scholarly journals Whole-Genome Sequences of 35 Incompatibility Group I1 Plasmid-Carrying Salmonella enterica Isolates from Food Animal and Clinical Sources

2019 ◽  
Vol 8 (35) ◽  
Author(s):  
Nesreen H. Aljahdali ◽  
Pravin R. Kaldhone ◽  
Steven L. Foley ◽  
Bijay K. Khajanchi
Keyword(s):  
Antimicrobial Resistance ◽  
Resistance Genes ◽  
Salmonella Enterica ◽  
Whole Genome ◽  
Genome Sequences ◽  
Incompatibility Group ◽  
Content Type ◽  
Food Animal ◽  
Antimicrobial Resistance Genes ◽  
Genotypic Characteristics

We sequenced 35 Salmonella enterica isolates carrying incompatibility group I1 (IncI1) plasmids from different serotypes to study their genotypic characteristics. The isolates originated from food animals (n = 32) and human patients (n = 3). All isolates carried IncI1 plasmids, and many had additional plasmids detected along with virulence and antimicrobial resistance genes.

scholarly journals Whole-Genome Sequences of 66 Incompatibility Group FIB Plasmid-Carrying Salmonella enterica Serovar Typhimurium Isolates from Food Animal Sources

2020 ◽  
Vol 9 (5) ◽  
Author(s):  
Nesreen H. Aljahdali ◽  
Steven L. Foley ◽  
Jing Han ◽  
Yasser M. Sanad ◽  
Rajesh Nayak ◽  
...  
Keyword(s):  
Antimicrobial Resistance ◽  
Resistance Genes ◽  
Salmonella Enterica ◽  
Salmonella Enterica Serovar Typhimurium ◽  
Incompatibility Group ◽  
Content Type ◽  
Factors Associated ◽  
Food Animal ◽  
Antimicrobial Resistance Genes ◽  
Serovar Typhimurium

Sixty-six Salmonella enterica serovar Typhimurium isolates carrying incompatibility group FIB (IncFIB) plasmids were sequenced to further characterize the IncFIB plasmid-encoded factors associated with virulence and antimicrobial resistance genes. In addition to the IncFIB plasmid, many of these isolates harbored additional plasmids encoding virulence and antimicrobial resistance genes.

scholarly journals Draft Whole-Genome Sequences of Two Multidrug-Resistant Salmonella enterica Serovar Senftenberg Sequence Type 14 Strains Resistant to Ciprofloxacin, Ceftriaxone, and/or Azithromycin, Isolated from Kolkata, India

2022 ◽  
Author(s):  
Priyanka Jain ◽  
Rajlakshmi Viswanathan ◽  
Gourab Halder ◽  
Sulagna Basu ◽  
Shanta Dutta
Keyword(s):  
Antimicrobial Resistance ◽  
Resistance Genes ◽  
Salmonella Enterica ◽  
Multidrug Resistant ◽  
Sequence Type ◽  
Whole Genome ◽  
Genome Sequences ◽  
Content Type ◽  
Goat Meat ◽  
Antimicrobial Resistance Genes

We report draft whole-genome sequences of two multidrug-resistant Salmonella enterica serovar Senftenberg sequence type 14 strains resistant to ciprofloxacin, ceftriaxone, and/or azithromycin, which were isolated from neonatal stool and goat meat in Kolkata, India. The genome characteristics, as well as the antimicrobial resistance genes, plasmid types, and integrons, are presented in this report.

scholarly journals Conjugal Transfer, Whole-Genome Sequencing, and Plasmid Analysis of Four mcr-1-Bearing Isolates from U.S. Patients

2019 ◽  
Vol 63 (4) ◽  
Author(s):  
Wenming Zhu ◽  
Adrian Lawsin ◽  
Rebecca L. Lindsey ◽  
Dhwani Batra ◽  
Kristen Knipe ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Antimicrobial Resistance ◽  
Genome Sequencing ◽  
Resistance Genes ◽  
Whole Genome ◽  
Colistin Resistance ◽  
Content Type ◽  
Plasmid Analysis ◽  
Antimicrobial Resistance Genes

