scholarly journals Draft Genome Sequence of Methanothermobacter thermautotrophicus WHS, a Thermophilic Hydrogenotrophic Methanogen from Washburn Hot Springs in Yellowstone National Park, USA

2021 ◽  
Vol 10 (5) ◽  
Author(s):  
Luke J. McKay ◽  
Korinne B. Klingelsmith ◽  
Adam M. Deutschbauer ◽  
William P. Inskeep ◽  
Matthew W. Fields
Keyword(s):  
Carbon Dioxide ◽  
Genome Sequence ◽  
Yellowstone National Park ◽  
National Park ◽  
Hot Springs ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Hydrogenotrophic Methanogen ◽  
Methanothermobacter Thermautotrophicus

ABSTRACT A thermophilic methanogen was enriched in coculture from Washburn Hot Springs (Yellowstone National Park, USA), grown on carbon dioxide and hydrogen, and subsequently sequenced. The reconstructed 1.65-Mb genome sequence for Methanothermobacter thermautotrophicus WHS contributes to our understanding of hydrogenotrophic, CO2-reducing methanogenesis in geothermal ecosystems.

scholarly journals Draft Genome Sequence of Bacillus altitudinis YNP4-TSU, Isolated from Yellowstone National Park

2017 ◽  
Vol 5 (28) ◽  
Author(s):  
Joshua A. OHair ◽  
Hui Li ◽  
Santosh Thapa ◽  
Matthew Scholz ◽  
Suping Zhou
Keyword(s):  
Genome Sequence ◽  
Yellowstone National Park ◽  
National Park ◽  
Hot Springs ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Bacillus Altitudinis

ABSTRACT Undisturbed hot springs inside Yellowstone National Park remain a dynamic biome for novel cellulolytic thermophiles. We report here the draft genome sequence of one of these isolates, Bacillus altitudinis YNP4-TSU.

scholarly journals Draft Genome Sequence of Bacillus licheniformis Strain YNP1-TSU Isolated from Whiterock Springs in Yellowstone National Park

2017 ◽  
Vol 5 (9) ◽  
Author(s):  
Joshua A. O'Hair ◽  
Hui Li ◽  
Santosh Thapa ◽  
Matthew B. Scholz ◽  
Suping Zhou
Keyword(s):  
Genome Sequence ◽  
Bacillus Licheniformis ◽  
Yellowstone National Park ◽  
National Park ◽  
Draft Genome ◽  
Biofuel Production ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Sequence Contigs ◽  
Automated Annotation

ABSTRACT Novel cellulolytic microorganisms can potentially influence second-generation biofuel production. This paper reports the draft genome sequence of Bacillus licheniformis strain YNP1-TSU, isolated from hydrothermal-vegetative microbiomes inside Yellowstone National Park. The assembled sequence contigs predicted 4,230 coding genes, 66 tRNAs, and 10 rRNAs through automated annotation.

scholarly journals Draft Genome Sequence of Strain B 225, an Iron-Depositing Isolate of the Genus Novosphingobium

2018 ◽  
Vol 6 (15) ◽  
pp. e00325-18
Author(s):  
Burga Braun ◽  
Sven Künzel ◽  
Ulrich Szewzyk
Keyword(s):  
Genome Sequence ◽  
National Park ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type

ABSTRACT Here, we report the draft genome sequence of Novosphingobium sp. strain B 225, an iron-depositing bacterium isolated from a phenazone-amended naturally grown biofilm. This biofilm was grown in the Unteres Odertal National Park, Germany. Illumina NextSeq sequencing was used to determine the genome of the strain.

scholarly journals Draft Genome Sequence of Deinococcus sp. Strain S9, Isolated from Microbial Mat Deposits of Hot Springs Located atop the Himalayan Ranges at Manikaran, India

2019 ◽  
Vol 8 (28) ◽  
Author(s):  
Chandni Talwar ◽  
Amit Kumar Singh ◽  
Durgesh Narain Singh ◽  
Shekhar Nagar ◽  
Yogendra Singh ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Hot Springs ◽  
Draft Genome ◽  
Gc Content ◽  
Thermophilic Bacterium ◽  
Himachal Pradesh ◽  
Microbial Mat ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Moderately Thermophilic

Here, we present the draft genome sequence of Deinococcus sp. strain S9, a red-pigmented and moderately thermophilic bacterium isolated from microbial mat deposits around the hot springs at Manikaran, Himachal Pradesh, India. The draft genome (3.34 Mb) contains 101 contigs with an average GC content of 66.4%.

scholarly journals Draft Genome Sequence of Chloracidobacterium sp. CP2_5A, a Phototrophic Member of the Phylum Acidobacteria Recovered from a Japanese Hot Spring

2017 ◽  
Vol 5 (40) ◽  
Author(s):  
Lewis M. Ward ◽  
Shawn E. McGlynn ◽  
Woodward W. Fischer
Keyword(s):  
Genome Sequence ◽  
Yellowstone National Park ◽  
National Park ◽  
Hot Spring ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
A Genome

