scholarly journals Complete Genome Sequences of Two Pseudomonas Species Isolated from Marine Environments of the Pacific Ocean

2021 ◽  
Vol 10 (16) ◽  
Author(s):  
Shi-Zhen Wang ◽  
Corinne Cruaud ◽  
Jean-Marc Aury ◽  
David Vallenet ◽  
Julie Poulain ◽  
...  
Keyword(s):  
Pacific Ocean ◽  
Complete Genome ◽  
Whole Genome ◽  
Marine Environments ◽  
Pseudomonas Oleovorans ◽  
Genome Sequences ◽  
Content Type ◽  
The Pacific ◽  
Pseudomonas Species ◽  
The Pacific Ocean

ABSTRACT Pseudomonas marincola YsY11 and Pseudomonas oleovorans T9AD were both isolated from marine environments of the Pacific Ocean. Here, we report the whole-genome sequences of these two organisms. Pseudomonas marincola YsY11 consists of a single 4.77-Mb chromosome, and Pseudomonas oleovorans T9AD consists of a 5.57-Mb chromosome and a 2.8-kb plasmid.

scholarly journals Solimonas marina sp. nov., isolated from deep seawater of the Pacific Ocean

2021 ◽  
Vol 71 (1) ◽  
Author(s):  
Xiupian Liu ◽  
Qiliang Lai ◽  
Fengqin Sun ◽  
Yaping Du ◽  
Yingbao Gai ◽  
...  
Keyword(s):  
Pacific Ocean ◽  
Type Species ◽  
Sequence Similarity ◽  
Rrna Gene ◽  
Chromosomal Dna ◽  
Deep Seawater ◽  
Content Type ◽  
Link Type ◽  
The Pacific ◽  
The Pacific Ocean

A taxonomic study was carried out on strain C16B3T, which was isolated from deep seawater of the Pacific Ocean. The bacterium was Gram-stain-negative, oxidase- and catalase- positive and rod-shaped. Growth was observed at salinities of 0–8.0 % and at temperatures of 10–45 °C. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain C16B3T belonged to the genus Solimonas , with the highest sequence similarity to Solimonas terrae KIS83-12T (97.2 %), followed by Solimonas variicoloris MN28T (97.0 %) and the other four species of the genus Solimonas (94.5 –96.8 %). The average nucleotide identity and estimated DNA–DNA hybridization values between strain C16B3T and the type strains of the genus Solimonas were 74.05−79.48 % and 19.5–22.5 %, respectively. The principal fatty acids (>5 %) were summed feature 8 (C18 : 1  ω7c/C18 : 1  ω6c; 20.9 %), iso-C16 : 0 (14.6 %), C16 : 1  ω5c (9.4 %), iso-C12 : 0 (8.4 %), summed feature 2 (C14 : 0 3-OH/iso I-C16 : 1 and C12 : 0 aldehyde; 6.8 %) and C16 : 0 (5.5 %). The G+C content of the chromosomal DNA was 65.37 mol%. The respiratory quinone was determined to be Q-8 (100 %). The polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, four unidentified aminolipids, six unidentified phospholipids and one unidentified polar lipid. The combined genotypic and phenotypic data show that strain C16B3T represents a novel species within the genus Solimonas , for which the name Solimonas marina sp. nov. is proposed, with the type strain C16B3T (=MCCC 1A04678T=KCTC 52314T).

scholarly journals Whole-Genome Sequences of Three Plant Growth-Promoting Rhizobacteria Isolated from Solanum tuberosum L. Rhizosphere in Tanzania

2020 ◽  
Vol 9 (20) ◽  
Author(s):  
Becky N. Aloo ◽  
Ernest R. Mbega ◽  
Billy A. Makumba ◽  
Ines Friedrich ◽  
Robert Hertel ◽  
...  
Keyword(s):  
Solanum Tuberosum ◽  
Plant Growth ◽  
Complete Genome ◽  
Solanum Tuberosum L ◽  
Plant Growth Promoting Rhizobacteria ◽  
Whole Genome ◽  
Genome Sequences ◽  
Content Type ◽  
Plant Growth Promoting ◽  
Growth Promoting