ABSTRACT Four Enterobacteriaceae clinical isolates bearing mcr-1 gene-harboring plasmids were characterized. All isolates demonstrated the ability to transfer colistin resistance to Escherichia coli; plasmids were stable in conjugants after multiple passages on nonselective media. mcr-1 was located on an IncX4 (n = 3) or IncN (n = 1) plasmid. The IncN plasmid harbored 13 additional antimicrobial resistance genes. Results indicate that the mcr-1-bearing plasmids in this study were highly transferable in vitro and stable in the recipients.

scholarly journals Complete Genome Sequences of the Potential Zoonotic Pathogens Staphylococcus felis and Staphylococcus kloosii

2018 ◽  
Vol 6 (20) ◽  
Author(s):  
Anne Caroline Mascarenhas dos Santos ◽  
Ruili Jie ◽  
Helena Antunes Godoy ◽  
Manuela Alves ◽  
Jean-François Pombert
Keyword(s):  
Antimicrobial Resistance ◽  
Resistance Genes ◽  
Opportunistic Pathogens ◽  
Genome Sequences ◽  
Coagulase Negative Staphylococci ◽  
Content Type ◽  
Antimicrobial Resistance Genes ◽  
Zoonotic Risk ◽  
Complete Genomes ◽  
Potential Reservoir

ABSTRACT Coagulase-negative staphylococci (CoNS) are opportunistic pathogens frequently encountered in nosocomial infections. Animal-associated CoNS pose a zoonotic risk and constitute a potential reservoir for virulence and antimicrobial resistance genes. To improve our knowledge of animal-associated CoNS, we sequenced the complete genomes of Staphylococcus felis (ATCC 49168) and Staphylococcus kloosii (ATCC 43959).

scholarly journals Whole-Genome Sequences of Salmonella enterica Serovar I 4,[5],12:i:− Isolates from Swine

2019 ◽  
Vol 8 (21) ◽  
Author(s):  
Selma Gonzalez ◽  
Roger B. Harvey ◽  
H. Morgan Scott ◽  
Sara D. Lawhon ◽  
Javier Vinasco ◽  
...  
Keyword(s):  
Antimicrobial Resistance ◽  
Salmonella Enterica ◽  
Multidrug Resistant ◽  
Whole Genome ◽  
Genome Sequences ◽  
Tissue Samples ◽  
Content Type ◽  
Enteric Infections ◽  
Swine Tissue

Salmonella enterica (non-Typhi) is one of the top five pathogens causing enteric infections worldwide. Draft whole-genome sequences of multidrug-resistant (MDR) Salmonella enterica serovar I 4,[5],12:i:− isolates from swine tissue samples collected at slaughter were evaluated for antimicrobial resistance genotypes.

scholarly journals Microarray-Based Analysis of IncA/C Plasmid-Associated Genes from Multidrug-Resistant Salmonella enterica

2011 ◽  
Vol 77 (19) ◽  
pp. 6991-6999 ◽  
Author(s):  
Rebecca L. Lindsey ◽  
Jonathan G. Frye ◽  
Paula J. Fedorka-Cray ◽  
Richard J. Meinersmann
Keyword(s):  
Antimicrobial Resistance ◽  
Resistance Genes ◽  
Salmonella Enterica ◽  
The United States ◽  
Mercury Resistance ◽  
Yersinia Ruckeri ◽  
Content Type ◽  
Geographical Regions ◽  
Antimicrobial Resistance Genes ◽  
Photobacterium Damselae

