scholarly journals Machine Learning and End-to-End Deep Learning for the Detection of Chronic Heart Failure From Heart Sounds

IEEE Access ◽  
2020 ◽  
Vol 8 ◽  
pp. 20313-20324 ◽  
Author(s):  
Martin Gjoreski ◽  
Anton Gradisek ◽  
Borut Budna ◽  
Matjaz Gams ◽  
Gregor Poglajen
Keyword(s):  
Machine Learning ◽  
Heart Failure ◽  
Deep Learning ◽  
Chronic Heart Failure ◽  
Heart Sounds ◽  
End To End

scholarly journals Accelerating End-to-End Deep Learning for Particle Reconstruction using CMS open data

2021 ◽  
Vol 251 ◽  
pp. 03057
Author(s):  
Michael Andrews ◽  
Bjorn Burkle ◽  
Shravan Chaudhari ◽  
Davide Di Croce ◽  
Sergei Gleyzer ◽  
...  
Keyword(s):  
Machine Learning ◽  
Deep Learning ◽  
Top Quark ◽  
Learning Algorithms ◽  
Open Data ◽  
High Energy ◽  
Machine Learning Algorithms ◽  
Multiple Gpus ◽  
Event Identification ◽  
End To End

Machine learning algorithms are gaining ground in high energy physics for applications in particle and event identification, physics analysis, detector reconstruction, simulation and trigger. Currently, most data-analysis tasks at LHC experiments benefit from the use of machine learning. Incorporating these computational tools in the experimental framework presents new challenges. This paper reports on the implementation of the end-to-end deep learning with the CMS software framework and the scaling of the end-to-end deep learning with multiple GPUs. The end-to-end deep learning technique combines deep learning algorithms and low-level detector representation for particle and event identification. We demonstrate the end-to-end implementation on a top quark benchmark and perform studies with various hardware architectures including single and multiple GPUs and Google TPU.

scholarly journals Machine Learning and End-to-End Deep Learning for Monitoring Driver Distractions From Physiological and Visual Signals

IEEE Access ◽  
2020 ◽  
Vol 8 ◽  
pp. 70590-70603 ◽  
Author(s):  
Martin Gjoreski ◽  
Matja Z Gams ◽  
Mitja Lustrek ◽  
Pelin Genc ◽  
Jens-U. Garbas ◽  
...  
Keyword(s):  
Machine Learning ◽  
Deep Learning ◽  
Visual Signals ◽  
End To End ◽  
Driver Distractions

scholarly journals Deep-ACTINet: End-to-End Deep Learning Architecture for Automatic Sleep-Wake Detection Using Wrist Actigraphy

Electronics ◽  
2019 ◽  
Vol 8 (12) ◽  
pp. 1461 ◽  
Author(s):  
Taeheum Cho ◽  
Unang Sunarya ◽  
Minsoo Yeo ◽  
Bosun Hwang ◽  
Yong Seo Koo ◽  
...  
Keyword(s):  
Machine Learning ◽  
Deep Learning ◽  
Sleep Disorders ◽  
Learning Algorithms ◽  
Machine Learning Algorithms ◽  
Feature Engineering ◽  
Model Based ◽  
Wrist Actigraphy ◽  
End To End ◽  
Wake Detection

Sleep scoring is the first step for diagnosing sleep disorders. A variety of chronic diseases related to sleep disorders could be identified using sleep-state estimation. This paper presents an end-to-end deep learning architecture using wrist actigraphy, called Deep-ACTINet, for automatic sleep-wake detection using only noise canceled raw activity signals recorded during sleep and without a feature engineering method. As a benchmark test, the proposed Deep-ACTINet is compared with two conventional fixed model based sleep-wake scoring algorithms and four feature engineering based machine learning algorithms. The datasets were recorded from 10 subjects using three-axis accelerometer wristband sensors for eight hours in bed. The sleep recordings were analyzed using Deep-ACTINet and conventional approaches, and the suggested end-to-end deep learning model gained the highest accuracy of 89.65%, recall of 92.99%, and precision of 92.09% on average. These values were approximately 4.74% and 4.05% higher than those for the traditional model based and feature based machine learning algorithms, respectively. In addition, the neuron outputs of Deep-ACTINet contained the most significant information for separating the asleep and awake states, which was demonstrated by their high correlations with conventional significant features. Deep-ACTINet was designed to be a general model and thus has the potential to replace current actigraphy algorithms equipped in wristband wearable devices.

scholarly journals The Use of Synthetic Electronic Health Record Data and Deep Learning to Improve Timing of High-Risk Heart Failure Surgical Intervention by Predicting Proximity to Catastrophic Decompensation

