Identification of a 16SrIX‐B phytoplasma strain associated with Daphne mucronata phyllody in Iran

2021 ◽  
Author(s):  
Ghobad Babaei ◽  
Seyyed Alireza Esmaeilzadeh‐Hosseini ◽  
Hamzeh Ali Shirmardi ◽  
Assunta Bertaccini
Author(s):  
Kiran Kirdat ◽  
Bhavesh Tiwarekar ◽  
Vipool Thorat ◽  
Shivaji Sathe ◽  
Yogesh Shouche ◽  
...  

Sugarcane Grassy Shoot (SCGS) disease is known to be related to Rice Yellow Dwarf (RYD) phytoplasmas (16SrXI-B group) which are found predominantly in sugarcane growing areas of the Indian subcontinent and South-East Asia. The 16S rRNA gene sequences of SCGS phytoplasma strains belonging to the 16SrXI-B group share 98.07 % similarity with ‘Ca. Phytoplasma cynodontis’ strain BGWL-C1 followed by 97.65 % similarity with ‘Ca. P. oryzae’ strain RYD-J. Being placed distinctly away from both the phylogenetically related species, the taxonomic identity of SCGS phytoplasma is unclear and confusing. We attempted to resolve the phylogenetic positions of SCGS phytoplasma based on the phylogenetic analysis of 16S rRNA gene (>1500 bp), nine housekeeping genes (>3500 aa), core genome phylogeny (>10 000 aa) and OGRI values. The draft genome sequences of SCGS phytoplasma (strain SCGS) and Bermuda Grass White leaf (BGWL) phytoplasma (strain LW01), closely related to ‘Ca. P. cynodontis’, were obtained. The SCGS genome was comprised of 29 scaffolds corresponding to 505 173 bp while LW01 assembly contained 21 scaffolds corresponding to 483 935 bp with the fold coverages over 330× and completeness over 90 % for both the genomes. The G+C content of SCGS was 19.86 % while that of LW01 was 20.46 %. The orthoANI values for the strain SCGS against strains LW01 was 79.42 %, and dDDH values were 22. Overall analysis reveals that SCGS phytoplasma forms a distant clade in RYD group of phytoplasmas. Based on phylogenetic analyses and OGRI values obtained from the genome sequences, a novel taxon ‘Candidatus Phytoplasma sacchari’ is proposed.


2015 ◽  
Vol 65 (Pt_8) ◽  
pp. 2761-2765 ◽  
Author(s):  
Daniela Flôres ◽  
Ana Paula de Oliveira Amaral Mello ◽  
Thays Benites Camargo Pereira ◽  
Jorge Alberto Marques Rezende ◽  
Ivan Paulo Bedendo

Erigeron sp. plants showing symptoms of witches' broom and stunting were found near orchards of passion fruit in São Paulo state, Brazil. These symptoms were indicative of infection by phytoplasmas. Thus, the aim of this study was to detect and identify possible phytoplasmas associated with diseased plants. Total DNA was extracted from symptomatic and asymptomatic plants and used in nested PCR conducted with the primer pairs P1/Tint and R16F2n/16R2. Amplification of genomic fragments of 1.2 kb from the 16S rRNA gene confirmed the presence of phytoplasma in all symptomatic samples. The sequence identity scores between the 16S rRNA gene of the phytoplasma strain identified in the current study and those of previously reported ‘Candidatus Phytoplasma fraxini’-related strains ranged from 98 % to 99 % indicating the phytoplasma to be a strain affiliated with ‘Candidatus Phytoplasma fraxini’. The results from a phylogenetic analysis and virtual RFLP analysis of the 16S rRNA gene sequence with 17 restriction enzymes revealed that the phytoplasma strain belongs to the ash yellows phytoplasma group (16SrVII); the similarity coefficient of RFLP patterns further suggested that the phytoplasma represents a novel subgroup, designated 16SrVII-D. The representative of this new subgroup was named EboWB phytoplasma (Erigeron bonariensis Witches' Broom).


2004 ◽  
Vol 32 (03) ◽  
pp. 369-376 ◽  
Author(s):  
M. Mianabadi ◽  
R. Yazdanparast

Alteration of the cell surface glycoproteins of cancerous cells correlate with malignancy potential. To evaluate the mediation of membrane glycoproteins in wehi-164 cancerous cells, under the effect of D. mucronata crude extract and one of its purified active components, gnidilatimonoein, their attachment to fibronectin-coated wells were investigated. The plant extract, 27 μl/ml (equivalent to 0.54 mg/of plant leaves powder per ml of culture medium), as well as gnidilatimonoein (0.94 μM), were capable of quenching by 58% and 64%, respectively, the attachment of wehi-164 cells to fibronectin-coated wells (4 μg/ml). In addition to alteration of cell adhesive properties, the morphology of the treated cells were significantly changed upon treatment with the non-toxic dose of the plant extract or gnidilatimonoein. While the untreated cells have polygonal shapes, the treated cells had spherical shapes.


