scholarly journals Draft Genome Sequences of 1,183 Salmonella Strains from the 100K Pathogen Genome Project

2017 ◽  
Vol 5 (28) ◽  
Author(s):  
Nguyet Kong ◽  
Matthew Davis ◽  
Narine Arabyan ◽  
Bihua C. Huang ◽  
Allison M. Weis ◽  
...  
Keyword(s):  
Human Health ◽  
Global Economy ◽  
Draft Genome ◽  
Genome Project ◽  
Genomic Diversity ◽  
Genome Sequences ◽  
Substantial Impact ◽  
The Public ◽  
Common Food ◽  
Pathogen Genome

ABSTRACT Salmonella is a common food-associated bacterium that has substantial impact on worldwide human health and the global economy. This is the public release of 1,183 Salmonella draft genome sequences as part of the 100K Pathogen Genome Project. These isolates represent global genomic diversity in the Salmonella genus.

scholarly journals 100K Pathogen Genome Project: 306 Listeria Draft Genome Sequences for Food Safety and Public Health

2017 ◽  
Vol 5 (6) ◽  
Author(s):  
Poyin Chen ◽  
Nguyet Kong ◽  
Bihua Huang ◽  
Kao Thao ◽  
Whitney Ng ◽  
...  
Keyword(s):  
Public Health ◽  
Listeria Monocytogenes ◽  
Food Safety ◽  
Draft Genome ◽  
Genome Project ◽  
Genomic Diversity ◽  
Genome Sequences ◽  
Content Type ◽  
Pathogen Genome

ABSTRACT Listeria monocytogenes is a food-associated bacterium that is responsible for food-related illnesses worldwide. This is the initial public release of 306 L. monocytogenes genome sequences as part of the 100K Pathogen Genome Project. These isolates represent global genomic diversity in L. monocytogenes.

scholarly journals Draft Genome Sequences of Campylobacter jejuni Strains That Cause Abortion in Livestock: TABLE 1 

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Allison M. Weis ◽  
Kristin A. Clothier ◽  
Bihua C. Huang ◽  
Nguyet Kong ◽  
Bart C. Weimer
Keyword(s):  
Campylobacter Jejuni ◽  
Draft Genome ◽  
Genome Project ◽  
University Of California ◽  
Intestinal Bacterium ◽  
Genome Sequences ◽  
The Public ◽  
The University ◽  
Pathogen Genome ◽  
Clinical Cases

Campylobacter jejuni is an intestinal bacterium that can cause abortion in livestock. This publication announces the public release of 15 Campylobacter jejuni genome sequences from isolates linked to abortion in livestock. These isolates are part of the 100K Pathogen Genome Project and are from clinical cases at the University of California (UC) Davis.

scholarly journals Shigella Draft Genome Sequences: Resources for Food Safety and Public Health

2017 ◽  
Vol 5 (16) ◽  
Author(s):  
Allison M. Weis ◽  
Brent Gilpin ◽  
Bihua C. Huang ◽  
Nguyet Kong ◽  
Poyin Chen ◽  
...  
Keyword(s):  
Public Health ◽  
Food Safety ◽  
Reactive Arthritis ◽  
Nonhuman Primates ◽  
Draft Genome ◽  
Foodborne Pathogen ◽  
Genome Project ◽  
Genome Sequences ◽  
Pathogen Genome

ABSTRACT Shigella is a major foodborne pathogen that infects humans and nonhuman primates and is the major cause of dysentery and reactive arthritis worldwide. This is the initial public release of 16 Shigella genome sequences from four species sequenced as part of the 100K Pathogen Genome Project.

scholarly journals Large-Scale Release of Campylobacter Draft Genomes: Resources for Food Safety and Public Health from the 100K Pathogen Genome Project

2017 ◽  
Vol 5 (1) ◽  
Author(s):  
Allison M. Weis ◽  
Bihua C. Huang ◽  
Dylan B. Storey ◽  
Nguyet Kong ◽  
Poyin Chen ◽  
...  
Keyword(s):  
Public Health ◽  
Food Safety ◽  
Food Supply ◽  
Large Scale ◽  
Genome Project ◽  
Foodborne Illness ◽  
Genomic Diversity ◽  
Genome Sequences ◽  
Pathogen Genome

ABSTRACT Campylobacter is a food-associated bacterium and a leading cause of foodborne illness worldwide, being associated with poultry in the food supply. This is the initial public release of 202 Campylobacter genome sequences as part of the 100K Pathogen Genome Project. These isolates represent global genomic diversity in the Campylobacter genus.

scholarly journals Species-Wide Collection of Escherichia coli Isolates for Examination of Genomic Diversity

