scholarly journals Whole-Genome Sequence of Mycobacterium bovis W-1171, Isolated from the Laryngopharyngeal Lymph Node of a Wild Boar in South Korea

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Narae Kim ◽  
Yunho Jang ◽  
So-young Park ◽  
Woong-seog Song ◽  
Jong-Taek Kim ◽  
...  
Keyword(s):  
Lymph Node ◽  
South Korea ◽  
Wild Boar ◽  
Mycobacterium Bovis ◽  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Protein Coding ◽  
Protein Coding Genes ◽  
Free Ranging

Mycobacterium bovis W-1171 was isolated from a wild boar living in a free-ranging field in Gyeonggido, South Korea. The whole-genome sequence of this strain was determined in 50 contigs, which was 4,304,865 bp with a 65.57% G+C content. In total 3,945 protein-coding genes were predicted from this assembly.

scholarly journals Whole-Genome Sequence ofCorynebacterium auriscanisStrain CIP 106629 Isolated from a Dog with Bilateral Otitis from the United Kingdom

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Sandeep Tiwari ◽  
Syed Babar Jamal ◽  
Leticia Castro Oliveira ◽  
Dominique Clermont ◽  
Chantal Bizet ◽  
...  
Keyword(s):  
United Kingdom ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Protein Coding ◽  
Protein Coding Genes ◽  
The United Kingdom ◽  
Circular Genome

In this work, we describe a set of features ofCorynebacterium auriscanisCIP 106629 and details of the draft genome sequence and annotation. The genome comprises a 2.5-Mbp-long single circular genome with 1,797 protein-coding genes, 5 rRNA, 50 tRNA, and 403 pseudogenes, with a G+C content of 58.50%.

scholarly journals Complete Genome Sequence of Staphylococcus epidermidis 1457

2017 ◽  
Vol 5 (22) ◽  
Author(s):  
Madeline R. Galac ◽  
Jason Stam ◽  
Rosslyn Maybank ◽  
Mary Hinkle ◽  
Dietrich Mack ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Staphylococcus Epidermidis ◽  
Complete Genome Sequence ◽  
Genetic Manipulation ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Protein Coding ◽  
Content Type ◽  
Related Research ◽  
Protein Coding Genes

ABSTRACT Staphylococcus epidermidis 1457 is a frequently utilized strain that is amenable to genetic manipulation and has been widely used for biofilm-related research. We report here the whole-genome sequence of this strain, which encodes 2,277 protein-coding genes and 81 RNAs within its 2.4-Mb genome and plasmid.

scholarly journals Whole-Genome Sequence of Rummeliibacillus stabekisii Strain PP9 Isolated from Antarctic Soil

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Fábio Faria da Mota ◽  
Renata Estebanez Vollú ◽  
Diogo Jurelevicius ◽  
Lucy Seldin
Keyword(s):  
Soil Sample ◽  
Genome Sequence ◽  
Noncoding Rnas ◽  
Whole Genome Sequence ◽  
Trna Genes ◽  
Whole Genome ◽  
Antarctic Soil ◽  
Circular Chromosome ◽  
Protein Coding ◽  
Protein Coding Genes

The whole genome of Rummeliibacillus stabekisii PP9, isolated from a soil sample from Antarctica, consists of a circular chromosome of 3,412,092 bp and a circular plasmid of 8,647 bp, with 3,244 protein-coding genes, 12 copies of the 16S-23S-5S rRNA operon, 101 tRNA genes, and 6 noncoding RNAs (ncRNAs).

scholarly journals Improved Draft Genome Sequence of Microcystis aeruginosa NIES-298, a Microcystin-Producing Cyanobacterium from Lake Kasumigaura, Japan

2018 ◽  
Vol 6 (5) ◽  
Author(s):  
Haruyo Yamaguchi ◽  
Shigekatsu Suzuki ◽  
Masanobu Kawachi
Keyword(s):  
Microcystis Aeruginosa ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Lake Kasumigaura ◽  
Protein Coding ◽  
Protein Coding Genes

ABSTRACT Microcystis aeruginosa is a globally well-known bloom-forming cyanobacterium. An improved draft whole-genome sequence of M. aeruginosa NIES-298, which is a microcystin-producing strain isolated from Lake Kasumigaura, Japan, is published here. The genome comprises approximately 5.0 Mbp, with an average G+C content of 42.6% and 4,537 predicted protein-coding genes.

scholarly journals Whole Genome Sequence of the Commercially Relevant Mushroom Strain Agaricus bisporus var. bisporus ARP23

2019 ◽  
Vol 9 (10) ◽  
pp. 3057-3066 ◽  
Author(s):  
Eoin O’Connor ◽  
Jamie McGowan ◽  
Charley G. P. McCarthy ◽  
Aniça Amini ◽  
Helen Grogan ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Agaricus Bisporus ◽  
Genomic Analysis ◽  
Whole Genome Sequence ◽  
Comparative Genomic ◽  
Whole Genome ◽  
Protein Coding ◽  
Single Strain ◽  
Protein Coding Genes ◽  
Starting Point

