Ecological Interactions and Macroevolution: A New Field with Old Roots

2020 ◽  
Vol 51 (1) ◽  
pp. 215-243 ◽  
Author(s):  
David H. Hembry ◽  
Marjorie G. Weber
Keyword(s):  
Species Interactions ◽  
Interspecific Interactions ◽  
Biotic Interactions ◽  
Evolutionary Change ◽  
Future Research ◽  
Ecological Interactions ◽  
Open Questions ◽  
Work Done ◽  
Lineage Diversification

Linking interspecific interactions (e.g., mutualism, competition, predation, parasitism) to macroevolution (evolutionary change on deep timescales) is a key goal in biology. The role of species interactions in shaping macroevolutionary trajectories has been studied for centuries and remains a cutting-edge topic of current research. However, despite its deep historical roots, classic and current approaches to this topic are highly diverse. Here, we combine historical and contemporary perspectives on the study of ecological interactions in macroevolution, synthesizing ideas across eras to build a zoomed-out picture of the big questions at the nexus of ecology and macroevolution. We discuss the trajectory of this important and challenging field, dividing research into work done before the 1970s, research between 1970 and 2005, and work done since 2005. We argue that in response to long-standing questions in paleobiology, evidence accumulated to date has demonstrated that biotic interactions (including mutualism) can influence lineage diversification and trait evolution over macroevolutionary timescales, and we outline major open questions for future research in the field.

scholarly journals Coexistence of surface and cave amphipods in an ecotone environment

2011 ◽  
Vol 80 (2) ◽  
pp. 133-141 ◽  
Author(s):  
Roman Luštrik ◽  
Martin Turjak ◽  
Simona Kralj-Fišer ◽  
Cene Fišer
Keyword(s):  
Leaf Litter ◽  
Species Interactions ◽  
Interspecific Interactions ◽  
Habitat Choice ◽  
Intraspecific Interactions ◽  
Size Dependent ◽  
Predation Effects ◽  
Similar Body ◽  
Subterranean Species

Interspecific interactions between surface and subterranean species may be a key determinant for species distributions. Until now, the existence of competition (including predation) between these groups has not been tested. To assess the coexistence and potential role of interspecific interactions between surface Gammarus fossarum and subterranean Niphargus timavi, and to determine their micro distributions, we conducted a series of field and laboratory observations. We aimed to determine: (1) species substrate preference, (2) whether the presence of G. fossarum influences the habitat choice of N. timavi, and (3) possible predation effects on micro habitat choice of small juveniles. Throughout a small river in SW Slovenia, N. timavi was predominantly found in leaf litter and gravel, but rarely in sand. In the sand however, we exclusively found juveniles. In contrast, surface G. fossarum sheltered mainly in leaf litter. A similar, body size dependent, micro distribution was observed in G. fossarum, where small individuals were generally found in gravel and sand. The presence of G. fossarum affected the micro distribution of juvenile, but not adult, N. timavi. In the laboratory we observed predation and cannibalism in both species. Niphargus timavi, however, appeared to be a more efficient predator than G. fossarum. In particular, juvenile N. timavi were most vulnerable to preying by adults of both species. This probably affected the distribution of juvenile N. timavi that chose finer substrates when placed with adult individuals in an aquarium with granules of different size. To understand the distribution of subterranean species, the summed effect of intraspecific interactions, as well as surface – subterranean species interactions, in particular between individuals of different size, should be taken into account.

scholarly journals A Holling Functional Response Model for Mapping QTLs Governing Interspecific Interactions

2021 ◽  
Vol 12 ◽  
Author(s):  
Xiao-Yu Zhang ◽  
Huiying Gong ◽  
Qing Fang ◽  
Xuli Zhu ◽  
Libo Jiang ◽  
...  
Keyword(s):  
Functional Response ◽  
Species Interactions ◽  
Community Dynamics ◽  
Interspecific Interactions ◽  
Microbial Interactions ◽  
Ecological Communities ◽  
Response Model ◽  
Ecological Interactions ◽  
Dynamic Complexity ◽  
Genome Level

