scholarly journals Draft Genome Sequence of Candida auris Strain LOM, a Human Clinical Isolate from Greater Metropolitan Houston, Texas

2019 ◽  
Vol 8 (25) ◽  
Author(s):  
S. Wesley Long ◽  
Randall J. Olsen ◽  
Hoang A. T. Nguyen ◽  
Matthew Ojeda Saavedra ◽  
James M. Musser
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Metropolitan Region ◽  
Draft Genome Sequence ◽  
Nanopore Sequencing ◽  
Emerging Pathogen ◽  
Candida Auris ◽  
Public Health Importance ◽  
Content Type ◽  
Oxford Nanopore

Candida auris is an emerging pathogen of considerable public health importance. We present the draft genome sequence of a strain recently cultured from the urine of a patient hospitalized in the greater Houston metropolitan region. Two combined Oxford Nanopore sequencing runs provided sufficient data to rapidly generate a draft genome.

scholarly journals Draft Genome Sequence of Candida auris Strain LOM, a Human Clinical Isolate from Greater Metropolitan Houston, Texas

2019 ◽  
Author(s):  
S. Wesley Long ◽  
Randall J. Olsen ◽  
Hoang A. T. Nguyen ◽  
Matthew Ojeda Saavedra ◽  
James M. Musser
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Metropolitan Region ◽  
Draft Genome Sequence ◽  
Nanopore Sequencing ◽  
Sufficient Data ◽  
Emerging Pathogen ◽  
Candida Auris ◽  
Public Health Importance ◽  
Oxford Nanopore

ABSTRACTCandida auris is an emerging pathogen with considerable public health importance. We present the draft genome sequence of a strain recently cultured from the urine of a patient hospitalized in the greater Houston metropolitan region. Two combined Oxford Nanopore sequencing runs provided sufficient data to rapidly generate a draft genome.

scholarly journals Draft Genome Sequence of Hypervirulent and Vaccine Candidate Streptococcus suis Strain SC19

2017 ◽  
Vol 5 (3) ◽  
Author(s):  
Lin Teng ◽  
Xingxing Dong ◽  
Yang Zhou ◽  
Zhiwei Li ◽  
Limei Deng ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Vaccine Candidate ◽  
Draft Genome ◽  
Streptococcus Suis ◽  
Draft Genome Sequence ◽  
Emerging Pathogen ◽  
Content Type ◽  
Candidate Strain

ABSTRACT Streptococcus suis, a zoonotic bacterium found primarily in pigs, has been recognized recently as an emerging pathogen of humans. Herein, we describe the genome of Streptococcus suis strain SC19, a hypervirulent and vaccine candidate strain isolated from a pig amid the 2005 outbreak in China.

scholarly journals Draft Genome Sequence of Mycobacterium abscessus Bamboo

2017 ◽  
Vol 5 (20) ◽  
Author(s):  
Michelle Yee ◽  
David Klinzing ◽  
Jun-Rong Wei ◽  
Martin Gengenbacher ◽  
Eric J. Rubin ◽  
...  
Keyword(s):  
Drug Discovery ◽  
Genome Sequence ◽  
Draft Genome ◽  
Multidrug Resistant ◽  
Mycobacterium Abscessus ◽  
New Drugs ◽  
Draft Genome Sequence ◽  
Emerging Pathogen ◽  
Content Type ◽  
Medical Need

ABSTRACT Mycobacterium abscessus, an intrinsically multidrug-resistant pathogen, causes chronic incurable lung disease. New drugs for this emerging pathogen represent an urgent unmet medical need. Here, we report a draft genome sequence of M. abscessus Bamboo, a clinical isolate used as a screening strain for drug discovery.

scholarly journals Draft Genome Sequence of an Environmental Vibrio cholerae Strain, 2012Env-25, Obtained Using Nanopore Sequencing Technology

2020 ◽  
Vol 9 (32) ◽  
Author(s):  
V Lyju Jose ◽  
Matthew T. Pileggi ◽  
Meer Taifur Alam ◽  
Afsar Ali ◽  
Adam C. N. Wong
Keyword(s):  
Vibrio Cholerae ◽  
Genome Sequence ◽  
Bacterial Species ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Cholerae Strain ◽  
Pathogenic Potential ◽  
Content Type ◽  
Oxford Nanopore ◽  
Oxford Nanopore Technologies

ABSTRACT Vibrio cholerae is a halophilic Gram-negative bacterial species and the etiological agent of cholera. Here, we report the draft genome sequence of an environmental V. cholerae strain, 2012Env-25, obtained using Oxford Nanopore Technologies (ONT) to provide insights into the ecology, evolution, and pathogenic potential of this bacterium.

scholarly journals Draft Genome Sequence of Weissella paramesenteroides STCH-BD1, Isolated from Ensiled Sorghum bicolor

2021 ◽  
Vol 10 (7) ◽  
Author(s):  
Ashley V. Baugh ◽  
Thomas M. Howarth ◽  
Katrina L. West ◽  
Lydia E. J. Kerr ◽  
John Love ◽  
...  
Keyword(s):  
Lactic Acid ◽  
Sorghum Bicolor ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Hybrid Assembly ◽  
Content Type ◽  
Plasmid Sequence ◽  
Oxford Nanopore ◽  
Illumina Data

