scholarly journals Complete Genome Sequence of a New Firmicutes Species Isolated from Anaerobic Biomass Hydrolysis

2017 ◽  
Vol 5 (40) ◽  
Author(s):  
Christian Abendroth ◽  
Sarah Hahnke ◽  
Francisco M. Codoñer ◽  
Michael Klocke ◽  
Olaf Luschnig ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Bacterial Isolate ◽  
Plant Biomass ◽  
Biomass Degradation ◽  
Biomass Hydrolysis ◽  
Two Stage ◽  
Plant Biomass Degradation ◽  
Anaerobic Biomass

ABSTRACT A new Firmicutes isolate, strain HV4-6-A5C, was obtained from the hydrolysis stage of a mesophilic and anaerobic two-stage lab-scale leach-bed system for biomethanation of fresh grass. It is assumed that the bacterial isolate contributes to plant biomass degradation. Here, we report a draft annotated genome sequence of this organism.

scholarly journals Complete Genome Sequence of a New Bacteroidaceae Bacterium Isolated from Anaerobic Biomass Digestion

2019 ◽  
Vol 8 (46) ◽  
Author(s):  
Sarah Hahnke ◽  
Christian Abendroth ◽  
Javier Pascual ◽  
Thomas Langer ◽  
Francisco M. Codoñer ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Bacterial Strain ◽  
Complete Genome ◽  
New Genus ◽  
Two Stage ◽  
Content Type ◽  
The Family ◽  
Biogas Reactor ◽  
Anaerobic Biomass

Here, we present the genome sequence and annotation of HV4-6-C5C, a bacterial strain isolated from a mesophilic two-stage laboratory-scale leach bed biogas reactor system. Strain HV4-6-C5C may represent a new genus of the family Bacteroidaceae and may have a key role in acidogenesis and acetogenesis steps during anaerobic biomass digestion.

scholarly journals Complete Genome Sequence of the Cellulolytic Thermophile Caldicellulosiruptor obsidiansis OB47T

2010 ◽  
Vol 192 (22) ◽  
pp. 6099-6100 ◽  
Author(s):  
James G. Elkins ◽  
Adriane Lochner ◽  
Scott D. Hamilton-Brehm ◽  
Karen Walston Davenport ◽  
Mircea Podar ◽  
...  
Keyword(s):  
Lignocellulosic Biomass ◽  
High Temperatures ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Anaerobic Bacterium ◽  
Carbohydrate Active Enzymes ◽  
Biomass Hydrolysis ◽  
Insight Into

ABSTRACT Caldicellulosiruptor obsidiansis OB47T (ATCC BAA-2073, JCM 16842) is an extremely thermophilic, anaerobic bacterium capable of hydrolyzing plant-derived polymers through the expression of multidomain/multifunctional hydrolases. The complete genome sequence reveals a diverse set of carbohydrate-active enzymes and provides further insight into lignocellulosic biomass hydrolysis at high temperatures.

scholarly journals Genomic and physiological analyses reveal that extremely thermophilicCaldicellulosiruptor changbaiensisdeploys unique cellulose attachment mechanisms

2019 ◽  
Author(s):  
Asma M.A.M. Khan ◽  
Carl Mendoza ◽  
Valerie J. Hauk ◽  
Sara E. Blumer-Schuette
Keyword(s):  
Genome Sequence ◽  
Growth Kinetics ◽  
Plant Biomass ◽  
Cell Attachment ◽  
The Other ◽  
Biomass Degradation ◽  
Plant Biomass Degradation ◽  
Caldicellulosiruptor Bescii ◽  
New Genes ◽  
Multifunctional Enzymes

ABSTRACTThe genusCaldicellulosiruptorare extremely thermophilic, heterotrophic anaerobes that degrade plant biomass using modular, multifunctional enzymes. Prior pangenome analyses determined that this genus is genetically diverse, with the current pangenome remaining open, meaning that new genes are expected with each additional genome sequence added. Given the high biodiversity observed among the genusCaldicellulosiruptor, we have sequenced and added a 14thspecies,Caldicellulosiruptor changbaiensis, to the pangenome. The pangenome now includes 3,791 ortholog clusters, 120 of which are unique toC. changbaiensisand may be involved in plant biomass degradation. Comparisons betweenC. changbaiensisandCaldicellulosiruptor besciion the basis of growth kinetics, cellulose solubilization and cell attachment to polysaccharides highlighted physiological differences between the two species which are supported by their respective gene inventories. Most significantly, these comparisons indicated thatC. changbaiensispossesses unique cellulose attachment mechanisms not observed among the other strongly cellulolytic members of the genusCaldicellulosiruptor.

scholarly journals Complete Genome Sequence of Thermoanaerobacterium sp. Strain RBIITD, a Butyrate- and Butanol-Producing Thermophile

2018 ◽  
Vol 6 (2) ◽  
Author(s):  
Ranjita Biswas ◽  
Marcel Huntemann ◽  
Alicia Clum ◽  
Manoj Pillay ◽  
Krishnaveni Palaniappan ◽  
...  
Keyword(s):  
Growth Medium ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Plant Biomass ◽  
Gc Content ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Fermentation Product ◽  
Anaerobic Chamber

ABSTRACT Thermoanaerobacterium sp. strain RBIITD was isolated from contaminated rich growth medium at 55°C in an anaerobic chamber. It primarily produces butyrate as a fermentation product from plant biomass-derived sugars. The whole-genome sequence of the strain is 3.4 Mbp, with 3,444 genes and 32.48% GC content.

scholarly journals Genome sequence of Rhizomucor pusillus FCH 5.7, a thermophilic zygomycete involved in plant biomass degradation harbouring putative GH9 endoglucanases

2018 ◽  
Vol 20 ◽  
pp. e00279 ◽  
Author(s):  
Silvia Hüttner ◽  
Zoraide Granchi ◽  
Thanh Thuy Nguyen ◽  
Sake van Pelt ◽  
Johan Larsbrink ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Plant Biomass ◽  
Biomass Degradation ◽  
Plant Biomass Degradation ◽  
Rhizomucor Pusillus

scholarly journals Complete Genome Sequence of Thalassotalea euphylliae Strain H2

2019 ◽  
Vol 8 (4) ◽  
Author(s):  
Stephen Summers ◽  
Marnie L. Freckelton ◽  
Brian T. Nedved ◽  
Scott A. Rice ◽  
Michael G. Hadfield
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Bacterial Isolate ◽  
Short Read ◽  
Content Type ◽  
Montipora Capitata ◽  
Long Reads

A bacterial isolate of Thalassotalea euphylliae H2 was collected from the coral Montipora capitata. MinION long reads were employed for scaffolding and complemented with short-read MiSeq sequences to permit complete genome assembly.

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