Self-Guided Stereo Correspondence Estimation Algorithm

2020 ◽  
pp. 2150028
Author(s):  
Md. Abdul Mannan Mondal ◽  
Mohammad Haider Ali
Keyword(s):  
State Of The Art ◽  
Computational Cost ◽  
Ground Truth ◽  
Estimation Algorithm ◽  
Reference Image ◽  
Stereo Correspondence ◽  
Photometric Property ◽  
Left Image ◽  
Key Techniques ◽  
Searching Performance

This paper introduces an innovative algorithm, “Self-guided Stereo Correspondence” (SGSC), that is directed by photometric properties of the candidate pixels. As the photometric properties of reference image (left image) pixel and its neighbor’s pixel are similar in most cases, so the upcoming corresponding pixel exists in the surrounding of the previous matching pixel. Searching performance is greatly improved by utilizing this photometric property of the candidate pixels. The searching performance is further improved by applying the pioneering threshold technique. These two key techniques sufficiently reduced the computational cost with no degradation of accuracy. The achievements of the proposed method are testified on Middlebury standard Stereo Datasets of 2003 and 2006 and the Middlebury latest Optical Flow Dataset. Finally, the proposed method is compared with present state-of-the-art methods and our SGSC outdoes the latest methods in terms of speed, visualization of hidden ground truth, 3D reconstruction and accuracy.

Nanosecond Photodynamics Simulations of a Cis-Trans Isomerization Are Enabled by Machine Learning

2020 ◽  
Author(s):  
Jingbai Li ◽  
Patrick Reiser ◽  
André Eberhard ◽  
Pascal Friederich ◽  
Steven Lopez
Keyword(s):  
Machine Learning ◽  
Neural Networks ◽  
Excited State ◽  
Adaptive Sampling ◽  
Computational Cost ◽  
Ground Truth ◽  
Absolute Error ◽  
Photochemical Reactions ◽  
Computational Techniques ◽  
Full Potential

<p>Photochemical reactions are being increasingly used to construct complex molecular architectures with mild and straightforward reaction conditions. Computational techniques are increasingly important to understand the reactivities and chemoselectivities of photochemical isomerization reactions because they offer molecular bonding information along the excited-state(s) of photodynamics. These photodynamics simulations are resource-intensive and are typically limited to 1–10 picoseconds and 1,000 trajectories due to high computational cost. Most organic photochemical reactions have excited-state lifetimes exceeding 1 picosecond, which places them outside possible computational studies. Westermeyr <i>et al.</i> demonstrated that a machine learning approach could significantly lengthen photodynamics simulation times for a model system, methylenimmonium cation (CH<sub>2</sub>NH<sub>2</sub><sup>+</sup>).</p><p>We have developed a Python-based code, Python Rapid Artificial Intelligence <i>Ab Initio</i> Molecular Dynamics (PyRAI<sup>2</sup>MD), to accomplish the unprecedented 10 ns <i>cis-trans</i> photodynamics of <i>trans</i>-hexafluoro-2-butene (CF<sub>3</sub>–CH=CH–CF<sub>3</sub>) in 3.5 days. The same simulation would take approximately 58 years with ground-truth multiconfigurational dynamics. We proposed an innovative scheme combining Wigner sampling, geometrical interpolations, and short-time quantum chemical trajectories to effectively sample the initial data, facilitating the adaptive sampling to generate an informative and data-efficient training set with 6,232 data points. Our neural networks achieved chemical accuracy (mean absolute error of 0.032 eV). Our 4,814 trajectories reproduced the S<sub>1</sub> half-life (60.5 fs), the photochemical product ratio (<i>trans</i>: <i>cis</i> = 2.3: 1), and autonomously discovered a pathway towards a carbene. The neural networks have also shown the capability of generalizing the full potential energy surface with chemically incomplete data (<i>trans</i> → <i>cis</i> but not <i>cis</i> → <i>trans</i> pathways) that may offer future automated photochemical reaction discoveries.</p>

scholarly journals G-Tric: generating three-way synthetic datasets with triclustering solutions

2021 ◽  
Vol 22 (1) ◽  
Author(s):  
João Lobo ◽  
Rui Henriques ◽  
Sara C. Madeira
Keyword(s):  
State Of The Art ◽  
Synthetic Data ◽  
Ground Truth ◽  
Real Data ◽  
Three Dimensions ◽  
Additional Advantage ◽  
Urban Dynamics ◽  
Data Generator ◽  
Real World Datasets ◽  
Synthetic Datasets

