Intermolecular interactions between tropolone and fluoromethanes

2001 ◽  
Vol 79 (2-3) ◽  
pp. 483-499 ◽  
Author(s):  
V J MacKenzie ◽  
R P Steer

Van der Waals complexes of tropolone (TRN) with CF4, CFH3, CF2H2, and CF3H have been synthesized by expanding mixtures of TRN and the fluorinated methane (FM) in a supersonic free-jet and have been examined using laser induced fluorescence excitation spectroscopy. The sign and magnitude of the microscopic solvent shifts and the magnitude of the tunneling doublet splittings of the origin bands of each distinct complex have been determined from the LIFE spectra. These data, together with both empirical and ab initio calculations of the potential energy surfaces of the 1:1 complexes, have been used to assign the structures of the complexes and determine their approximate binding energies. Expansion of TRN with CF4 produces one identifiable 1:1 complex in which the solvent is primarily dispersively bound and lies above the TRN ring in a symmetric three-legged stool conformation. Expansion of TRN with CFH3 produces two 1:1 complexes, both primarily dispersively bound, in which the solvent molecule lies above the seven-membered ring of TRN in a three-legged stool conformation but which differ in the conformational orientation of the CFH3 species on the TRN surface. Expansion of TRN with CF2H2 produces one 1:1 complex in which the solvent molecule lies above the plane of the TRN ring, but is considerably displaced from its centre of mass and in which binding is primarily electrostatic rather than dispersive. All three partially fluorinated methane molecules produce 1:1 complexes with TRN in which the solvent is bound in the TRN plane by intermolecular hygrogen-bonding. Such structures partially disrupt the intramolecular hydrogen bond of the chromophore and consequently exhibit LIFE spectra characterized by intense, strongly blue-shifted origin bands in which the proton tunneling doublets are unresolvable because of a large decrease in the intramolecular proton tunneling rate. The existence of good correlations between the solute-solvent binding energy and the microscopic solvent shift and between the binding energy and the proton affinities of the solvent for the entire group of hydrogen-bonding solvents, including the partially fluorinated methanes, suggests that C–F ... H–O and F–C–H ... O = C interactions result in weak hydrogen bonds which are not qualitatively different from those of more traditional hydrogen-bonding species. PACS No.: 33.20L, 35.20B

2020 ◽  
Vol 73 (8) ◽  
pp. 813
Author(s):  
Feng Wang ◽  
Shawkat Islam ◽  
Frederick Backler

Several model stereoisomers such as ferrocene (Fc), methoxyphenol, and furfural conformers are discussed. It was discovered that the Fc IR spectroscopic band(s) below 500cm−1 serve as fingerprints for eclipsed (splitting 17 (471–488)cm−1) and staggered Fc (splitting is ~2 (459–461)cm−1) in the gas phase. It is revealed that in the gas phase the dominance of the eclipsed Fc (D5h) at very low temperatures changes to a mixture of both eclipsed and staggered Fc when the temperature increases. However, in solvents such as CCl4, eclipsed Fc dominates at room temperature (300K) due to the additional solvation energy. Intramolecular interactions of organic model compounds such as methoxyphenols (guaiacol (GUA) and mequinol (MEQ)) and furfural, ionization energies such as the carbon 1s (core C1s), as well as valence binding energy spectra serve this purpose well. Hydrogen bonding alters the C1s binding energies of the methoxy carbon (C(7)) of anti-syn and anti-gauche conformers of GUA to 292.65 and 291.91eV, respectively. The trans and cis MEQ conformers, on the other hand, are nearly energy degenerate, whereas their dipole moments are significantly different: 2.66 Debye for cis and 0.63 Debye for trans-MEQ. Moreover, it is found that rotation around the Cring–OH and the Cring–OCH3 bonds differ in energy barrier height by ~0.50 kcal⋅mol−1. The Dyson orbital momentum profiles of the most different ionic states, 25a′ (0.35eV) and 3a′ (−0.33eV), between cis and trans-MEQ in outer valence space (which is measurable using electron momentum spectroscopy (EMS)), exhibit quantitative differences. Finally, the molecular switch from trans and cis-furfural engages with a small energy difference of 0.74 kcal mol−1, however, at the calculated C(3)(–H⋅⋅⋅O=C) site the C1s binding energy difference is 0.105eV (2.42 kcal mol−1) and the NMR chemical shift of the same carbon site is also significant; 7.58ppm from cis-furfural without hydrogen bonding.


1995 ◽  
Vol 15 (2-4) ◽  
pp. 229-247
Author(s):  
Hiroshi Sekiya ◽  
Taiji Nakajima ◽  
Hidenori Hamabe ◽  
Akira Mori ◽  
Hitoshi Takeshita ◽  
...  

