Large perturbations of long-range nJ(1H,1H) and nJ(1H,19F) by the intramolecular hydrogen bonds in 2-mercaptobenzaldehyde, salicylaldehyde, and some derivatives. Reference structures for intramolecular hydrogen bonds

1993 ◽  
Vol 71 (7) ◽  
pp. 960-967 ◽  
Author(s):  
Ted Schaefer ◽  
Rudy Sebastian ◽  
David M. McKinnon ◽  
Perry W. Spevack ◽  
Kerry J. Cox ◽  
...  

Precise 1H nuclear magnetic resonance spectral parameters are reported for salicyladehyde and its 3-fluoro and 5-fluoro derivatives in nonpolar solutions. Such data are also given for the 2-mercapto, 2-methylthio, and 2-methoxy derivatives of benzaldehyde. Comparison of the long-range coupling constants in the various compounds and their conformers shows a large perturbation of their magnitudes by hydrogen bond formation. For the salicylaldehyde system, the perturbation is particularly large for couplings involving the aldehyde proton and protons or fluorine nuclei placed ortho to the hydroxyl group. For example, 5Jt (F, CHO) is reduced by about 50%. The perturbation, as expected, is much smaller for coupling constants of nuclei remote from the site of the hydrogen bond. In 2-mercaptobenzaldehyde the long-range coupling constants are also sensitive to hydrogen bond formation, those involving the sulfhydryl proton markedly so compared to the hydroxyl proton in salicylaldehyde. The strength of the [Formula: see text] bond is discussed. It is argued that the reference conformer for the mercapto compound in such a discussion is less easily defined than for salicylaldehyde because [Formula: see text] are similar to [Formula: see text] energies. The experimental data for the CCl4 solutions imply a free energy of formation of the [Formula: see text] bond of 4.8(5) kJ/mol at 300 K. Molecular orbital computations on the four planar conformers of each salicylaldehyde and 2-mercaptobenzaldehyde with the 6-31 G**(5D) basis are reported. For salicylaldehyde, the [Formula: see text] arrangement is taken as the reference conformer, with a computed energy of 25.7 kJ/mol relative to the hydrogen-bonded structure. For 2-mercaptobenzaldehyde, the [Formula: see text] and [Formula: see text] conformers are calculated to be isoenergetic, at 5.1 kJ/mol relative to the hydrogen-bonded conformer. Hence either arrangement serves as a reference structure in computations of the strength of the hydrogen bond. The computations are consistent with the experimental results for solutions of the molecules under discussion. An appendix gives the computed geometries of the eight planar conformers, as well as some atomic charges, allowing a rationalization of the relative energies of the conformers.

1960 ◽  
Vol 38 (8) ◽  
pp. 1249-1254 ◽  
Author(s):  
L. W. Reeves ◽  
E. A. Allan ◽  
K. O. Strømme

Nuclear shielding parameters have been obtained for 24 intramolecularly hydrogen-bonded phenols and naphthols. The shielding parameters are corrected for large diamagnetic anisotropies and a value ΔσOH obtained which represents the change in shielding parameter in parts per million with reference to the infinite dilution chemical shift of phenol, α-naphthol, or β-naphthol. These values of ΔσOH are approximately proportional to the change ΔvOH in the OH stretching frequency on formation of the hydrogen bond.


2020 ◽  
Author(s):  
Soham Sarkar ◽  
Atanu Maity ◽  
Rajarshi Chakrabarti

Reline, a mixture of urea and choline chloride in 2:1 molar ratio, is one of the most frequently used deep eutectic solvents. Pure reline and its aqueous solution have large scale industrial use. Owing to the presence of active hydrogen bond formation sites, urea and choline cation can disrupt the hydrogen-bonded network in water. However, a quantitative understanding of the microscopic structural features of water in the presence of reline is still lacking. We use extensive all-atom molecular dynamics simulations to elucidate the effect of the gradual addition of co-solvents on microscopic arrangements of water molecules. We consider four aqueous solutions of reline, between the wt% 26.3 to 91.4. A disruption of the local hydrogen-bonded water structure is observed on inclusion of urea and choline chloride. The extent of deviation of water structure from tetrahedrality is quantified using the orientational order parameter. Our analyses show a monotonic increase in structural disorder as the co-solvents are added. Increment in the values are observed when highly electro-negative hetero-atoms like Nitrogen, Oxygen of urea and choline cations are counted as the partners of the central water molecules. Further insights are drawn from the characterization of the hydrogen-bonded network of the water and we observe gradual rupturing of water-water hydrogen bonds and its subsequent replacement by the water-urea hydrogen bonds. A negligible contribution from the hydrogen bonds between water and bulky choline cation has also been found. Considering all the constituents as the hydrogen bond partner we calculate the possibility of successful hydrogen bond formation with a central water molecule. This gives a clear picture of the underlying mechanism of water replacement by urea.