Abstract Background Three-way data started to gain popularity due to their increasing capacity to describe inherently multivariate and temporal events, such as biological responses, social interactions along time, urban dynamics, or complex geophysical phenomena. Triclustering, subspace clustering of three-way data, enables the discovery of patterns corresponding to data subspaces (triclusters) with values correlated across the three dimensions (observations $$\times$$ × features $$\times$$ × contexts). With increasing number of algorithms being proposed, effectively comparing them with state-of-the-art algorithms is paramount. These comparisons are usually performed using real data, without a known ground-truth, thus limiting the assessments. In this context, we propose a synthetic data generator, G-Tric, allowing the creation of synthetic datasets with configurable properties and the possibility to plant triclusters. The generator is prepared to create datasets resembling real 3-way data from biomedical and social data domains, with the additional advantage of further providing the ground truth (triclustering solution) as output. Results G-Tric can replicate real-world datasets and create new ones that match researchers needs across several properties, including data type (numeric or symbolic), dimensions, and background distribution. Users can tune the patterns and structure that characterize the planted triclusters (subspaces) and how they interact (overlapping). Data quality can also be controlled, by defining the amount of missing, noise or errors. Furthermore, a benchmark of datasets resembling real data is made available, together with the corresponding triclustering solutions (planted triclusters) and generating parameters. Conclusions Triclustering evaluation using G-Tric provides the possibility to combine both intrinsic and extrinsic metrics to compare solutions that produce more reliable analyses. A set of predefined datasets, mimicking widely used three-way data and exploring crucial properties was generated and made available, highlighting G-Tric’s potential to advance triclustering state-of-the-art by easing the process of evaluating the quality of new triclustering approaches.

scholarly journals COVID-19 infection map generation and detection from chest X-ray images

2021 ◽  
Vol 9 (1) ◽  
Author(s):  
Aysen Degerli ◽  
Mete Ahishali ◽  
Mehmet Yamac ◽  
Serkan Kiranyaz ◽  
Muhammad E. H. Chowdhury ◽  
...  
Keyword(s):  
State Of The Art ◽  
Ground Truth ◽  
Clinical Use ◽  
X Ray ◽  
Learning Techniques ◽  
Map Generation ◽  
Severity Grading ◽  
Chest X Ray ◽  
Novel Method ◽  
Aided Diagnosis

AbstractComputer-aided diagnosis has become a necessity for accurate and immediate coronavirus disease 2019 (COVID-19) detection to aid treatment and prevent the spread of the virus. Numerous studies have proposed to use Deep Learning techniques for COVID-19 diagnosis. However, they have used very limited chest X-ray (CXR) image repositories for evaluation with a small number, a few hundreds, of COVID-19 samples. Moreover, these methods can neither localize nor grade the severity of COVID-19 infection. For this purpose, recent studies proposed to explore the activation maps of deep networks. However, they remain inaccurate for localizing the actual infestation making them unreliable for clinical use. This study proposes a novel method for the joint localization, severity grading, and detection of COVID-19 from CXR images by generating the so-called infection maps. To accomplish this, we have compiled the largest dataset with 119,316 CXR images including 2951 COVID-19 samples, where the annotation of the ground-truth segmentation masks is performed on CXRs by a novel collaborative human–machine approach. Furthermore, we publicly release the first CXR dataset with the ground-truth segmentation masks of the COVID-19 infected regions. A detailed set of experiments show that state-of-the-art segmentation networks can learn to localize COVID-19 infection with an F1-score of 83.20%, which is significantly superior to the activation maps created by the previous methods. Finally, the proposed approach achieved a COVID-19 detection performance with 94.96% sensitivity and 99.88% specificity.

Accurate 3D Localization Using RGB-TOF Camera and IMU for Industrial Mobile Robots

Robotica ◽  
2021 ◽  
pp. 1-18
Author(s):  
Majid Yekkehfallah ◽  
Ming Yang ◽  
Zhiao Cai ◽  
Liang Li ◽  
Chuanxiang Wang
Keyword(s):  
Mobile Robots ◽  
Inertial Measurement Unit ◽  
Indoor Environment ◽  
State Of The Art ◽  
Low Cost ◽  
Estimation Algorithm ◽  
Measurement Unit ◽  
3D Localization ◽  
Fast Motion ◽  
Tof Camera

SUMMARY Localization based on visual natural landmarks is one of the state-of-the-art localization methods for automated vehicles that is, however, limited in fast motion and low-texture environments, which can lead to failure. This paper proposes an approach to solve these limitations with an extended Kalman filter (EKF) based on a state estimation algorithm that fuses information from a low-cost MEMS Inertial Measurement Unit and a Time-of-Flight camera. We demonstrate our results in an indoor environment. We show that the proposed approach does not require any global reflective landmark for localization and is fast, accurate, and easy to use with mobile robots.