We present here the complete genome sequences of plant growth-promoting Klebsiella sp. strain MPUS7, Serratia sp. strain NGAS9, and Citrobacter sp. strain LUTT5, isolated from rhizosphere soils and tubers of potato (Solanum tuberosum L.) plants growing in the northern and southern highlands of Tanzania.

scholarly journals Whole-Genome Sequences of Two Closely Related Bacteria, Actinomyces sp. Strain Chiba101 and Actinomyces denticolens DSM 20671T

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Yu Kanesaki ◽  
Taichiro Ishige ◽  
Yuriko Sekigawa ◽  
Tomoko Kobayashi ◽  
Yasushi Torii ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Genome Sequences ◽  
High Quality ◽  
Content Type

ABSTRACT Actinomyces sp. strain Chiba101, isolated from an arthritic leg joint of a pig raised in Japan, is a bacterium closely related to Actinomyces denticolens. Here, we deciphered the complete genome sequence of Actinomyces sp. Chiba101 and the high-quality draft genome sequence of A. denticolens DSM 20671T.

scholarly journals Complete Genome Sequence of the Pyrene-Degrading Bacterium Cycloclasticus sp. Strain P1

2012 ◽  
Vol 194 (23) ◽  
pp. 6677-6677 ◽  
Author(s):  
Qiliang Lai ◽  
Weiwei Li ◽  
Baojiang Wang ◽  
Zhiwei Yu ◽  
Zongze Shao
Keyword(s):  
Polycyclic Aromatic Hydrocarbon ◽  
Aromatic Hydrocarbon ◽  
Complete Genome Sequence ◽  
Deep Sea ◽  
Complete Genome ◽  
Content Type ◽  
Degrading Bacterium ◽  
The Pacific ◽  
Polycyclic Aromatic ◽  
The Pacific Ocean

ABSTRACTCycloclasticussp. strain P1 was isolated from deep-sea sediments of the Pacific Ocean and characterized as a unique bacterium in the degradation of pyrene, a four-ring polycyclic aromatic hydrocarbon (PAH). Here we report the complete genome of P1 and genes associated with PAH degradation.

Prospects for agriculture in 2017

2016 ◽  
Keyword(s):  
Pacific Ocean ◽  
El Nino ◽  
Extreme Weather ◽  
Extreme Weather Events ◽  
Content Type ◽  
Weather Events ◽  
The Pacific ◽  
Weather Phenomenon ◽  
Global Agriculture ◽  
The Pacific Ocean

Subject Prospects for agriculture in 2017. Significance The El Nino weather phenomenon, the heating of the Pacific Ocean, experienced through 2015 and 2016 was one of the strongest recorded, causing extreme weather events and decreasing global agriculture production. Next year promises a departure.

scholarly journals Paracoccus sediminis sp. nov., isolated from Pacific Ocean marine sediment

2014 ◽  
Vol 64 (Pt_8) ◽  
pp. 2512-2516 ◽  
Author(s):  
Jie Pan ◽  
Cong Sun ◽  
Xin-Qi Zhang ◽  
Ying-Yi Huo ◽  
Xu-Fen Zhu ◽  
...  
Keyword(s):  
Pacific Ocean ◽  
Marine Sediment ◽  
Type Species ◽  
Optimal Growth ◽  
Major Fatty Acid ◽  
Rrna Gene ◽  
Content Type ◽  
Link Type ◽  
The Pacific ◽  
The Pacific Ocean

Strain CMB17T was a short rod-shaped bacterium isolated from marine sediment of the Pacific Ocean. Cells were Gram-stain-negative and non-motile. Optimal growth occurred at 25–30 °C, pH 6.5–7 and 0.5–1 % (w/v) NaCl. The major fatty acid was C18 : 1ω7c (87.59 %), and ubiquinone-10 was detected as the only isoprenoid quinone. The DNA G+C content of the genomic DNA was 62.2 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain CMB17T is most closely related to Paracoccus stylophorae KTW-16T (96.7 %), P. solventivorans DSM 6637T (96.4 %) and P. saliphilus YIM 90738T (96.4 %). Based on phenotypic, genotypic and phylogenetic characteristics, strain CMB17T is proposed to represent a novel species, denominated Paracoccus sediminis sp. nov. (type strain CMB17T = JCM 18467T = DSM 26170T = CGMCC 1.12681T).