Agaricus bisporus is an extensively cultivated edible mushroom. Demand for cultivation is continuously growing and difficulties associated with breeding programs now means strains are effectively considered monoculture. While commercial growing practices are highly efficient and tightly controlled, the over-use of a single strain has led to a variety of disease outbreaks from a range of pathogens including bacteria, fungi and viruses. To address this, the Agaricus Resource Program (ARP) was set up to collect wild isolates from diverse geographical locations through a bounty-driven scheme to create a repository of wild Agaricus germplasm. One of the strains collected, Agaricus bisporus var. bisporus ARP23, has been crossed extensively with white commercial varieties leading to the generation of a novel hybrid with a dark brown pileus commonly referred to as ‘Heirloom’. Heirloom has been successfully implemented into commercial mushroom cultivation. In this study the whole genome of Agaricus bisporus var. bisporus ARP23 was sequenced and assembled with Illumina and PacBio sequencing technology. The final genome was found to be 33.49 Mb in length and have significant levels of synteny to other sequenced Agaricus bisporus strains. Overall, 13,030 putative protein coding genes were located and annotated. Relative to the other A. bisporus genomes that are currently available, Agaricus bisporus var. bisporus ARP23 is the largest A. bisporus strain in terms of gene number and genetic content sequenced to date. Comparative genomic analysis shows that the A. bisporus mating loci in unifactorial and unsurprisingly highly conserved between strains. The lignocellulolytic gene content of all A. bisporus strains compared is also very similar. Our results show that the pangenome structure of A. bisporus is quite diverse with between 60–70% of the total protein coding genes per strain considered as being orthologous and syntenically conserved. These analyses and the genome sequence described herein are the starting point for more detailed molecular analyses into the growth and phenotypical responses of Agaricus bisporus var. bisporus ARP23 when challenged with economically important mycoviruses.

scholarly journals Whole-Genome Sequence of Streptococcus parauberis Strain SP-llh, Isolated from Cows with Mastitis in Western China

2017 ◽  
Vol 5 (2) ◽  
Author(s):  
Longhai Liu ◽  
Feng Yang ◽  
Xinpu Li ◽  
Jinyin Luo ◽  
Zhe Zhang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Western China ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Streptococcus Parauberis ◽  
Large Contigs

ABSTRACT Streptococcus parauberis strain SP-llh was isolated from cows with mastitis in western China in 2015. The 2,522,235-bp genome sequence consists of 46 large contigs in 14 scaffolds and contains 2,620 predicted protein-coding genes, with a G+C content of 35.3%.

scholarly journals Whole-Genome Sequence of Haloimpatiens lingqiaonensis Strain P8956

2019 ◽  
Vol 8 (43) ◽  
Author(s):  
Hussein Anani ◽  
Didier Raoult ◽  
Pierre-Edouard Fournier
Keyword(s):  
Genome Sequence ◽  
Bacterial Isolate ◽  
Paper Mill ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Paper Mill Wastewater ◽  
Rna Genes

In 2016, Haloimpatiens lingqiaonensis was described as a bacterial isolate from paper mill wastewater. Previously, no whole-genome sequence was available for this microorganism. Whole-genome sequencing of strain P8956 yielded a 3,295,388-bp genome with a 30.7% G+C content, 2,917 protein-coding genes, and 95 predicted RNA genes.

scholarly journals Whole-Genome Sequence of Lactobacillus acidophilus PNW3, Isolated from Weaned Piglets of the Indigenous South African Windsnyer Pig Breed

2019 ◽  
Vol 8 (25) ◽  
Author(s):  
Kazeem A. Alayande ◽  
Olayinka A. Aiyegoro ◽  
Collins N. Ateba
Keyword(s):  
South African ◽  
Genome Sequence ◽  
Lactobacillus Acidophilus ◽  
Draft Genome ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Weaned Piglets ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

A draft genome sequence of Lactobacillus acidophilus PNW3 is reported. The genome assembly is 1,857,655 bp long in 25 contigs with an N 50 value of 230,557 bp and a G+C content of 34.6%. The total number of predicted protein-coding genes is 1,776, with 58 predicted RNAs and 42 predicted pseudogenes.

scholarly journals Complete Genome Sequence of Staphylococcus epidermidis CSF41498

2019 ◽  
Vol 8 (2) ◽  
Author(s):  
M. R. Galac ◽  
Tra-My Hoang ◽  
Ana C. Ong ◽  
M. Hinkle ◽  
J. P. O’Gara ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Staphylococcus Epidermidis ◽  
Complete Genome Sequence ◽  
Biofilm Formation ◽  
Genetic Manipulation ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

Staphylococcus epidermidis CSF41498 is amenable to genetic manipulation and has been used to study mechanisms of biofilm formation. We report here the whole-genome sequence of this strain, which contains 2,427 protein-coding genes and 82 RNAs within its 2,481,008-bp-long genome, as well as three plasmids.

scholarly journals Whole-Genome Sequence of Corynebacterium xerosis Strain GS1, Isolated from Yak in Gansu Province, China

2019 ◽  
Vol 8 (37) ◽  
Author(s):  
Fengqin Wen ◽  
Xiaoyong Xing ◽  
Shijun Bao ◽  
Yonghao Hu ◽  
Bao-cheng Hao
Keyword(s):  
Genome Sequence ◽  
Liver Lesion ◽  
Gansu Province ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

We report here the isolation, sequencing of the complete closed genome, and annotation of Corynebacterium xerosis strain GS1. This strain was isolated from the liver lesion of a yak in Gansu Province, China. The genome consists of one chromosome with 2,738,835 bp and comprises 2,304 protein-coding genes.

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