ABSTRACT The phylum Acidobacteria contains a single known phototrophic member, Chloracidobacterium thermophilum, which was recovered from a hot spring metagenome from Yellowstone National Park. Here, we expand the diversity of the genus Chloracidobacterium with a genome recovered from a hot spring in Japan, extending the known range of this lineage to a new continent.

scholarly journals Draft Genome Sequence of a New Methanobacterium Strain Potentially Resistant to Bile Salts, Isolated from Deer Feces

2020 ◽  
Vol 9 (32) ◽  
Author(s):  
Heleen T. Ouboter ◽  
Stefanie Berger ◽  
Erbil Güngör ◽  
Mike S. M. Jetten ◽  
Cornelia U. Welte
Keyword(s):  
Salt Tolerance ◽  
Bile Salt ◽  
Genome Sequence ◽  
Bile Salts ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Bile Salt Hydrolase ◽  
High Quality ◽  
Content Type ◽  
Hydrogenotrophic Methanogen

ABSTRACT We present the high-quality draft genome of Methanobacterium subterraneum DF, a hydrogenotrophic methanogen that was isolated from deer feces. This organism has potentially been overlooked in previous studies. Interestingly, its genome encoded bile salt hydrolase, a crucial enzyme for bile salt tolerance that is found in gut organisms.

scholarly journals Draft Genome Sequence of Urease-Producing Pseudorhodobacter sp. Strain E13, Isolated from the Yellow Sea in Gunsan, South Korea

2019 ◽  
Vol 8 (23) ◽  
Author(s):  
Si Chul Kim ◽  
Hyo Jung Lee
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Yellow Sea ◽  
Draft Genome ◽  
The Yellow Sea ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Gram Negative ◽  
Content Type

Here, we report the draft genome sequence of Pseudorhodobacter sp. strain E13, a Gram-negative, aerobic, nonflagellated, and rod-shaped bacterium which was isolated from the Yellow Sea in South Korea. The assembled genome sequence is 3,878,578 bp long with 3,646 protein-coding sequences in 159 contigs.

scholarly journals Draft Genome Sequence of a Vibrio harveyi Strain Associated with Vibriosis in Pacific White Shrimp (Litopenaeus vannamei)

2017 ◽  
Vol 5 (7) ◽  
Author(s):  
Emille Moreno ◽  
Marci Parks ◽  
Lee J. Pinnell ◽  
James J. Tallman ◽  
Jeffrey W. Turner
Keyword(s):  
Genome Sequence ◽  
Litopenaeus Vannamei ◽  
Vibrio Harveyi ◽  
Draft Genome ◽  
Penaeid Shrimp ◽  
Pacific White Shrimp ◽  
Draft Genome Sequence ◽  
White Shrimp ◽  
Content Type ◽  
Future Studies

ABSTRACT Vibrio harveyi is a Gram-negative bacterium associated with vibriosis in penaeid shrimp. Here, we report the draft genome sequence of a V. harveyi strain isolated from Pacific white shrimp (Litopenaeus vannamei) during a vibriosis outbreak. The availability of this genome will aid future studies of vibriosis in shrimp aquaculture.

scholarly journals Draft Genome Sequence of Pantoea sp. Strain A4, a Rafflesia-Associated Bacterium That ProducesN-Acylhomoserine Lactones as Quorum-Sensing Molecules

2012 ◽  
Vol 194 (23) ◽  
pp. 6610-6610 ◽  
Author(s):  
Kar-Wai Hong ◽  
Han Ming Gan ◽  
Siew-Moon Low ◽  
Patrick Kok Yuen Lee ◽  
Yee-Meng Chong ◽  
...  
Keyword(s):  
Quorum Sensing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Negative Bacterium ◽  
Gram Negative ◽  
Content Type ◽  
First Time

ABSTRACTPantoeasp. strain A4 is a Gram-negative bacterium isolated from theRafflesiaflower. We present here, for the first time, the genome sequence ofRafflesia-associatedPantoeasp. strain A4, which exhibited quorum-sensing activity.

scholarly journals Draft Genome Sequence of the Iridescent Marine Bacterium Cellulophaga lytica CECT 8139

2017 ◽  
Vol 5 (36) ◽  
Author(s):  
Maylis Chapelais-Baron ◽  
Isabelle Goubet ◽  
Eric Duchaud ◽  
Eric Rosenfeld
Keyword(s):  
Genome Sequence ◽  
Marine Bacterium ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Physiological Properties

ABSTRACT Some species of the genus Cellulophaga have been reported as having biotechnological interests and noteworthy physiological properties. We report here the draft genome sequence of Cellulophaga lytica CECT 8139, a bacterium that produces an intensely iridescent colony biofilm on agar surfaces.

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