseva ◽  
Natalya Girsova ◽  
Maria Kuznetsova ◽  
...  

Fungal diseases of plants are of great economic importance causing 70–80% of crop losses associated with microbial plant pathogens. Advanced on-site disease diagnostics is very important to maximize crop productivity. In this study, diagnostic systems have been developed for simultaneous detection and identification of six fungal pathogens using 48-well microarrays (micromatrices) for qPCR. All oligonucleotide sets were tested for their specificity using 59 strains of target and non-target species. Detection limit of the developed test systems varied from 0.6 to 43.5 pg of DNA depending on target species with reproducibility within 0.3−0.7% (standard deviation). Diagnostic efficiency of test systems with stabilized and freeze-dried PCR master-mixes did not significantly differ from that of freshly prepared microarrays, though detection limit increased. Validation of test systems on 30 field samples of potato plants showed perfect correspondence with the results of morphological identification of pathogens. Due to the simplicity of the analysis and the automated data interpretation, the developed microarrays have good potential for on-site use by technician-level personnel, as well as for high-throughput monitoring of fungal potato pathogens.


1998 ◽  
Vol 23 (1) ◽  
pp. 127-127
Author(s):  
Craig A. Longtine ◽  
David W. Ragsdale ◽  
Edward B. Radcliffe

Abstract This trial was located in a non-irrigated commercial potato field near Hollandale in southern Minnesota. Plots consisted of a single treatment row 25 ft in length bordered on each side by two untreated guard rows. Plant spacing was 36 inches between rows and 12 inches between plants within rows. Treatments were replicated four times in a completely randomized design. Treatments were applied with a CO2-pressurized backpack sprayer fitted with a single Teejet 8003-E flat-fan nozzle delivering 40 gpa/acre at 35 psi. All treatments were applied on 2 Jul. Spraying conditions were windy, but winds were constant. In evaluating the treatments, direct counts of early instars (first and second) and late instars (third and fourth) were made on every plant in each plot on 3 Jul. The data were subjected to analyses of variance following log10(x +1) transformation.


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