2015 ◽  
Vol 5 (1s) ◽  
pp. S33 ◽  
Author(s):  
Samanta Paltrinieri ◽  
Nicoletta Contaldo ◽  
Mogens Nicolaisen ◽  
Assunta Bertaccini
Keyword(s):  

2012 ◽  
Vol 135 (2) ◽  
pp. 371-381 ◽  
Author(s):  
Pascal Salar ◽  
Claire Charenton ◽  
Xavier Foissac ◽  
Sylvie Malembic-Maher

Plant Disease ◽  
2007 ◽  
Vol 91 (10) ◽  
pp. 1364-1364 ◽  
Author(s):  
W. Wei ◽  
H. Jiang ◽  
Y. Yang ◽  
Y. Wang ◽  
R. E. Davis ◽  
...  

Jujube (Zizyphus jujuba Mill.) is a deciduous tree that is native to northern Africa and Syria. Because of its tolerance to a broad range of climatic conditions, jujube has attained a wide natural distribution from southeastern Europe to eastern Asia (3). Jujube has a long history of cultivation, especially in Asia, for its valuable medicinal properties, strong wood, and nutritious fruits. Jujube trees are susceptible to phytoplasma infections and develop jujube witches'-broom (JWB) disease. To date, JWB diseases have been reported in Korea, Japan, and central China (1,4). In this communication, we describe a new phytoplasma strain associated with the first observation of JWB disease in northeastern China. In the summer of 2006, six jujube trees exhibiting pronounced witches'-broom symptoms were observed in suburban Dalian, Liaoning Province. The trees developed dense clusters of highly proliferating branches with shortened internodes. Leaves on the affected branches were chlorotic and significantly reduced in size. A DNA segment characteristic of phytoplasma rRNA partial operons was amplified from DNA samples extracted from leaves of all diseased trees in polymerase chain reactions (PCR) using phytoplasma-universal primer pair P1/P7 (2). No PCR product was obtained from DNA samples extracted from two symptomless jujube trees in the same region. The PCR-amplified DNA segment, spanning a near full-length 16S rRNA gene, a 16S-23S rRNA intergenic spacer, a tRNA-Ile gene, and a partial 23S rRNA gene was cloned and sequenced to achieve 4× coverage per base position in sequencing both strands (GenBank Accession No. EF661852). Results from analysis of the sequence data indicated that the six jujube trees were infected by a phytoplasma of elm yellows group (16SrV), to which other reported JWB phytoplasma strains belong. However, the JWB phytoplasma strain identified in the current study, hereby designated as JWB-DL, displayed sequence variations within the partial rRNA operon compared with those of other JWB strains (GenBank Accession Nos. AY072722, AF305240, and AY197661), indicating that JWB-DL is a distinct strain. To further characterize the JWB-DL phytoplasma, a genomic segment covering full-length ribosomal protein genes rplV and rpsC was PCR-amplified using primer pair rp(V)F2A/rpR1 (2), cloned, and sequenced (GenBank Accession No. EF661581). The nucleotide sequence of the JWB-DL phytoplasma rplV-rpsC locus is identical to that of hemp fiber witches'-broom phytoplasma (GenBank Accession No. EF029093) rather than to those of JWB phytoplasma strains described previously. To our knowledge, this is the first report of a JWB disease in northeastern China, and JWB-DL represents a new, distinct ‘Candidatus Phytoplasma ziziphi’-related strain. References: (1) H.-Y. Jung et al. Int. J. Syst. Evol. Microbiol. 53:1037, 2003. (2) I.-M. Lee et al. Int. J. Syst. Evol. Microbiol. 54:337, 2004. (3) W. H. Outlaw et al. Econ. Bot. 56:198, 2002. (4) J. B. Tian et al. Hortic. Sci 35:1274, 2000.


2017 ◽  
pp. 132-143
Author(s):  
AZIZ ULLAH

This study was carried out to study Anti-diabetic effect of the plant Daphne mucronataextract in alloxan induced diabetic rabbits. To the first fifteen healthy rabbits taken and divided them into five groups as each group contains three numbers of rabbits. Group one kept in normal condition means no induction or treatment observed. Group second was given the diabetic control dose in quantity (12mg/kg). Group three also treated with the dose rate (125mg/kg) the D. Mucronata(methanol) extract. Similarly group no four was treat with the subject extract in the concentration of (225mg/kg). And the last fifth group of rabbits had the dosage of extract (325mg/kg). This mechanism of entrance was orally ingestion and the treatment duration was eight hours, after each of the next two hours from the start the blood samples were collected, serum separated and the glucose level determined by the method known by Kit method. After all the observations we reached to an impressive conclusion that the D. Mucronata(methanol) extract has significant potential to reduce blood glucose level and also recognized to be effective to reduce the blood SGPT enzyme level, so it can be suggested that this plant has such antidiabetic and SGPT reduction effect.


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