The S1-S0 fluorescence excitation spectra of 5-chlorotropolone-M1 (M = Kr, Xe, CH4) van der Waals (vdW) complexes in the region near the electronic origin have been measured in a supersonic free jet to investigate the effect of the vdW interactions on proton tunneling. Tunneling splittings have been observed in the vdW vibrations as well as in the 000 transitions of the Kr and Xe complexes. The 000 tunneling splitting of the 5-chlorotropolone-(CH4)1 complex is significantly smaller than those of the Kr and Xe complexes. It has been suggested that the vdW vibrations couple with intramolecular motions, leading to a higher potential energy barrier to tunneling in the CH4 complex. The results of the 5- chlorotropolone complexes have been compared to those of the tropolone complexes.


1973 ◽  
Vol 27 (1) ◽  
pp. 1-5 ◽  
Author(s):  
James R. Lindsay ◽  
Harry J. Rose ◽  
William E. Swartz ◽  
Plato H. Watts ◽  
Kenneth A. Rayburn

The aluminum (2p) electron spectra of several anhydrous and “hydrous” aluminum oxides have been recorded, and the binding energies have been measured. A simple electrostatic model is employed to explain the observed shift in binding energy and relate it to differences in structure and hydrogen bonding. Two conclusions can be drawn: structural differences must be considered when interpreting photoelectron spectra for inorganic crystalline substances; and hydrogen bonding with anions may have a measurable effect on the binding energy of core electrons of the cations.


2006 ◽  
Vol 84 (8) ◽  
pp. 1045-1049 ◽  
Author(s):  
Shabaan AK Elroby ◽  
Kyu Hwan Lee ◽  
Seung Joo Cho ◽  
Alan Hinchliffe

Although anisyl units are basically poor ligands for metal ions, the rigid placements of their oxygens during synthesis rather than during complexation are undoubtedly responsible for the enhanced binding and selectivity of the spherand. We used standard B3LYP/6-31G** (5d) density functional theory (DFT) to investigate the complexation between spherands containing five anisyl groups, with CH2–O–CH2 (2) and CH2–S–CH2 (3) units in an 18-membered macrocyclic ring, and the cationic guests (Li+, Na+, and K+). Our geometric structure results for spherands 1, 2, and 3 are in good agreement with the previously reported X-ray diffraction data. The absolute values of the binding energy of all the spherands are inversely proportional to the ionic radius of the guests. The results, taken as a whole, show that replacement of one anisyl group by CH2–O–CH2 (2) and CH2–S–CH2 (3) makes the cavity bigger and less preorganized. In addition, both the binding and specificity decrease for small ions. The spherands 2 and 3 appear beautifully preorganized to bind all guests, so it is not surprising that their binding energies are close to the parent spherand 1. Interestingly, there is a clear linear relation between the radius of the cavity and the binding energy (R2 = 0.999).Key words: spherands, preorganization, density functional theory, binding energy, cavity size.


Symmetry ◽  
2021 ◽  
Vol 13 (8) ◽  
pp. 1405
Author(s):  
Feng Pan ◽  
Yingwen He ◽  
Lianrong Dai ◽  
Chong Qi ◽  
Jerry P. Draayer

A diagonalization scheme for the shell model mean-field plus isovector pairing Hamiltonian in the O(5) tensor product basis of the quasi-spin SUΛ(2) ⊗ SUI(2) chain is proposed. The advantage of the diagonalization scheme lies in the fact that not only can the isospin-conserved, charge-independent isovector pairing interaction be analyzed, but also the isospin symmetry breaking cases. More importantly, the number operator of the np-pairs can be realized in this neutron and proton quasi-spin basis, with which the np-pair occupation number and its fluctuation at the J = 0+ ground state of the model can be evaluated. As examples of the application, binding energies and low-lying J = 0+ excited states of the even–even and odd–odd N∼Z ds-shell nuclei are fit in the model with the charge-independent approximation, from which the neutron–proton pairing contribution to the binding energy in the ds-shell nuclei is estimated. It is observed that the decrease in the double binding-energy difference for the odd–odd nuclei is mainly due to the symmetry energy and Wigner energy contribution to the binding energy that alter the pairing staggering patten. The np-pair amplitudes in the np-pair stripping or picking-up process of these N = Z nuclei are also calculated.