ABSTRACTIn the familyEnterobacteriaceae, plasmids have been classified according to 27 incompatibility (Inc) or replicon types that are based on the inability of different plasmids with the same replication mechanism to coexist in the same cell. Certain replicon types such as IncA/C are associated with multidrug resistance (MDR). We developed a microarray that contains 286 unique 70-mer oligonucleotide probes based on sequences from five IncA/C plasmids: pYR1 (Yersinia ruckeri), pPIP1202 (Yersinia pestis), pP99-018 (Photobacterium damselae), pSN254 (Salmonella entericaserovar Newport), and pP91278 (Photobacterium damselae). DNA from 59Salmonella entericaisolates was hybridized to the microarray and analyzed for the presence or absence of genes. These isolates represented 17 serovars from 14 different animal hosts and from different geographical regions in the United States. Qualitative cluster analysis was performed using CLUSTER 3.0 to group microarray hybridization results. We found that IncA/C plasmids occurred in two lineages distinguished by a major insertion-deletion (indel) region that contains genes encoding mostly hypothetical proteins. The most variable genes were represented by transposon-associated genes as well as four antimicrobial resistance genes (aphA,merP,merA, andaadA). Sixteen mercury resistance genes were identified and highly conserved, suggesting that mercury ion-related exposure is a stronger pressure than anticipated. We used these data to construct a core IncA/C genome and an accessory genome. The results of our studies suggest that the transfer of antimicrobial resistance determinants by transfer of IncA/C plasmids is somewhat less common than exchange within the plasmids orchestrated by transposable elements, such as transposons, integrating and conjugative elements (ICEs), and insertion sequence common regions (ISCRs), and thus pose less opportunity for exchange of antimicrobial resistance.

scholarly journals Closed Genome Sequences and Antimicrobial Resistance Profiles of Eight Wild Bird Salmonella Isolates Obtained with MinION and Illumina MiSeq Sequencing

2020 ◽  
Vol 9 (25) ◽  
Author(s):  
Sohail Naushad ◽  
Marc-Olivier Duceppe ◽  
Andrée Ann Dupras ◽  
Ruimin Gao ◽  
Dele Ogunremi
Keyword(s):  
Antimicrobial Resistance ◽  
Salmonella Enterica ◽  
Wild Bird ◽  
Illumina Miseq ◽  
Illumina Miseq Sequencing ◽  
Miseq Sequencing ◽  
Genome Sequences ◽  
Content Type ◽  
Antimicrobial Resistance Genes ◽  
Average Size

ABSTRACT Complete genome sequences of eight isolates of Salmonella enterica subsp. enterica from Canadian wild birds were determined by MinION and Illumina MiSeq sequencing. Assembled chromosomes had an average size of 4,833,662 bp. Salmonella enterica serovar Worthington obtained from partridge and quail carried 267-kb plasmids, which contained multiple antimicrobial resistance genes.

scholarly journals Complete Genome Sequences of Four Streptococcus canis Strains Isolated from Dogs in South Korea

2020 ◽  
Vol 9 (33) ◽  
Author(s):  
Jae-Seok Kim ◽  
Shoichi Sakaguchi ◽  
Yasuto Fukushima ◽  
Haruno Yoshida ◽  
Takashi Nakano ◽  
...  
Keyword(s):  
Antimicrobial Resistance ◽  
South Korea ◽  
Resistance Genes ◽  
Complete Genome ◽  
Genome Sequences ◽  
Content Type ◽  
Antimicrobial Resistance Genes ◽  
Streptococcus Canis ◽  
Sequence Types

ABSTRACT This study reports the complete genome sequences of four strains of Streptococcus canis isolated from dogs in South Korea. Their genomes ranged from 2.157 to 2.265 Mbp, with a G+C content of 39.6% to 39.7%. The sequence types, antimicrobial resistance genes, and S. canis M-like protein alleles were characterized.

scholarly journals Whole-Genome Sequences of Two Campylobacter coli Isolates from the Antimicrobial Resistance Monitoring Program in Colombia: TABLE 1 

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Johan F. Bernal ◽  
Pilar Donado-Godoy ◽  
María Fernanda Valencia ◽  
Maribel León ◽  
Yolanda Gómez ◽  
...  
Keyword(s):  
Multidrug Resistance ◽  
Antimicrobial Resistance ◽  
Campylobacter Jejuni ◽  
Resistance Genes ◽  
Monitoring Program ◽  
Campylobacter Coli ◽  
Whole Genome ◽  
Genome Sequences ◽  
Resistance Monitoring ◽  
Antimicrobial Resistance Genes

Campylobacter coli , along with Campylobacter jejuni , is a major agent of gastroenteritis and acute enterocolitis in humans. We report the whole-genome sequences of two multidrug-resistance C. coli strains, isolated from the Colombian poultry chain. The isolates contain a variety of antimicrobial resistance genes for aminoglycosides, lincosamides, fluoroquinolones, and tetracycline.

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