2020 ◽  
Author(s):  
Soham Sarkar ◽  
Atanu Maity ◽  
Rajarshi Chakrabarti

Reline, a mixture of urea and choline chloride in 2:1 molar ratio, is one of the most frequently used deep eutectic solvents. Pure reline and its aqueous solution have large scale industrial use. Owing to the presence of active hydrogen bond formation sites, urea and choline cation can disrupt the hydrogen-bonded network in water. However, a quantitative understanding of the microscopic structural features of water in the presence of reline is still lacking. We use extensive all-atom molecular dynamics simulations to elucidate the effect of the gradual addition of co-solvents on microscopic arrangements of water molecules. We consider four aqueous solutions of reline, between the wt% 26.3 to 91.4. A disruption of the local hydrogen-bonded water structure is observed on inclusion of urea and choline chloride. The extent of deviation of water structure from tetrahedrality is quantified using the orientational order parameter. Our analyses show a monotonic increase in structural disorder as the co-solvents are added. Increment in the values are observed when highly electro-negative hetero-atoms like Nitrogen, Oxygen of urea and choline cations are counted as the partners of the central water molecules. Further insights are drawn from the characterization of the hydrogen-bonded network of the water and we observe gradual rupturing of water-water hydrogen bonds and its subsequent replacement by the water-urea hydrogen bonds. A negligible contribution from the hydrogen bonds between water and bulky choline cation has also been found. Considering all the constituents as the hydrogen bond partner we calculate the possibility of successful hydrogen bond formation with a central water molecule. This gives a clear picture of the underlying mechanism of water replacement by urea.


2022 ◽  
Author(s):  
Asia Marie S Riel ◽  
Daniel Adam Decato ◽  
Jiyu Sun ◽  
Orion Berryman

Recent results indicate a halogen bond donor is strengthened through direct interaction with a hydrogen bond to the electron-rich belt of the halogen. Here, this Hydrogen Bond enhanced Halogen Bond...


Molecules ◽  
2019 ◽  
Vol 24 (3) ◽  
pp. 643 ◽  
Author(s):  
Chi-Tung Yeung ◽  
Wesley Chan ◽  
Wai-Sum Lo ◽  
Ga-Lai Law ◽  
Wing-Tak Wong

The synthesis of a new CF3-containing stereogenic atropisomeric pair of ortho-disubstituted biphenyl scaffold is presented. The atropisomers are surprisingly conformationally stable for isolation. X-ray structures show that their stability comes from an intramolecular hydrogen bond formation from their two hydroxyl groups and renders the spatial arrangement of their peripheral CF3 and CH3 groups very different. The synthesized stereogenic scaffold proved to be effective in catalyzing the asymmetric N-nitroso aldol reaction of enamine and nitrosobenzene. Compared to similar scaffolds without CF3 groups, one of our atropisomer exhibits an increase in enantioselectivity in this reaction.


2000 ◽  
Vol 56 (5) ◽  
pp. 849-856 ◽  
Author(s):  
Clair Bilton ◽  
Frank H. Allen ◽  
Gregory P. Shields ◽  
Judith A. K. Howard

A systematic survey of the Cambridge Structural Database (CSD) has identified all intramolecular hydrogen-bonded ring motifs comprising less than 20 atoms with N and O donors and acceptors. The probabilities of formation Pm of the 50 most common motifs, which chiefly comprise five- and six-membered rings, have been derived by considering the number of intramolecular motifs which could possibly form. The most probable motifs (Pm > 85%) are planar conjugated six-membered rings with a propensity for resonance-assisted hydrogen bonding and these form the shortest contacts, whilst saturated six-membered rings typically have Pm < 10%. The influence of intramolecular-motif formation on intermolecular hydrogen-bond formation has been assessed for a planar conjugated model substructure, showing that a donor-H is considerably less likely to form an intermolecular bond if it forms an intramolecular one. On the other hand, the involvement of a carbonyl acceptor in an intramolecular bond does not significantly affect its ability to act as an intermolecular acceptor and thus carbonyl acceptors display a substantially higher inclination for bifurcation if one hydrogen bond is intramolecular.


1978 ◽  
Vol 33 (11-12) ◽  
pp. 870-875 ◽  
Author(s):  
Hans-Helmut Paul ◽  
Helmut Sapper ◽  
Wolfgang Lohmann

The formation of hydrogen bonds between the minor tranquilizers diazepam and nitrazepam and a few nucleobases was studied in deuterochloroform solution by means of proton magnetic resonance spectroscopy. The thermodynamic and spectroscopic data of the associations were evaluated on the basis of a dimer model, using the concentration dependent shifts of the protons involved in hydrogen bonds. The interactions of nitrazepam (ΔH0= -10 to -21 k J/mol; ΔG250 - 0.2 to -7.4 kJ/mol) were found to be stronger than those of diazepam (ΔH0 = - 10 to - 13 kJ/mol; ΔG250 = 6.0 to 6.4 k j/mol). The various binding sites of the benzodiazepines for hydrogen bonds are discussed.


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