Genes play an important role in community ecology and evolution, but how to identify the genes that affect community dynamics at the whole genome level is very challenging. Here, we develop a Holling type II functional response model for mapping quantitative trait loci (QTLs) that govern interspecific interactions. The model, integrated with generalized Lotka-Volterra differential dynamic equations, shows a better capacity to reveal the dynamic complexity of inter-species interactions than classic competition models. By applying the new model to a published mapping data from a competition experiment of two microbial species, we identify a set of previously uncharacterized QTLs that are specifically responsible for microbial cooperation and competition. The model can not only characterize how these QTLs affect microbial interactions, but also address how change in ecological interactions activates the genetic effects of the QTLs. This model provides a quantitative means of predicting the genetic architecture that shapes the dynamic behavior of ecological communities.

scholarly journals Anaphora With Non-nominal Antecedents in Computational Linguistics: a Survey

2018 ◽  
Vol 44 (3) ◽  
pp. 547-612 ◽  
Author(s):  
Varada Kolhatkar ◽  
Adam Roussel ◽  
Stefanie Dipper ◽  
Heike Zinsmeister
Keyword(s):  
Computational Linguistics ◽  
Question Answering ◽  
Future Research ◽  
Good Picture ◽  
Text Understanding ◽  
Theoretical Approaches ◽  
Current State ◽  
Open Questions ◽  
Work Done ◽  
Computational Systems

This article provides an extensive overview of the literature related to the phenomenon of non-nominal-antecedent anaphora (also known as abstract anaphora or discourse deixis), a type of anaphora in which an anaphor like “that” refers to an antecedent (marked in boldface) that is syntactically non-nominal, such as the first sentence in “It’s way too hot here. That’s why I’m moving to Alaska.” Annotating and automatically resolving these cases of anaphora is interesting in its own right because of the complexities involved in identifying non-nominal antecedents, which typically represent abstract objects such as events, facts, and propositions. There is also practical value in the resolution of non-nominal-antecedent anaphora, as this would help computational systems in machine translation, summarization, and question answering, as well as, conceivably, any other task dependent on some measure of text understanding. Most of the existing approaches to anaphora annotation and resolution focus on nominal-antecedent anaphora, classifying many of the cases where the antecedents are syntactically non-nominal as non-anaphoric. There has been some work done on this topic, but it remains scattered and difficult to collect and assess. With this article, we hope to bring together and synthesize work done in disparate contexts up to now in order to identify fundamental problems and draw conclusions from an overarching perspective. Having a good picture of the current state of the art in this field can help researchers direct their efforts to where they are most necessary. Because of the great variety of theoretical approaches that have been brought to bear on the problem, there is an equally diverse array of terminologies that are used to describe it, so we will provide an overview and discussion of these terminologies. We also describe the linguistic properties of non-nominal-antecedent anaphora, examine previous annotation efforts that have addressed this topic, and present the computational approaches that aim at resolving non-nominal-antecedent anaphora automatically. We close with a review of the remaining open questions in this area and some of our recommendations for future research.

scholarly journals The Role of Monk Parakeets as Nest-Site Facilitators in Their Native and Invaded Areas

Biology ◽  
2021 ◽  
Vol 10 (7) ◽  
pp. 683
Author(s):  
Dailos Hernández-Brito ◽  
Martina Carrete ◽  
Guillermo Blanco ◽  
Pedro Romero-Vidal ◽  
Juan Carlos Senar ◽  
...  
Keyword(s):  
Urban Areas ◽  
Native Species ◽  
Nest Site ◽  
Interspecific Interactions ◽  
Biotic Interactions ◽  
Monk Parakeet ◽  
Rural And Urban Areas ◽  
Positive Effects ◽  
Myiopsitta Monachus

