scholarly journals Metagenome-Assembled Genome Sequences of Raphidiopsis raciborskii and Planktothrix agardhii from a Cyanobacterial Bloom in Kissena Lake, New York, USA

2021 ◽  
Vol 10 (2) ◽  
Author(s):  
Robbie M. Martin ◽  
Michael Kausch ◽  
Kimarie Yap ◽  
John D. Wehr ◽  
Gregory L. Boyer ◽  
...  
Keyword(s):  
New York ◽  
Cyanobacterial Bloom ◽  
Genome Sequences ◽  
High Quality ◽  
Planktothrix Agardhii ◽  
Content Type ◽  
Fresh Waters

ABSTRACT Raphidiopsis raciborskii and Planktothrix agardhii are filamentous, potentially toxin-producing cyanobacteria that form nuisance blooms in fresh waters. Here, we report high-quality metagenome-assembled genome sequences of R. raciborskii and P. agardhii collected from a bloom in Kissena Lake, New York.

scholarly journals High-Quality Complete Genome Sequences of Three Pseudomonas aeruginosa Isolates Retrieved from Patients Hospitalized in Intensive Care Units

2019 ◽  
Vol 8 (9) ◽  
Author(s):  
Bárbara Magalhães ◽  
Laurence Senn ◽  
Dominique S. Blanc
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Intensive Care ◽  
Intensive Care Units ◽  
Genome Sequences ◽  
High Quality ◽  
Gram Negative ◽  
Content Type ◽  
Hospital Acquired Infections ◽  
Hospital Acquired ◽  
High Quality Genome

Pseudomonas aeruginosa is one of the major Gram-negative pathogens responsible for hospital-acquired infections. Here, we present high-quality genome sequences of isolates from three P. aeruginosa genotypes retrieved from patients hospitalized in intensive care units.

scholarly journals Whole-Genome Sequences of Two Closely Related Bacteria, Actinomyces sp. Strain Chiba101 and Actinomyces denticolens DSM 20671T

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Yu Kanesaki ◽  
Taichiro Ishige ◽  
Yuriko Sekigawa ◽  
Tomoko Kobayashi ◽  
Yasushi Torii ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Genome Sequences ◽  
High Quality ◽  
Content Type

ABSTRACT Actinomyces sp. strain Chiba101, isolated from an arthritic leg joint of a pig raised in Japan, is a bacterium closely related to Actinomyces denticolens. Here, we deciphered the complete genome sequence of Actinomyces sp. Chiba101 and the high-quality draft genome sequence of A. denticolens DSM 20671T.

scholarly journals High-Quality Whole-Genome Sequences for 77 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing

2018 ◽  
Vol 6 (19) ◽  
Author(s):  
Pooja N. Patel ◽  
Rebecca L. Lindsey ◽  
Lisley Garcia-Toledo ◽  
Lori A. Rowe ◽  
Dhwani Batra ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Shiga Toxin ◽  
Foodborne Pathogen ◽  
Severe Illness ◽  
Whole Genome ◽  
Genome Sequences ◽  
Pacbio Sequencing ◽  
High Quality ◽  
Content Type ◽  
Sequencing Platform

ABSTRACT Shiga toxin-producing Escherichia coli (STEC) is an enteric foodborne pathogen that can cause mild to severe illness. Here, we report the availability of high-quality whole-genome sequences for 77 STEC strains generated using the PacBio sequencing platform.

scholarly journals High-Quality Draft Genome Sequences of Three Cyanobacteria Isolated from the Limestone Walls of the Old Cathedral of Coimbra, Portugal

2020 ◽  
Vol 9 (26) ◽  
Author(s):  
Fabiana Soares ◽  
João Trovão ◽  
Catarina Coelho ◽  
Inês Costa ◽  
Nuno Mesquita ◽  
...  
Keyword(s):  
Draft Genome ◽  
World Heritage Site ◽  
The Novel ◽  
Genome Sequences ◽  
High Quality ◽  
Content Type ◽  
Heritage Site ◽  
Unesco World Heritage Site ◽  
Novel Taxa ◽  
High Quality Genome

ABSTRACT The recently described species Myxacorys almedinensis and two other cyanobacteria were isolated from the limestone walls of the Old Cathedral of Coimbra, Portugal (UNESCO World Heritage Site). The high-quality genome sequences presented here will be essential for characterization purposes and description of the novel taxa.

scholarly journals High-Quality Whole-Genome Sequences for 59 HistoricalShigellaStrains Generated with PacBio Sequencing

2018 ◽  
Vol 6 (15) ◽  
pp. e00282-18 ◽  
Author(s):  
Justin Kim ◽  
Rebecca L. Lindsey ◽  
Lisley Garcia-Toledo ◽  
Vladimir N. Loparev ◽  
Lori A. Rowe ◽  
...  
Keyword(s):  
Enteric Pathogens ◽  
Whole Genome ◽  
Genome Sequences ◽  
Pacbio Sequencing ◽  
High Quality ◽  
Content Type

