scholarly journals Draft Genome Sequence of Shewanella sp. Strain ISO12, a Candidate Probiotic Isolated from the Intestine of Fundulus heteroclitus

2020 ◽  
Vol 9 (22) ◽  
Author(s):  
Harold J. Schreier
Keyword(s):  
Genome Sequence ◽  
Fundulus Heteroclitus ◽  
Draft Genome ◽  
Bioinformatic Analysis ◽  
Draft Genome Sequence ◽  
Genes Encoding ◽  
Probiotic Activity

ABSTRACT The genome of Shewanella sp. strain ISO12, which was isolated from the intestine of wild-caught Fundulus heteroclitus, was sequenced and is reported here. Bioinformatic analysis revealed genes encoding the bacteriocin marinocine and those potentially associated with probiotic activity. The genome sequence will assist in further identifying probiotic and other antibacterial processes.

scholarly journals Draft Genome Sequence of Streptomyces sp. TP-A0874, a Catechoserine Producer

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Hisayuki Komaki ◽  
Akira Hosoyama ◽  
Natsuko Ichikawa ◽  
Yasuhiro Igarashi
Keyword(s):  
Genome Sequence ◽  
Cell Invasion ◽  
Draft Genome ◽  
Gene Clusters ◽  
Bioinformatic Analysis ◽  
Biosynthetic Gene Cluster ◽  
Tumor Cell Invasion ◽  
Draft Genome Sequence ◽  
Biosynthetic Gene ◽  
Streptomyces Sp

We report the draft genome sequence of Streptomyces sp. TP-A0874 isolated from compost. This strain produces catechoserine, a new catecholate-type inhibitor of tumor cell invasion. The genome harbors at least six gene clusters for polyketide and nonribosomal peptide biosyntheses. The biosynthetic gene cluster for catechoserines was identified by bioinformatic analysis.

scholarly journals Draft Genome Sequence of Modestobacter sp. strain VKM Ac-2676 from soil in the area of sharply continental climate

2017 ◽  
Author(s):  
Oleg V. Vasilenko ◽  
Sergey V. Tarlachkov ◽  
Irina P. Starodumova ◽  
Elena V. Ariskina ◽  
Kseniya I. Ariskina ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Ion Torrent ◽  
Sequencing Technology ◽  
Climate Zone ◽  
Genes Encoding ◽  
Ion Torrent Sequencing ◽  
Continental Climate

A draft genome sequence of a novel actinobacterium, Modestobacter sp. strain VKM Ac-2676, was derived using Ion Torrent sequencing technology. The genome size is 3.88 Mb with average G+C content of 73.40%. The genes encoding properties relevant to adaptability of this bacterium to a sharply continental climate zone were revealed.

scholarly journals Draft Genome Sequence of Lignin-Degrading Agrobacterium sp. Strain S2, Isolated from a Decaying Oil Palm Empty Fruit Bunch

2021 ◽  
Vol 10 (19) ◽  
Author(s):  
Ummu Habibah Faisal ◽  
Nurul Syazwani Ahmad Sabri ◽  
Nurtasbiyah Yusof ◽  
Analhuda Abdullah Tahir ◽  
Nuurul Nadrah Mohd Said ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Oil Palm ◽  
Lignin Degradation ◽  
Draft Genome ◽  
Gc Content ◽  
Draft Genome Sequence ◽  
Empty Fruit Bunch ◽  
Genes Encoding

ABSTRACT We report the draft genome sequence of Agrobacterium sp. strain S2, isolated from a decaying oil palm empty fruit bunch (OPEFB) in Negeri Sembilan, Malaysia, which yields potential genes encoding lignin degradation enzymes. This genome of 9,722,071 bp exhibited 58.9% GC content, 10,416 coding genes, and 12 RNAs.

scholarly journals Draft Genome Sequence of a Klebsiella pneumoniae Strain (New Sequence Type 2357) Carrying Tn 3926

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Xing-bei Weng ◽  
Zu-huang Mi ◽  
Chun-xin Wang ◽  
Jian-ming Zhu
Keyword(s):  
Klebsiella Pneumoniae ◽  
Genome Sequence ◽  
Human Blood ◽  
Draft Genome ◽  
Sequence Type ◽  
Draft Genome Sequence ◽  
Drug Resistant ◽  
Beta Lactams ◽  
Resistant Genes ◽  
Genes Encoding

We present the draft genome sequence of a Klebsiella pneumoniae carbapenemase–producing sequence type 2357 (ST2357) strain, NB60, which contains drug-resistant genes encoding resistance to beta-lactams, fluoroquinolones, aminoglycosides, trimethoprim-sulfamethoxazole, colistin, macrolides, and tetracycline. Strain NB60 was isolated from human blood, making it an important tool for studying K. pneumoniae pathogenesis.

scholarly journals Comparative analysis using the draft genome sequence of California poppy (Eschscholzia californica) for exploring the candidate genes involved in benzylisoquinoline alkaloid biosynthesis

2021 ◽  
Vol 85 (4) ◽  
pp. 851-859
Author(s):  
Yasuyuki Yamada ◽  
Hideki Hirakawa ◽  
Kentaro Hori ◽  
Yohei Minakuchi ◽  
Atsushi Toyoda ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Plant Species ◽  
Genome Sequence ◽  
Repetitive Sequences ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Rrna Genes ◽  
Eschscholzia Californica ◽  
California Poppy ◽  
Genes Encoding