2020 ◽  
Vol 2 ◽  
Author(s):  
Aixia Guo ◽  
Randi E. Foraker ◽  
Robert M. MacGregor ◽  
Faraz M. Masood ◽  
Brian P. Cupps ◽  
...  
Keyword(s):  
Machine Learning ◽  
Heart Failure ◽  
Deep Learning ◽  
High Risk ◽  
Electronic Health Record ◽  
Surgical Intervention ◽  
Health Record ◽  
Predictive Capability ◽  
Clinical Tool ◽  
Electronic Health

Objective: Although many clinical metrics are associated with proximity to decompensation in heart failure (HF), none are individually accurate enough to risk-stratify HF patients on a patient-by-patient basis. The dire consequences of this inaccuracy in risk stratification have profoundly lowered the clinical threshold for application of high-risk surgical intervention, such as ventricular assist device placement. Machine learning can detect non-intuitive classifier patterns that allow for innovative combination of patient feature predictive capability. A machine learning-based clinical tool to identify proximity to catastrophic HF deterioration on a patient-specific basis would enable more efficient direction of high-risk surgical intervention to those patients who have the most to gain from it, while sparing others. Synthetic electronic health record (EHR) data are statistically indistinguishable from the original protected health information, and can be analyzed as if they were original data but without any privacy concerns. We demonstrate that synthetic EHR data can be easily accessed and analyzed and are amenable to machine learning analyses.Methods: We developed synthetic data from EHR data of 26,575 HF patients admitted to a single institution during the decade ending on 12/31/2018. Twenty-seven clinically-relevant features were synthesized and utilized in supervised deep learning and machine learning algorithms (i.e., deep neural networks [DNN], random forest [RF], and logistic regression [LR]) to explore their ability to predict 1-year mortality by five-fold cross validation methods. We conducted analyses leveraging features from prior to/at and after/at the time of HF diagnosis.Results: The area under the receiver operating curve (AUC) was used to evaluate the performance of the three models: the mean AUC was 0.80 for DNN, 0.72 for RF, and 0.74 for LR. Age, creatinine, body mass index, and blood pressure levels were especially important features in predicting death within 1-year among HF patients.Conclusions: Machine learning models have considerable potential to improve accuracy in mortality prediction, such that high-risk surgical intervention can be applied only in those patients who stand to benefit from it. Access to EHR-based synthetic data derivatives eliminates risk of exposure of EHR data, speeds time-to-insight, and facilitates data sharing. As more clinical, imaging, and contractile features with proven predictive capability are added to these models, the development of a clinical tool to assist in timing of intervention in surgical candidates may be possible.

scholarly journals Training confounder-free deep learning models for medical applications

2020 ◽  
Vol 11 (1) ◽  
Author(s):  
Qingyu Zhao ◽  
Ehsan Adeli ◽  
Kilian M. Pohl
Keyword(s):  
Machine Learning ◽  
Deep Learning ◽  
Bone Age ◽  
Magnetic Resonance Images ◽  
Data Sets ◽  
Large Set ◽  
Learning Models ◽  
End To End ◽  
The Impact ◽  
The Relationship

AbstractThe presence of confounding effects (or biases) is one of the most critical challenges in using deep learning to advance discovery in medical imaging studies. Confounders affect the relationship between input data (e.g., brain MRIs) and output variables (e.g., diagnosis). Improper modeling of those relationships often results in spurious and biased associations. Traditional machine learning and statistical models minimize the impact of confounders by, for example, matching data sets, stratifying data, or residualizing imaging measurements. Alternative strategies are needed for state-of-the-art deep learning models that use end-to-end training to automatically extract informative features from large set of images. In this article, we introduce an end-to-end approach for deriving features invariant to confounding factors while accounting for intrinsic correlations between the confounder(s) and prediction outcome. The method does so by exploiting concepts from traditional statistical methods and recent fair machine learning schemes. We evaluate the method on predicting the diagnosis of HIV solely from Magnetic Resonance Images (MRIs), identifying morphological sex differences in adolescence from those of the National Consortium on Alcohol and Neurodevelopment in Adolescence (NCANDA), and determining the bone age from X-ray images of children. The results show that our method can accurately predict while reducing biases associated with confounders. The code is available at https://github.com/qingyuzhao/br-net.

scholarly journals An End-to-End Grasping Stability Prediction Network for Multiple Sensors

2020 ◽  
Vol 10 (6) ◽  
pp. 1997
Author(s):  
Xin Shu ◽  
Chang Liu ◽  
Tong Li
Keyword(s):  
Neural Network ◽  
Machine Learning ◽  
Deep Learning ◽  
Prediction Accuracy ◽  
The Other ◽  
Stability Prediction ◽  
Multiple Sensors ◽  
End To End ◽  
The One ◽  
Internal Relationships