2017 ◽  
Vol 5 (50) ◽  
Author(s):  
Jayanthi Gangiredla ◽  
Mark K. Mammel ◽  
Tammy J. Barnaba ◽  
Carmen Tartera ◽  
Solomon T. Gebru ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Human Health ◽  
Potential Risk ◽  
Phylogenetic Relationships ◽  
Genomic Diversity ◽  
Genome Sequences ◽  
Content Type ◽  
E Coli

ABSTRACT Pathogenic and nonpathogenic Escherichia coli strains present a vast genomic diversity. We report the genome sequences of 2,244 E. coli isolates from multiple animal and environmental sources. Their phylogenetic relationships and potential risk to human health were examined.

scholarly journals Draft Genome Sequences of Five Diverse Klebsiella Species Isolates from Intensive Care Unit Patients

2020 ◽  
Vol 9 (47) ◽  
Author(s):  
Tracy H. Hazen ◽  
Stephanie Hitchcock ◽  
Lyndsay M. O’Hara ◽  
Jane M. Michalski ◽  
J. Kristie Johnson ◽  
...  
Keyword(s):  
Intensive Care Unit ◽  
Intensive Care ◽  
Draft Genome ◽  
Genomic Diversity ◽  
Genome Sequences ◽  
Klebsiella Species ◽  
Geographically Distributed ◽  
Hospital Acquired

ABSTRACT We have examined the draft genomes of five isolates from two different Klebsiella species obtained from intensive care unit patients at two geographically distributed hospitals to examine the genomic diversity of hospital-acquired organisms in this understudied population.

scholarly journals Draft Genome Sequences of 40 Pathogenic Leptospira Strains Isolated from Cattle in Uruguay

2019 ◽  
Vol 8 (47) ◽  
Author(s):  
Cecilia Nieves ◽  
Ignacio Ferrés ◽  
Florencia Díaz-Viraqué ◽  
Alejandro Buschiazzo ◽  
Leticia Zarantonelli ◽  
...  
Keyword(s):  
Human Health ◽  
Draft Genome ◽  
Whole Genome ◽  
Infected Cattle ◽  
Genome Sequences ◽  
Pathogenic Leptospira ◽  
Content Type ◽  
Zoonotic Infections

Pathogenic Leptospira species represent a major concern for livestock but also for human health, as they cause zoonotic infections. Forty strains representing L. interrogans, L. borgpetersenii, and L. noguchii were isolated from naturally infected cattle in Uruguay. Here, we report the whole-genome sequences for these strains.

scholarly journals Draft Genome Sequences of 64 Salmonella enterica Serotype Enteritidis Isolates Obtained from Wild Mice

2017 ◽  
Vol 5 (36) ◽  
Author(s):  
Jean Guard ◽  
Guojie Cao ◽  
George J. Kastanis ◽  
Sherrill Davison ◽  
Michael McClelland ◽  
...  
Keyword(s):  
Salmonella Enterica ◽  
Draft Genome ◽  
Foodborne Pathogen ◽  
Genomic Diversity ◽  
Genome Sequences ◽  
Wild Mice ◽  
Content Type ◽  
Baseline Information ◽  
Foodborne Outbreaks ◽  
Global Concern

ABSTRACT Salmonella enterica serotype Enteritidis is a foodborne pathogen of global concern, because it is frequently isolated from foods and patients. Draft genome sequences are reported here for 64 S. Enteritidis strains isolated from the intestines and spleens of mice caught live on chicken farms in the U.S. Northeast. The availability of these genomes provides baseline information on the genomic diversity of S. Enteritidis during the 1990s, when foodborne outbreaks traced to internal contamination of eggs were prevalent.

scholarly journals Draft Genome Sequences of Clinical and Environmental Isolates of Aspergillus tamarii from Colombia

2020 ◽  
Vol 9 (14) ◽  
Author(s):  
Oscar M. Gómez ◽  
Carmen G. Freyle ◽  
Susana Torres ◽  
Álvaro L. Rúa ◽  
Diana P. Tamayo ◽  
...  
Keyword(s):  
Human Health ◽  
Infected Patient ◽  
Draft Genome ◽  
The Other ◽  
Pathogenic Species ◽  
Environmental Isolates ◽  
Genome Sequences ◽  
Aspergillus Tamarii ◽  
Content Type

Aspergillus is a very diverse genus of fungi that are common in the environment and can affect human health. Here, we report the draft genome sequences of two Colombian isolates of Aspergillus tamarii, an emerging pathogenic species. One isolate was obtained from an infected patient and the other from the environment in a hospital.

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