scholarly journals Critical Aspects of Person Counting and Density Estimation

2021 ◽  
Vol 7 (2) ◽  
pp. 21
Author(s):  
Roland Perko ◽  
Manfred Klopschitz ◽  
Alexander Almer ◽  
Peter M. Roth
Keyword(s):  
Density Estimation ◽  
Network Architecture ◽  
Reference Data ◽  
State Of The Art ◽  
Limit State ◽  
Ground Truth ◽  
Data Sets ◽  
Ground Truth Generation ◽  
Baseline Approach ◽  
Critical Aspects

Many scientific studies deal with person counting and density estimation from single images. Recently, convolutional neural networks (CNNs) have been applied for these tasks. Even though often better results are reported, it is often not clear where the improvements are resulting from, and if the proposed approaches would generalize. Thus, the main goal of this paper was to identify the critical aspects of these tasks and to show how these limit state-of-the-art approaches. Based on these findings, we show how to mitigate these limitations. To this end, we implemented a CNN-based baseline approach, which we extended to deal with identified problems. These include the discovery of bias in the reference data sets, ambiguity in ground truth generation, and mismatching of evaluation metrics w.r.t. the training loss function. The experimental results show that our modifications allow for significantly outperforming the baseline in terms of the accuracy of person counts and density estimation. In this way, we get a deeper understanding of CNN-based person density estimation beyond the network architecture. Furthermore, our insights would allow to advance the field of person density estimation in general by highlighting current limitations in the evaluation protocols.

Low-Computational Cost Estimation Algorithm for Adaptive Optics Systems*

2011 ◽  
Vol 44 (1) ◽  
pp. 5573-5578
Author(s):  
M. Abbas Turki ◽  
D. Esqueda Merino ◽  
K. Kasper ◽  
C. Durieu
Keyword(s):  
Adaptive Optics ◽  
Cost Estimation ◽  
Computational Cost ◽  
Estimation Algorithm ◽  
Low Computational Cost

scholarly journals Plant Leaf Disease Recognition Using Depth-Wise Separable Convolution-Based Models

Symmetry ◽  
2021 ◽  
Vol 13 (3) ◽  
pp. 511
Author(s):  
Syed Mohammad Minhaz Hossain ◽  
Kaushik Deb ◽  
Pranab Kumar Dhar ◽  
Takeshi Koshiba
Keyword(s):  
State Of The Art ◽  
Computational Cost ◽  
Region Of Interest ◽  
Number Of Clusters ◽  
Plant Leaf ◽  
Leaf Disease ◽  
Automatic Initialization ◽  
Adequate Accuracy ◽  
Model Size ◽  
High Computational Cost

Proper plant leaf disease (PLD) detection is challenging in complex backgrounds and under different capture conditions. For this reason, initially, modified adaptive centroid-based segmentation (ACS) is used to trace the proper region of interest (ROI). Automatic initialization of the number of clusters (K) using modified ACS before recognition increases tracing ROI’s scalability even for symmetrical features in various plants. Besides, convolutional neural network (CNN)-based PLD recognition models achieve adequate accuracy to some extent. However, memory requirements (large-scaled parameters) and the high computational cost of CNN-based PLD models are burning issues for the memory restricted mobile and IoT-based devices. Therefore, after tracing ROIs, three proposed depth-wise separable convolutional PLD (DSCPLD) models, such as segmented modified DSCPLD (S-modified MobileNet), segmented reduced DSCPLD (S-reduced MobileNet), and segmented extended DSCPLD (S-extended MobileNet), are utilized to represent the constructive trade-off among accuracy, model size, and computational latency. Moreover, we have compared our proposed DSCPLD recognition models with state-of-the-art models, such as MobileNet, VGG16, VGG19, and AlexNet. Among segmented-based DSCPLD models, S-modified MobileNet achieves the best accuracy of 99.55% and F1-sore of 97.07%. Besides, we have simulated our DSCPLD models using both full plant leaf images and segmented plant leaf images and conclude that, after using modified ACS, all models increase their accuracy and F1-score. Furthermore, a new plant leaf dataset containing 6580 images of eight plants was used to experiment with several depth-wise separable convolution models.