As we all know, the output of the tactile sensing array on the gripper can be used to predict grasping stability. Some methods utilize traditional tactile features to make the decision and some advanced methods use machine learning or deep learning ways to build a prediction model. While these methods are all limited to the specific sensing array and have two common disadvantages. On the one hand, these models cannot perform well on different sensors. On the other hand, they do not have the ability of inferencing on multiple sensors in an end-to-end manner. Thus, we aim to find the internal relationships among different sensors and inference the grasping stability of multiple sensors in an end-to-end way. In this paper, we propose the MM-CNN (mask multi-head convolutional neural network), which can be utilized to predict the grasping stability on the output of multiple sensors with the weight sharing mechanism. We train this model and evaluate it on our own collected datasets. This model achieves 99.49% and 94.25% prediction accuracy on two different sensing arrays, separately. In addition, we show that our proposed structure is also available for other CNN backbones and can be easily integrated.

scholarly journals Using self-supervised feature learning to improve the use of pulse oximeter signals to predict paediatric hospitalization

2021 ◽  
Vol 6 ◽  
pp. 248
Author(s):  
Paul Mwaniki ◽  
Timothy Kamanu ◽  
Samuel Akech ◽  
Dustin Dunsmuir ◽  
J. Mark Ansermino ◽  
...  
Keyword(s):  
Machine Learning ◽  
Logistic Regression ◽  
Deep Learning ◽  
Pulse Oximeter ◽  
Regression Models ◽  
Data Sets ◽  
Learning Models ◽  
Data Set ◽  
Logistic Regression Models ◽  
End To End

Background: The success of many machine learning applications depends on knowledge about the relationship between the input data and the task of interest (output), hindering the application of machine learning to novel tasks. End-to-end deep learning, which does not require intermediate feature engineering, has been recommended to overcome this challenge but end-to-end deep learning models require large labelled training data sets often unavailable in many medical applications. In this study, we trained machine learning models to predict paediatric hospitalization given raw photoplethysmography (PPG) signals obtained from a pulse oximeter. We trained self-supervised learning (SSL) for automatic feature extraction from PPG signals and assessed the utility of SSL in initializing end-to-end deep learning models trained on a small labelled data set with the aim of predicting paediatric hospitalization.Methods: We compared logistic regression models fitted using features extracted using SSL with end-to-end deep learning models initialized either randomly or using weights from the SSL model. We also compared the performance of SSL models trained on labelled data alone (n=1,031) with SSL trained using both labelled and unlabelled signals (n=7,578). Results: The SSL model trained on both labelled and unlabelled PPG signals produced features that were more predictive of hospitalization compared to the SSL model trained on labelled PPG only (AUC of logistic regression model: 0.78 vs 0.74). The end-to-end deep learning model had an AUC of 0.80 when initialized using the SSL model trained on all PPG signals, 0.77 when initialized using SSL trained on labelled data only, and 0.73 when initialized randomly. Conclusions: This study shows that SSL can improve the classification of PPG signals by either extracting features required by logistic regression models or initializing end-to-end deep learning models. Furthermore, SSL can leverage larger unlabelled data sets to improve performance of models fitted using small labelled data sets.

scholarly journals Prediction of long-term hospitalisation and all-cause mortality in patients with chronic heart failure on Dutch claims data: a machine learning approach

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Onno P. van der Galiën ◽  
René C. Hoekstra ◽  
Muhammed T. Gürgöze ◽  
Olivier C. Manintveld ◽  
Mark R. van den Bunt ◽  
...  
Keyword(s):  
Machine Learning ◽  
Heart Failure ◽  
Logistic Regression ◽  
Chronic Heart Failure ◽  
Random Forest ◽  
Elastic Net ◽  
Claims Database ◽  
All Cause Mortality ◽  
Health Insurance Claims

Abstract Background Accurately predicting which patients with chronic heart failure (CHF) are particularly vulnerable for adverse outcomes is of crucial importance to support clinical decision making. The goal of the current study was to examine the predictive value on long term heart failure (HF) hospitalisation and all-cause mortality in CHF patients, by exploring and exploiting machine learning (ML) and traditional statistical techniques on a Dutch health insurance claims database. Methods Our study population consisted of 25,776 patients with a CHF diagnosis code between 2012 and 2014 and one year and three years follow-up HF hospitalisation (1446 and 3220 patients respectively) and all-cause mortality (2434 and 7882 patients respectively) were measured from 2015 to 2018. The area under the receiver operating characteristic (ROC) curve (AUC) was calculated after modelling the data using Logistic Regression, Random Forest, Elastic Net regression and Neural Networks. Results AUC rates ranged from 0.710 to 0.732 for 1-year HF hospitalisation, 0.705–0.733 for 3-years HF hospitalisation, 0.765–0.787 for 1-year mortality and 0.764–0.791 for 3-years mortality. Elastic Net performed best for all endpoints. Differences between techniques were small and only statistically significant between Elastic Net and Logistic Regression compared with Random Forest for 3-years HF hospitalisation. Conclusion In this study based on a health insurance claims database we found clear predictive value for predicting long-term HF hospitalisation and mortality of CHF patients by using ML techniques compared to traditional statistics.

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