ABSTRACT Weissella paramesenteroides has potential as an industrial biocatalyst due to its ability to produce lactic acid. A novel strain of W. paramesenteroides was isolated from ensiled sorghum. The genome was sequenced using a hybrid assembly of Oxford Nanopore and Illumina data to produce a 2-Mbp genome and 22-kbp plasmid sequence.

scholarly journals Draft Genome Sequence of Rhodotorula mucilaginosa from an Adult Patient in Qatar

2021 ◽  
Vol 10 (42) ◽  
Author(s):  
Sathyavathi Sundararaju ◽  
Husam Salah ◽  
Emad B. Ibrahim ◽  
Andres Perez-Lopez ◽  
Fatma Ben Abid ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Fungal Pathogen ◽  
Draft Genome ◽  
Immunocompetent Patient ◽  
Draft Genome Sequence ◽  
Rhodotorula Mucilaginosa ◽  
Public Health Importance ◽  
Content Type ◽  
Opportunistic Fungal Pathogen ◽  
Reference Genomes

Rhodotorula mucilaginosa is an opportunistic fungal pathogen of public health importance. We present the draft genome sequence of an isolate (Rhodo3571) cultured from an immunocompetent patient. The isolate is similar to other R. mucilaginosa genomes in the NCBI database. Presented here are the genome assembly and its comparison to other reference genomes.

scholarly journals Human Infections Caused by Clonally Related African Clade (Clade III) Strains of Candida auris in the Greater Houston Region

2020 ◽  
Vol 58 (7) ◽  
Author(s):  
S. Wesley Long ◽  
Matthew Ojeda Saavedra ◽  
Paul A. Christensen ◽  
James M. Musser ◽  
Randall J. Olsen
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Clinical Laboratory ◽  
Draft Genome ◽  
The United States ◽  
Metropolitan Region ◽  
Whole Genome Sequence ◽  
Candida Auris ◽  
Content Type ◽  
African Clade

ABSTRACT Candida auris is a pathogen of considerable public health importance. It was first reported in 2009. Five clades, determined by genomic analysis and named by the distinct regions where they were initially identified, have been defined. We previously completed a draft genome sequence of an African clade (clade III) strain cultured from the urine of a patient hospitalized in the greater Houston metropolitan region (strain LOM). Although initially uncommon, reports of the African clade in the United States have grown to include a recent cluster in California. Here, we describe a second human C. auris infection in the Houston area. Whole-genome sequence analysis demonstrated the Houston patient isolates to be clonally related to one another but distantly related to other African clade organisms recovered in the United States or elsewhere. Infections in these patients were present on admission to the hospital and occurred several months apart. Taken together, the data demonstrate the emergence and persistence of a clonal C. auris population and highlights the importance of routine high-resolution genomic surveillance of emerging human pathogens in the clinical laboratory.

scholarly journals Draft Genome Sequence of Aeromonas caviae UFMG-H8, Isolated from Urine from a Healthy Bovine Heifer (Gyr Breed)

2020 ◽  
Vol 9 (19) ◽  
Author(s):  
Silvia Giannattasio-Ferraz ◽  
Laura Maskeri ◽  
André P. Oliveira ◽  
Edel F. Barbosa-Stancioli ◽  
Catherine Putonti
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Emerging Pathogen ◽  
Content Type ◽  
Aeromonas Caviae ◽  
Intestinal Infections

Aeromonas caviae is an emerging pathogen in humans, causing intestinal infections. Here, we report Aeromonas caviae strain UFMG-H8, isolated from the urine of a healthy heifer (Gyr breed).

scholarly journals Draft Genome Sequence of Urease-Producing Pseudorhodobacter sp. Strain E13, Isolated from the Yellow Sea in Gunsan, South Korea

2019 ◽  
Vol 8 (23) ◽  
Author(s):  
Si Chul Kim ◽  
Hyo Jung Lee
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Yellow Sea ◽  
Draft Genome ◽  
The Yellow Sea ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Gram Negative ◽  
Content Type

Here, we report the draft genome sequence of Pseudorhodobacter sp. strain E13, a Gram-negative, aerobic, nonflagellated, and rod-shaped bacterium which was isolated from the Yellow Sea in South Korea. The assembled genome sequence is 3,878,578 bp long with 3,646 protein-coding sequences in 159 contigs.

scholarly journals Draft Genome Sequence of a Vibrio harveyi Strain Associated with Vibriosis in Pacific White Shrimp (Litopenaeus vannamei)

2017 ◽  
Vol 5 (7) ◽  
Author(s):  
Emille Moreno ◽  
Marci Parks ◽  
Lee J. Pinnell ◽  
James J. Tallman ◽  
Jeffrey W. Turner
Keyword(s):  
Genome Sequence ◽  
Litopenaeus Vannamei ◽  
Vibrio Harveyi ◽  
Draft Genome ◽  
Penaeid Shrimp ◽  
Pacific White Shrimp ◽  
Draft Genome Sequence ◽  
White Shrimp ◽  
Content Type ◽  
Future Studies

ABSTRACT Vibrio harveyi is a Gram-negative bacterium associated with vibriosis in penaeid shrimp. Here, we report the draft genome sequence of a V. harveyi strain isolated from Pacific white shrimp (Litopenaeus vannamei) during a vibriosis outbreak. The availability of this genome will aid future studies of vibriosis in shrimp aquaculture.

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