scholarly journals Import of Palmer amaranth (Amaranthus palmeri S. Wats.) seed with sweet potato (Ipomea batatas (L.) Lam) slips

2021 ◽  
Author(s):  
Eric Robert Page ◽  
Robert E. Nurse ◽  
Sydney Meloche ◽  
Kerry Bosveld ◽  
Christopher Grainger ◽  
...  
Keyword(s):  
Sweet Potato ◽  
Arable Land ◽  
The United States ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Nucleotide Polymorphisms ◽  
Single Nucleotide ◽  
Ipomea Batatas ◽  
Amaranth Seed ◽  
Species Specific

Palmer amaranth is one of the most economically important and widespread weeds of arable land in the United States. Although no populations are currently known to exist in Canada, its distribution has expanded northward such that it is present in many of the States bordering Canada and multiple pathways exist for its introduction. In this short communication we report on the transport of viable Palmer amaranth seed on imported sweet potato slips. A reproductive pair of Palmer amaranth seedlings were identified from soil accompanying imported sweet potato slips in 2018. Identification was confirmed using species specific single nucleotide polymorphisms.

Palmer Amaranth (Amaranthus palmeri) Control by Glufosinate plus Fluometuron Applied Postemergence to WideStrike®Cotton

2013 ◽  
Vol 27 (2) ◽  
pp. 291-297 ◽  
Author(s):  
Kelly A. Barnett ◽  
A. Stanley Culpepper ◽  
Alan C. York ◽  
Lawrence E. Steckel
Keyword(s):  
United States ◽  
Weed Control ◽  
Acetolactate Synthase ◽  
The United States ◽  
Palmer Amaranth ◽  
Effective Control ◽  
Yield Response ◽  
Amaranthus Palmeri ◽  
Cotton Yield ◽  
Cotton Cultivar

Glyphosate-resistant (GR) weeds, especially GR Palmer amaranth, are very problematic for cotton growers in the Southeast and Midsouth regions of the United States. Glufosinate can control GR Palmer amaranth, and growers are transitioning to glufosinate-based systems. Palmer amaranth must be small for consistently effective control by glufosinate. Because this weed grows rapidly, growers are not always timely with applications. With widespread resistance to acetolactate synthase-inhibiting herbicides, growers have few herbicide options to mix with glufosinate to improve control of larger weeds. In a field study using a WideStrike®cotton cultivar, we evaluated fluometuron at 140 to 1,120 g ai ha−1mixed with the ammonium salt of glufosinate at 485 g ae ha−1for control of GR Palmer amaranth 13 and 26 cm tall. Standard PRE- and POST-directed herbicides were included in the systems. Glufosinate alone injured the WideStrike® cotton less than 10%. Fluometuron increased injury up to 25% but did not adversely affect yield. Glufosinate controlled 13-cm Palmer amaranth at least 90%, and there was no improvement in weed control nor a cotton yield response to fluometuron mixed with glufosinate. Palmer amaranth 26 cm tall was controlled only 59% by glufosinate. Fluometuron mixed with glufosinate increased control of the larger weeds up to 28% and there was a trend for greater yields. However, delaying applications until weeds were 26 cm reduced yield 22% relative to timely application. Our results suggest fluometuron mixed with glufosinate may be of some benefit when attempting to control large Palmer amaranth. However, mixing fluometuron with glufosinate is not a substitute for a timely glufosinate application.

scholarly journals Sex-specific markers for waterhemp (Amaranthus tuberculatus) and Palmer amaranth (Amaranthus palmeri)

Weed Science ◽  
2019 ◽  
Vol 67 (4) ◽  
pp. 412-418 ◽  
Author(s):  
Jacob S. Montgomery ◽  
Ahmed Sadeque ◽  
Darci A. Giacomini ◽  
Patrick J. Brown ◽  
Patrick J. Tranel
Keyword(s):  
Crop Production ◽  
Genetic Basis ◽  
The United States ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Data Set ◽  
Amaranthus Tuberculatus ◽  
Primer Sets ◽  
Male Specific ◽  
Specific Sequences