Can Computers Outperform Humans in Detecting User Zone-Outs? Implications for Intelligent Interfaces

2022 ◽  
Vol 29 (2) ◽  
pp. 1-33
Author(s):  
Nigel Bosch ◽  
Sidney K. D'Mello
Keyword(s):  
Operating Characteristic ◽  
State Of The Art ◽  
Characteristic Curve ◽  
Ground Truth ◽  
Mind Wandering ◽  
High Stakes ◽  
Machine Learning Model ◽  
Improve Accuracy ◽  
Comparable Accuracy ◽  
Operating Characteristic Curve

The ability to identify whether a user is “zoning out” (mind wandering) from video has many HCI (e.g., distance learning, high-stakes vigilance tasks). However, it remains unknown how well humans can perform this task, how they compare to automatic computerized approaches, and how a fusion of the two might improve accuracy. We analyzed videos of users’ faces and upper bodies recorded 10s prior to self-reported mind wandering (i.e., ground truth) while they engaged in a computerized reading task. We found that a state-of-the-art machine learning model had comparable accuracy to aggregated judgments of nine untrained human observers (area under receiver operating characteristic curve [AUC] = .598 versus .589). A fusion of the two (AUC = .644) outperformed each, presumably because each focused on complementary cues. Furthermore, adding more humans beyond 3–4 observers yielded diminishing returns. We discuss implications of human–computer fusion as a means to improve accuracy in complex tasks.

scholarly journals Estimating Efforts and Success of Symmetry-Seeing Machines by Use of Synthetic Data

Symmetry ◽  
2019 ◽  
Vol 11 (2) ◽  
pp. 227
Author(s):  
Eckart Michaelsen ◽  
Stéphane Vujasinovic
Keyword(s):  
Extraction Method ◽  
Input Data ◽  
State Of The Art ◽  
Recognition Performance ◽  
Human Subjects ◽  
Synthetic Data ◽  
Ground Truth ◽  
Comparative Test ◽  
Real Imagery ◽  
Dominant Part

Representative input data are a necessary requirement for the assessment of machine-vision systems. For symmetry-seeing machines in particular, such imagery should provide symmetries as well as asymmetric clutter. Moreover, there must be reliable ground truth with the data. It should be possible to estimate the recognition performance and the computational efforts by providing different grades of difficulty and complexity. Recent competitions used real imagery labeled by human subjects with appropriate ground truth. The paper at hand proposes to use synthetic data instead. Such data contain symmetry, clutter, and nothing else. This is preferable because interference with other perceptive capabilities, such as object recognition, or prior knowledge, can be avoided. The data are given sparsely, i.e., as sets of primitive objects. However, images can be generated from them, so that the same data can also be fed into machines requiring dense input, such as multilayered perceptrons. Sparse representations are preferred, because the author’s own system requires such data, and in this way, any influence of the primitive extraction method is excluded. The presented format allows hierarchies of symmetries. This is important because hierarchy constitutes a natural and dominant part in symmetry-seeing. The paper reports some experiments using the author’s Gestalt algebra system as symmetry-seeing machine. Additionally included is a comparative test run with the state-of-the-art symmetry-seeing deep learning convolutional perceptron of the PSU. The computational efforts and recognition performance are assessed.

scholarly journals DeepMAsED: evaluating the quality of metagenomic assemblies

2020 ◽  
Vol 36 (10) ◽  
pp. 3011-3017 ◽  
Author(s):  
Olga Mineeva ◽  
Mateo Rojas-Carulla ◽  
Ruth E Ley ◽  
Bernhard Schölkopf ◽  
Nicholas D Youngblut
Keyword(s):  
Large Scale ◽  
State Of The Art ◽  
Ground Truth ◽  
Supplementary Information ◽  
Learning Approach ◽  
Wide Range ◽  
Metagenome Assembly ◽  
Model Training ◽  
Reference Genomes

Abstract Motivation Methodological advances in metagenome assembly are rapidly increasing in the number of published metagenome assemblies. However, identifying misassemblies is challenging due to a lack of closely related reference genomes that can act as pseudo ground truth. Existing reference-free methods are no longer maintained, can make strong assumptions that may not hold across a diversity of research projects, and have not been validated on large-scale metagenome assemblies. Results We present DeepMAsED, a deep learning approach for identifying misassembled contigs without the need for reference genomes. Moreover, we provide an in silico pipeline for generating large-scale, realistic metagenome assemblies for comprehensive model training and testing. DeepMAsED accuracy substantially exceeds the state-of-the-art when applied to large and complex metagenome assemblies. Our model estimates a 1% contig misassembly rate in two recent large-scale metagenome assembly publications. Conclusions DeepMAsED accurately identifies misassemblies in metagenome-assembled contigs from a broad diversity of bacteria and archaea without the need for reference genomes or strong modeling assumptions. Running DeepMAsED is straight-forward, as well as is model re-training with our dataset generation pipeline. Therefore, DeepMAsED is a flexible misassembly classifier that can be applied to a wide range of metagenome assembly projects. Availability and implementation DeepMAsED is available from GitHub at https://github.com/leylabmpi/DeepMAsED. Supplementary information Supplementary data are available at Bioinformatics online.

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