scholarly journals Genome Sequence of Geothermobacter sp. Strain HR-1, an Iron Reducer from the Lō‘ihi Seamount, Hawai’i

2018 ◽  
Vol 6 (21) ◽  
Author(s):  
Hillary Smith ◽  
Karla Abuyen ◽  
Jason Tremblay ◽  
Pratixaben Savalia ◽  
Ileana Pérez-Rodríguez ◽  
...  
Keyword(s):  
Pacific Ocean ◽  
Genome Sequence ◽  
Content Type ◽  
The Pacific ◽  
The Pacific Ocean

ABSTRACT Geothermobacter sp. strain HR-1 was isolated from the Lō‘ihi Seamount vent system in the Pacific Ocean at a depth of 1,000 m. Reported here is its 3.84-Mb genome sequence.

scholarly journals Complete Genome Sequences of 10 Yersinia pseudotuberculosis Isolates Recovered from Wild Boars in Germany

2018 ◽  
Vol 6 (19) ◽  
Author(s):  
Marie Reinhardt ◽  
Jens A. Hammerl ◽  
Stefan Hertwig
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Complete Genome ◽  
Yersinia Pseudotuberculosis ◽  
Draft Genome ◽  
Whole Genome ◽  
Genome Sequences ◽  
Content Type ◽  
Wild Boars ◽  
Human Infections

ABSTRACT We report here the draft genome sequences of 10 Yersinia pseudotuberculosis isolates recovered from tonsils of wild boars hunted between 2015 and 2016 in Germany. Whole-genome sequencing and bioinformatic analyses were performed to assess the diversity of Y. pseudotuberculosis , which may result in human infections caused by the consumption of game meat.

scholarly journals Complete Genome Sequences of Two Persicivirga Bacteriophages, P12024S and P12024L

2012 ◽  
Vol 86 (16) ◽  
pp. 8907-8908 ◽  
Author(s):  
Ilnam Kang ◽  
Hani Jang ◽  
Jang-Cheon Cho
Keyword(s):  
Complete Genome ◽  
Marine Environments ◽  
Genome Sequences ◽  
Content Type ◽  
Bacterial Phyla ◽  
Coastal Seawater ◽  
Genome Databases

The phylumBacteroidetesis one of the major bacterial phyla in marine environments, where bacteriophages are highly abundant. Bacteriophages infecting members of the phylumBacteroidetes, however, have not been well represented in public genome databases. Here we announce the genome sequences of two bacteriophages, P12024S and P12024L, that were isolated from coastal seawater and lytically infectPersicivirgasp. IMCC12024, a marineBacteroidetes bacterium.

scholarly journals Complete Whole-Genome Sequences of Two Raoultella terrigena Strains, NCTC 13097 and NCTC 13098, Isolated from Human Cases

2019 ◽  
Vol 8 (27) ◽  
Author(s):  
Mohammed-Abbas Fazal ◽  
Sarah Alexander ◽  
Nicholas E. Grayson ◽  
Ana Deheer-Graham ◽  
Karen Oliver ◽  
...  
Keyword(s):  
Complete Genome ◽  
Bacterial Species ◽  
Aquatic Environments ◽  
Whole Genome ◽  
Genome Sequences ◽  
Content Type ◽  
Clinical Strains ◽  
Opportunistic Disease ◽  
Sporadic Cases ◽  
Raoultella Terrigena

ABSTRACT Raoultella terrigena is a bacterial species associated with soil and aquatic environments; however, sporadic cases of opportunistic disease in humans have been reported. Here, we report the first two complete genome sequences from clinical strains isolated from human sources that have been deposited in the National Collection of Type Cultures (NCTC).

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