ABSTRACT Genome characterization of California poppy (Eschscholzia californica cv. “Hitoezaki”), which produces pharmaceutically important benzylisoquinoline alkaloids (BIAs), was carried out using the draft genome sequence. The numbers of tRNA and rRNA genes were close to those of the other plant species tested, whereas the frequency of repetitive sequences was distinct from those species. Comparison of the predicted genes with those of Amborella trichopoda, Nelumbo nucifera, Solanum lycopersicum, and Arabidopsis thaliana, and analyses of gene ontology and Kyoto Encyclopedia of Genes and Genomes pathway indicated that the enzyme genes involved in BIA biosynthesis were highly enriched in the California poppy genome. Further comparative analysis using the genome information of Papaver somniferum and Aquilegia coerulea, both BIA-producing plants, revealed that many genes encoding BIA biosynthetic enzymes, transcription factors, transporters, and candidate proteins, possibly related to BIA biosynthesis, were specifically distributed in these plant species.

scholarly journals Draft Genome Sequence of Marine-Derived Aeromonas caviae CHZ306, a Potential Chitinase Producer Strain

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Flávio Augusto Cardozo ◽  
Cristina Kraemer Zimpel ◽  
Ana Marcia Sa Guimaraes ◽  
Adalberto Pessoa ◽  
Irma Nelly Gutierrez Rivera
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Genomic Analysis ◽  
Draft Genome Sequence ◽  
Producer Strain ◽  
Degrading Enzymes ◽  
Aeromonas Caviae ◽  
Genes Encoding

We report here a draft genome sequence of Aeromonas caviae CHZ306, a marine-derived bacterium with the ability to hydrolyze chitin and express high levels of chitinases. The assembly resulted in 65 scaffolds with approximately 4.78 Mb. Genomic analysis revealed different genes encoding chitin-degrading enzymes that can be used for chitin derivative production.

scholarly journals Draft Genome Sequence of Carbaryl-Degrading Soil Isolate Pseudomonas sp. Strain C5pp

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Vikas D. Trivedi ◽  
Pramod Kumar Jangir ◽  
Rakesh Sharma ◽  
Prashant S. Phale
Keyword(s):  
Genome Sequence ◽  
Metal Tolerance ◽  
Draft Genome ◽  
Heavy Metal Tolerance ◽  
Draft Genome Sequence ◽  
Pseudomonas Sp ◽  
Soil Isolate ◽  
Genes Encoding ◽  
Evolutionary Aspects ◽  
Insight Into

We report the draft genome sequence of carbaryl-degrading Pseudomonas sp. strain C5pp. Genes encoding salicylate and gentisate metabolism, large amounts of oxygenase, nitrogen metabolism, and heavy metal tolerance were identified. The sequence will provide further insight into the biochemical and evolutionary aspects of carbaryl degradation.

scholarly journals Draft Genome Sequence of Multidrug-Resistant Proteus mirabilis CKTH01, Isolated from Raw Chicken Meat

2019 ◽  
Vol 8 (38) ◽  
Author(s):  
Supatra Areekit ◽  
Nuttida Thongpramul ◽  
Wariya Yamprayoonswat ◽  
Watthanachai Jumpathong ◽  
Satapanawat Sittihan ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Proteus Mirabilis ◽  
Draft Genome ◽  
Multidrug Resistant ◽  
Chicken Meat ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Multidrug Efflux Pumps ◽  
Genes Encoding ◽  
Antibiotic Resistant Bacterium

Proteus mirabilis CKTH01 is a pathogenic bacterium isolated from raw chicken meat. The genome sequence of P. mirabilis CKTH01 contains genes encoding multidrug efflux pumps, which are the virulence factors of the antibiotic-resistant bacterium. This 3.98-Mb draft genome sequence of P. mirabilis CKTH01 will contribute to the understanding of the distribution of multidrug-resistant P. mirabilis in raw chicken meat at the open markets.

scholarly journals Draft Genome Sequence of Janthinobacterium sp. Strain SLB01, Isolated from the Diseased Sponge Lubomirskia baicalensis

2019 ◽  
Vol 8 (45) ◽  
Author(s):  
Ivan S. Petrushin ◽  
Sergei I. Belikov ◽  
Lubov I. Chernogor
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Janthinobacterium Lividum ◽  
Lubomirskia Baicalensis ◽  
Genes Encoding ◽  
Psychrotolerant Bacterium

The draft genome sequence of Janthinobacterium sp. strain SLB01, a violacein-producing psychrotolerant bacterium isolated from the diseased sponge Lubomirskia baicalensis, was determined. We identified five genes encoding VioA, VioB, VioC, VioD, and VioE proteins related to violacein biosynthesis that were like those identified in published Janthinobacterium lividum strains MTR and RIT308.

scholarly journals Draft Genome Sequence of Pseudomonas sp. Strain MWU12-2323, Isolated from a Wild Cranberry Bog in Truro, Massachusetts

2020 ◽  
Vol 9 (2) ◽  
Author(s):  
Ghazal Ebadzadsahrai ◽  
Scott Soby
Keyword(s):  
Secondary Metabolite ◽  
Genome Sequence ◽  
Draft Genome ◽  
Low Ph ◽  
Draft Genome Sequence ◽  
Pseudomonas Sp ◽  
Rich Diversity ◽  
Genes Encoding ◽  
Carbohydrate Polymer ◽  
Bog Soils

Exploration of novel environments such as low-pH wild cranberry bog soils yields a rich diversity of bacteria, including Pseudomonas spp. Here, we present the draft genome sequence of Pseudomonas sp. strain MWU12-2323, isolated from wild cranberry plant rhizosphere. The genome has secondary metabolite genes encoding carbohydrate polymer-degrading enzymes.

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