AbstractWaterhemp [Amaranthus tuberculatus (Moq.) J. D. Sauer] and Palmer amaranth (Amaranthus palmeri S. Watson) are troublesome weeds of row-crop production in the United States. Their dioecious reproductive systems ensure outcrossing, facilitating rapid evolution and distribution of resistances to multiple herbicides. Little is known, however, about the genetic basis of dioecy in Amaranthus species. In this work, we use restriction site–associated DNA sequencing (RAD-Seq) to investigate the genetic basis of sex determination in A. tuberculatus and A. palmeri. For each species, approximately 200 plants of each sex were sampled and used to create RAD-Seq libraries. The resulting libraries were separately bar-coded and then pooled for sequencing with the Illumina platform, yielding millions of 64-bp reads. These reads were analyzed to identify sex-specific and sex-biased sequences. We identified 345 male-specific sequences from the A. palmeri data set and 2,754 male-specific sequences in A. tuberculatus. An unexpected 723 female-specific sequences were identified in a subset of the A. tuberculatus females; subsequent research, however, indicated female specificity of these markers was limited to the population from which they were identified. Primer sets designed to specifically amplify male-specific sequences were tested for accuracy on multiple, geographically distinct populations of A. tuberculatus and A. palmeri, as well as other Amaranthus species. Two primer sets for A. palmeri and four primer sets for A. tuberculatus were each able to distinguish between male and female plants with at least 95% accuracy. In the near term, sex-specific markers will be useful to the A. tuberculatus and A. palmeri research communities (e.g., to predict sex for crossing experiments). In the long-term, this research will provide the foundational tools for detailed investigations into the molecular biology and evolution of dioecy in weedy Amaranthus species.

scholarly journals Validation of two multiplex real-time PCR assays based on single nucleotide polymorphisms of the HA1 gene of equine influenza A virus in order to differentiate between clade 1 and clade 2 Florida sublineage isolates

2019 ◽  
Vol 31 (1) ◽  
pp. 137-141 ◽  
Author(s):  
Hanna Brister ◽  
Samantha M. Barnum ◽  
Stephanie Reedy ◽  
Thomas M. Chambers ◽  
Nicola Pusterla
Keyword(s):  
United States ◽  
Influenza A Virus ◽  
Real Time Pcr ◽  
Influenza A ◽  
The United States ◽  
Nucleotide Polymorphisms ◽  
Single Nucleotide ◽  
Equine Influenza ◽  
Clade 1 ◽  
Ha1 Gene

We validated 2 multiplex real-time PCR (rtPCR) assays based on single nucleotide polymorphisms (SNPs) of the hemagglutinin-1 ( HA1) gene of H3N8 equine influenza A virus (EIV) to determine clade affiliation of prototype and field isolates. Initial validation of the 2 multiplex rtPCR assays (SNP1 and SNP2) was performed using nucleic acid from 14 EIV Florida sublineage clade 1 and 2 prototype strains. We included in our study previously banked EIV rtPCR-positive nasal secretions from 341 horses collected across the United States in 2012–2017 to determine their clade affiliation. All 14 EIV prototype strains were identified correctly as either Florida sublineage clade 1 or clade 2 using the 2 SNP target positions. Of 341 EIV rtPCR-positive samples, 337 (98.8%) and 4 (1.2%) isolates were classified as belonging to clade 1 and 2 Florida sublineage EIV, respectively. All clade 1 Florida sublineage EIV strains were detected in domestic horses, three clade 2 Florida sublineage EIV strains originated from horses recently imported into the United States, and one clade 2 Florida sublineage EIV strain originated from a healthy horse recently vaccinated with a modified-live intranasal EIV vaccine containing the American lineage strain A/eq/Kentucky/1991. EIV Florida sublineage clade differentiation using a fast and reliable multiplex rtPCR platform will help monitor the introduction of clade 2 Florida sublineage EIV strains into North America via international transportation.

Management of glyphosate-resistant Palmer amaranth (Amaranthus palmeri) in 2,4-D–, glufosinate-, and glyphosate-resistant soybean

2020 ◽  
pp. 1-8
Author(s):  
Chandrima Shyam ◽  
Parminder S. Chahal ◽  
Amit J. Jhala ◽  
Mithila Jugulam
Keyword(s):  
United States ◽  
Field Experiments ◽  
The United States ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Soybean Yield ◽  
Chlorimuron Ethyl ◽  
Density And Biomass ◽  
Herbicide Programs ◽  
Biomass Reduction

Abstract Glyphosate-resistant (GR) Palmer amaranth is a problematic, annual broadleaf weed in soybean production fields in Nebraska and many other states in the United States. Soybean resistant to 2,4-D, glyphosate, and glufosinate (Enlist E3TM) has been developed and was first grown commercially in 2019. The objectives of this research were to evaluate the effect of herbicide programs applied PRE, PRE followed by (fb) late-POST (LPOST), and early-POST (EPOST) fb LPOST on GR Palmer amaranth control, density, and biomass reduction, soybean injury, and yield. Field experiments were conducted near Carleton, NE, in 2018, and 2019 in a grower’s field infested with GR Palmer amaranth in 2,4-D–, glyphosate-, and glufosinate-resistant soybean. Sulfentrazone + cloransulam-methyl, imazethapyr + saflufenacil + pyroxasulfone, and chlorimuron ethyl + flumioxazin + metribuzin applied PRE provided 84% to 97% control of GR Palmer amaranth compared with the nontreated control 14 d after PRE. Averaged across herbicide programs, PRE fb 2,4-D and/or glufosinate, and sequential application of 2,4-D or glufosinate applied EPOST fb LPOST resulted in 92% and 88% control of GR Palmer amaranth, respectively, compared with 62% control with PRE-only programs 14 d after LPOST. Reductions in Palmer amaranth biomass followed the same trend; however, Palmer amaranth density was reduced 98% in EPOST fb LPOST programs compared with 91% reduction in PRE fb LPOST and 76% reduction in PRE-only programs. PRE fb LPOST and EPOST fb LPOST programs resulted in an average soybean yield of 4,478 and 4,706 kg ha−1, respectively, compared with 3,043 kg ha−1 in PRE-only programs. Herbicide programs evaluated in this study resulted in no soybean injury. The results of this research illustrate that herbicide programs are available for the management of GR Palmer amaranth in 2,4-D–, glyphosate-, and glufosinate-resistant soybean.