2009 ◽  
Vol 08 (04) ◽  
pp. 691-711 ◽  
Author(s):  
FENG FENG ◽  
HUAN WANG ◽  
WEI-HAI FANG ◽  
JIAN-GUO YU

A modified semiempirical model named RM1BH, which is based on RM1 parameterizations, is proposed to simulate varied biological hydrogen-bonded systems. The RM1BH is formulated by adding Gaussian functions to the core–core repulsion items in original RM1 formula to reproduce the binding energies of hydrogen bonding of experimental and high-level computational results. In the parameterizations of our new model, 35 base-pair dimers, 18 amino acid residue dimers, 14 dimers between a base and an amino acid residue, and 20 other multimers were included. The results performed with RM1BH were compared with experimental values and the benchmark density-functional (B3LYP/6-31G**/BSSE) and Möller–Plesset perturbation (MP2/6-31G**/BSSE) calculations on various biological hydrogen-bonded systems. It was demonstrated that RM1BH model outperforms the PM3 and RM1 models in the calculations of the binding energies of biological hydrogen-bonded systems by very close agreement with the values of both high-level calculations and experiments. These results provide insight into the ideas, methods, and views of semiempirical modifications to investigate the weak interactions of biological systems.


2010 ◽  
Vol 88 (8) ◽  
pp. 759-768 ◽  
Author(s):  
Al Mokhtar Lamsabhi ◽  
Otilia Mó ◽  
Manuel Yáñez

The association of Ca2+ and Cu2+ to serine was investigated by means of B3LYP DFT calculations. The [serine–M]2+ (M = Ca, Cu) potential energy surfaces include, as does the neutral serine, a large number of conformers, in which a drastic reorganization of the electron density of the serine moiety is observed. This leads to significant changes in the number and strength of the intramolecular hydrogen bonds existing in the neutral serine tautomers. In some cases, a proton is transferred from the carboxylic OH group to the amino group and accordingly, some of the more stable [serine–M]2+ complexes can be viewed as the result of the interaction of the zwiterionic form of serine with the doubly charged metal ion. Whereas the interaction between Ca2+ and serine is essentially electrostatic, that between Cu2+ and serine has a non-negligible covalent character, reflected in larger electron densities at the bond critical points between the metal and the base, in the negative values of the electron density between the two interacting systems, and in much larger Cu2+ than Ca2+ binding energies. More importantly, the interaction with Cu2+ is followed by a partial oxidation of the base, which is not observed when the metal ion is Ca2+. The main consequence is that in Cu2+ complexes a significant acidity enhancement of the serine moiety takes place, which strongly favors the deprotonation of the [serine–Cu]2+ complexes. This is not the case for Ca2+ complexes. Thus, [serine–Ca]2+ complexes, like those formed by urea, thiourea, selenourea, or glycine, should be detected in the gas phase. Conversely, the complexes with Cu2+ should deprotonate spontaneously and therefore only [(serine–H)–Cu]+ monocations should be experimentally accessible.


2001 ◽  
Vol 695 ◽  
Author(s):  
G. Cui ◽  
M. Lane ◽  
K. Vijayamohanan ◽  
G. Ramanath

ABSTRACTAs the critical feature size in microelectronic devices continues to decrease below 100 nm, new barrier materials of > 5 nm thickness are required. Recently we have shown that self-assembled monolayers (SAMs) are attractive candidates that inhibit Cu diffusion into SiO2. For SAMs to be used as barriers in real applications, however, they must also promote adhesion at the Cu/dielectric interfaces. Here, we report preliminary quantitative measurements of interfacial adhesion energy and chemical binding energy of Cu/SiO2 interfaces treated with nitrogen-terminated SAMs. Amine-containing SAMs show a ~10% higher adhesion energy with Cu, while interfaces with Cu-pyridine bonds actually show degraded adhesion, when compared with that of the reference Cu/SiN interface. However, X-ray photoelectron spectroscopy (XPS) measurements show that Cu-pyridine and Cu-amine interactions have a factor-of-four higher binding energy than that of Cu-N bonds at Cu/SiN interfaces. The lack of correlation between adhesion and chemical binding energies is most likely due to incomplete coverage of SAMs.


The r. m. s. radius and the binding energy of oxygen 16 are calculated for several different internueleon potentials. These potentials all fit the low-energy data for two nucleons, they have hard cores of differing radii, and they include the Gammel-Thaler potential (core radius 0·4 fermi). The calculated r. m. s. radii range from 1·5 f for a potential with core radius 0·2 f to 2·0 f for a core radius 0·6 f. The value obtained from electron scattering experiments is 2·65 f. The calculated binding energies range from 256 MeV for a core radius 0·2 f to 118 MeV for core 0·5 f. The experimental value of binding energy is 127·3 MeV. The 25% discrepancy in the calculated r. m. s. radius may be due to the limitations of harmonic oscillator wave functions used in the unperturbed system.


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