ABSTRACTShigellaspp. are enteric pathogens that cause shigellosis. We report here the high-quality whole-genome sequences of 59 historicalShigellastrains that represent the four species and a variety of serotypes.

scholarly journals Complete Genome Sequences and Transmission Electron Micrographs of Listeria Phages of the Genus Homburgvirus

2019 ◽  
Vol 8 (41) ◽  
Author(s):  
Lauren K. Hudson ◽  
Tracey L. Peters ◽  
Yaxiong Song ◽  
Thomas G. Denes
Keyword(s):  
New York ◽  
Listeria Monocytogenes ◽  
Electron Micrographs ◽  
Complete Genome ◽  
Foodborne Pathogen ◽  
Dairy Farms ◽  
Transmission Electron Micrographs ◽  
Genome Sequences ◽  
Content Type ◽  
Transmission Electron

Bacteriophages that infect the foodborne pathogen Listeria monocytogenes were previously isolated from New York dairy farms. The complete genome sequences for three of these Listeria phages, with genome sizes of 64.6 to 65.7 kb, are presented here. Listeria phages LP-010, LP-013, and LP-031-2 are siphoviruses that belong to the genus Homburgvirus.

scholarly journals High-Quality Draft Genome Sequences of Eight Bacteria Isolated from Fungus Gardens Grown by Trachymyrmex septentrionalis Ants

2018 ◽  
Vol 7 (2) ◽  
Author(s):  
Sarah Kopac ◽  
Hannah Beatty ◽  
Philip Gialopsos ◽  
Marcel Huntemann ◽  
Alicia Clum ◽  
...  
Keyword(s):  
Secondary Metabolites ◽  
Food Source ◽  
Draft Genome ◽  
Genome Sequences ◽  
High Quality ◽  
Content Type ◽  
Symbiotic Fungus

For their food source, Trachymyrmex septentrionalis ants raise symbiotic fungus gardens that contain bacteria whose functions are poorly understood. Here, we report the genome sequences of eight bacteria isolated from these fungus gardens to better describe the ecology of these strains and their potential to produce secondary metabolites in this niche.

scholarly journals Draft Genome Sequences of Two Enteroinvasive Escherichia coli Strains Representative of Major Enteroinvasive E. coli Clades

2021 ◽  
Vol 10 (23) ◽  
Author(s):  
Michael J. Sikorski ◽  
Tracy H. Hazen ◽  
Gopi Vyas ◽  
Jane M. Michalski ◽  
David A. Rasko
Keyword(s):  
Escherichia Coli ◽  
Draft Genome ◽  
Genomic Data ◽  
Genome Sequences ◽  
High Quality ◽  
Content Type ◽  
E Coli ◽  
Clinical Illness

There are six described pathotypes of Escherichia coli that cause significant clinical illness in humans. Enteroinvasive E. coli (EIEC) strains have been shown to be separated into three phylogenomic clades. To add to a limited body of EIEC genomic data, we report two high-quality draft genomes representing different EIEC phylogenomic clades.

scholarly journals Complete and Circularized Genome Sequences of 17 Xanthomonas Strains Responsible for Common Bacterial Blight of Bean

2021 ◽  
Vol 10 (31) ◽  
Author(s):  
Martial Briand ◽  
Mylène Ruh ◽  
Armelle Darrasse ◽  
Marie-Agnès Jacques ◽  
Nicolas W. G. Chen
Keyword(s):  
Bacterial Blight ◽  
Plant Pathogens ◽  
Common Bacterial Blight ◽  
Xanthomonas Citri ◽  
Genome Sequences ◽  
High Quality ◽  
Short Read ◽  
Content Type ◽  
Short Read Sequencing ◽  
Quality Material

We report the complete and circularized genome sequences of 17 strains of Xanthomonas citri pv. fuscans and Xanthomonas phaseoli pv. phaseoli, which cause common bacterial blight of bean. These new assemblies combining PacBio and short-read sequencing methods provide high-quality material for studying the evolution of these plant pathogens.

scholarly journals Whole-Genome Sequences of Burkholderia pseudomallei Isolates Exhibiting Decreased Meropenem Susceptibility

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Erin P. Price ◽  
Melissa Laird Smith ◽  
Ellen E. Paxinos ◽  
Luke J. Tallon ◽  
Lisa Sadzewicz ◽  
...  
Keyword(s):  
Burkholderia Pseudomallei ◽  
Quality Standard ◽  
Resistance Mechanisms ◽  
Whole Genome ◽  
Genome Sequences ◽  
High Quality ◽  
Content Type ◽  
High Quality Standard

ABSTRACT We report here paired isogenic Burkholderia pseudomallei genomes obtained from three patients receiving intravenous meropenem for melioidosis treatment, with post-meropenem isolates developing decreased susceptibility. Two genomes were finished, and four were drafted to improved high-quality standard. These genomes will be used to identify meropenem resistance mechanisms in B. pseudomallei.

Sign in / Sign up

Export Citation Format

Share Document