Palmer Amaranth (Amaranthus palmeri) Management in Dicamba-Resistant Cotton

2015 ◽  
Vol 29 (4) ◽  
pp. 758-770 ◽  
Author(s):  
Charles W. Cahoon ◽  
Alan C. York ◽  
David L. Jordan ◽  
Wesley J. Everman ◽  
Richard W. Seagroves ◽  
...  
Keyword(s):  
United States ◽  
North Carolina ◽  
Field Experiment ◽  
Acetolactate Synthase ◽  
The United States ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Cotton Yield ◽  
Herbicide Resistant

Cotton growers rely heavily upon glufosinate and various residual herbicides applied preplant, PRE, and POST to control Palmer amaranth resistant to glyphosate and acetolactate synthase-inhibiting herbicides. Recently deregulated in the United States, cotton resistant to dicamba, glufosinate, and glyphosate (B2XF cotton) offers a new platform for controlling herbicide-resistant Palmer amaranth. A field experiment was conducted in North Carolina and Georgia to determine B2XF cotton tolerance to dicamba, glufosinate, and glyphosate and to compare Palmer amaranth control by dicamba to a currently used, nondicamba program in both glufosinate- and glyphosate-based systems. Treatments consisted of glyphosate or glufosinate applied early POST (EPOST) and mid-POST (MPOST) in a factorial arrangement of treatments with seven dicamba options (no dicamba, PRE, EPOST, MPOST, PRE followed by [fb] EPOST, PRE fb MPOST, and EPOST fb MPOST) and a nondicamba standard. The nondicamba standard consisted of fomesafen PRE, pyrithiobac EPOST, and acetochlor MPOST. Dicamba caused no injury when applied PRE and only minor, transient injury when applied POST. At time of EPOST application, Palmer amaranth control by dicamba or fomesafen applied PRE, in combination with acetochlor, was similar and 13 to 17% greater than acetochlor alone. Dicamba was generally more effective on Palmer amaranth applied POST rather than PRE, and two applications were usually more effective than one. In glyphosate-based systems, greater Palmer amaranth control and cotton yield were obtained with dicamba applied EPOST, MPOST, or EPOST fb MPOST compared with the standard herbicides in North Carolina. In contrast, dicamba was no more effective than the standard herbicides in the glufosinate-based systems. In Georgia, dicamba was as effective as the standard herbicides in a glyphosate-based system only when dicamba was applied EPOST fb MPOST. In glufosinate-based systems in Georgia, dicamba was as effective as standard herbicides only when dicamba was applied twice.

scholarly journals Singleton Sequence Type 382, an Emerging Clonal Group of Listeria monocytogenes Associated with Three Multistate Outbreaks Linked to Contaminated Stone Fruit, Caramel Apples, and Leafy Green Salad

2017 ◽  
Vol 55 (3) ◽  
pp. 931-941 ◽  
Author(s):  
Yi Chen ◽  
Yan Luo ◽  
James Pettengill ◽  
Ruth Timme ◽  
David Melka ◽  
...  
Keyword(s):  
Listeria Monocytogenes ◽  
The United States ◽  
Sequence Type ◽  
Stone Fruit ◽  
Nucleotide Polymorphisms ◽  
Outbreak Strain ◽  
Single Nucleotide ◽  
Content Type ◽  
Genomic Divergence ◽  
Singleton Sequence

ABSTRACT Three multistate outbreaks between 2014 and 2016, involving case patients in and outside the United States, were linked to stone fruit, caramel apples, and packaged leafy green salad contaminated with Listeria monocytogenes singleton sequence type 382 (ST382), a serotype IVb-v1 clone with limited genomic divergence. Isolates from these outbreaks and other ST382 isolates not associated with these outbreaks were analyzed by whole-genome sequencing (WGS) analysis. The primary differences among ST382 strains were single nucleotide polymorphisms (SNPs). WGS analysis differentiated ST382 from a clonal complex 1 outbreak strain co-contaminating the caramel apples. WGS clustered food, environmental, and clinical isolates within each outbreak, and also differentiated among the three outbreak strains and epidemiologically unrelated ST382 isolates, which were indistinguishable by pulsed-field gel electrophoresis. ST382 appeared to be an emerging clone that began to diverge from its ancestor approximately 32 years before 2016. We estimated that there was 1.29 nucleotide substitution per genome (2.94 Mbp) per year for this clone.

Evaluating Cover Crops and Herbicides for Glyphosate-Resistant Palmer Amaranth (Amaranthus palmeri) Control in Cotton

2016 ◽  
Vol 30 (2) ◽  
pp. 415-422 ◽  
Author(s):  
Matthew S. Wiggins ◽  
Robert M. Hayes ◽  
Lawrence E. Steckel
Keyword(s):  
Cover Crops ◽  
Cover Crop ◽  
The United States ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Hairy Vetch ◽  
Cereal Rye ◽  
Crimson Clover ◽  
Legume Cover Crops ◽  
Herbicide Programs

Glyphosate-resistant (GR) weeds, especially GR Palmer amaranth, are very problematic in cotton-producing areas of the midsouthern region of the United States. Growers rely heavily on PRE residual herbicides to control Palmer amaranth since few effective POST options exist. Interest in integrating high-residue cover crops with existing herbicide programs to combat GR weeds has increased. Research was conducted in 2013 and 2014 in Tennessee to evaluate GR Palmer amaranth control when integrating cover crops and PRE residual herbicides. Cereal rye, crimson clover, hairy vetch, winter wheat, and combinations of one grass plus one legume were compared with winter weeds without a cover crop followed by fluometuron or acetochlor applied PRE. Biomass of cover crops was determined prior to termination 3 wk before planting. Combinations of grass and legume cover crops accumulated the most biomass (> 3,500 kg ha−1) but by 28 d after application (DAA) the cereal rye and wheat provided the best Palmer amaranth control. Crimson clover and hairy vetch treatments had the greatest number of Palmer amaranth. These cereal and legume blends reduced Palmer amaranth emergence by half compared to non–cover-treated areas. Fluometuron and acetochlor controlled Palmer amaranth 95 and 89%, respectively, at 14 DAA and 54 and 62%, respectively, at 28 DAA. Cover crops in combination with a PRE herbicide did not adequately control Palmer amaranth.

scholarly journals Single Nucleotide Polymorphisms in the Bovine TLR2 Extracellular Domain Contribute to Breed and Species-Specific Innate Immune Functionality

2021 ◽  
Vol 12 ◽  
Author(s):  
Marie-Christine Bartens ◽  
Amanda J. Gibson ◽  
Graham J. Etherington ◽  
Federica Di Palma ◽  
Angela Holder ◽  
...  
Keyword(s):  
Single Nucleotide Polymorphisms ◽  
Bos Indicus ◽  
Full Length ◽  
Nucleotide Polymorphisms ◽  
Wild Type ◽  
Single Nucleotide ◽  
Brown Swiss ◽  
Cattle Breeds ◽  
Species Specific ◽  
Mycobacterial Antigens

Recent evidence suggests that several cattle breeds may be more resistant to infection with the zoonotic pathogen Mycobacterium bovis. Our data presented here suggests that the response to mycobacterial antigens varies in macrophages generated from Brown Swiss (BS) and Holstein Friesian (HF) cattle, two breeds belonging to the Bos taurus family. Whole genome sequencing of the Brown Swiss genome identified several potential candidate genes, in particular Toll-like Receptor-2 (TLR2), a pattern recognition receptor (PRR) that has previously been described to be involved in mycobacterial recognition. Further investigation revealed single nucleotide polymorphisms (SNP) in TLR2 that were identified between DNA isolated from cells of BS and HF cows. Interestingly, one specific SNP, H326Q, showed a different genotype frequency in two cattle subspecies, Bos (B.) taurus and Bos indicus. Cloning of the TLR2 gene and subsequent gene-reporter and chemokine assays revealed that this SNP, present in BS and Bos indicus breeds, resulted in a significantly higher response to mycobacterial antigens as well as tri-acylated lipopeptide ligands in general. Comparing wild-type and H326Q containing TLR2 responses, wild-type bovine TLR2 response showed clear, diminished mycobacterial antigen responses compared to human TLR2, however bovine TLR2 responses containing H326Q were found to be partially recovered compared to human TLR2. The creation of human:bovine TLR2 chimeras increased the response to mycobacterial antigens compared to the full-length bovine TLR2, but significantly reduced the response compared to the full-length human TLR2. Thus, our data, not only present evidence that TLR2 is a major PRR in the mammalian species-specific response to mycobacterial antigens, but furthermore, that there are clear differences between the response seen in different cattle breeds, which may contribute to their enhanced or reduced susceptibility to mycobacterial infection.

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