While most of the knowledge on invasive species focuses on their impacts, little is known about their potential positive effects on other species. Invasive ecosystem engineers can disrupt recipient environments; however, they may also facilitate access to novel resources for native species. The monk parakeet (Myiopsitta monachus) is a worldwide invader and the only parrot that builds its own communal nests, which can be used by other species. However, the ecological effects of these interspecific interactions are barely known. We compared the role of the monk parakeet as a nest-site facilitator in different rural and urban areas, both invaded and native, across three continents and eight breeding seasons. A total of 2690 nests from 42 tenant species, mostly cavity-nesting birds, were recorded in 26% of 2595 monk parakeet nests. Rural and invaded areas showed the highest abundance and richness of tenant species. Multispecies communal nests triggered interspecific aggression between the monk parakeet host and its tenants, but also a cooperative defense against predators. Despite the positive effects for native species, monk parakeets also facilitate nesting opportunities to other non-native species and may also transmit diseases to tenants, highlighting the complexity of biotic interactions in biological invasions.

scholarly journals Shifts between cooperation and antagonism driven by individual variation: A systematic synthesis review

2020 ◽  
Author(s):  
Nicholas Patrick Moran ◽  
Barbara Caspers ◽  
Nayden Chakarov ◽  
Uli Ernst ◽  
Claudia Fricke ◽  
...  
Keyword(s):  
Phenotypic Variation ◽  
Future Research ◽  
Synthesis Methods ◽  
Ecological Interactions ◽  
Trait Variation ◽  
Ecological Processes ◽  
Intraspecific Trait Variation ◽  
Plant Animal Interactions ◽  
Aggressive Personality

The outcomes of ecological interactions fall along a continuum from cooperative (mutually beneficial) to antagonistic (detrimental to one or both parties). This applies at both interspecific (e.g. plant-animal interactions) and intraspecific levels (e.g. male-female interactions). Phenotypic variation among individuals is increasingly being recognised as an important factor in ecological processes, and trait variation in either interacting party may determine the outcome of the interaction, such as whether a symbiont provides net costs or benefits to their host, or whether two conspecifics decide to cooperatively forage or to compete over food. This systematic review investigates the role of intraspecific trait variation (‘ITV’) in determining the cooperative-antagonistic outcome of ecological interactions. Based on a literature collection of 95 empirical and theoretical publications meeting our inclusion criteria, we give an overview of the various mechanisms that can lead to shifts between antagonism and cooperation within or between species. We describe two broad classes of interrelated mechanisms that may drive shifts in outcomes. First, trait frequency effects occur when processes influencing a population’s composition of traits linked to cooperation or antagonism (e.g. aggressive personality types, cheater/exploiter phenotypes etc.) lead to net shifts in interaction outcome. Second, systemic variance effects occur when changes in the amount of ITV in the population (as opposed to the mean phenotype) is the factor driving shifts. Both heritable genetic differences among individuals and phenotypic plasticity are important sources of phenotypic variation. The specific mix of heritable vs. plastic ITV may determine whether a change from cooperative to antagonistic, or vice versa, is likely to be short-term (i.e. context-dependent) or lead to more persistent shifts (e.g. mutualism breakdown). To guide future research on this topic we describe knowledge gaps and divergences between empirical and theoretical literature, further highlighting the value of applying research synthesis methods in ecology and evolution.

scholarly journals Adaptation and latitudinal gradients in species interactions: nest predation in birds

2019 ◽  
Author(s):  
Benjamin G. Freeman ◽  
Micah N. Scholer ◽  
Mannfred M. A. Boehm ◽  
Julian Heavyside ◽  
Dolph Schluter
Keyword(s):  
Nest Predation ◽  
Species Interactions ◽  
Interspecific Interactions ◽  
Interaction Strength ◽  
Biotic Interactions ◽  
Western Hemisphere ◽  
Evolutionary Rates ◽  
Latitudinal Gradients ◽  
Biotic Interaction ◽  
The Tropics

AbstractThe “biotic interactions” hypothesis—that stronger interspecific interactions in the tropics drive faster evolution and speciation, giving rise to the latitudinal diversity gradient—has inspired many tests of whether certain biotic interactions are indeed stronger in the tropics. However, the possibility that populations have adapted to latitudinal differences in species interactions, blunting effects on evolutionary rates, has been largely ignored. Here we show that mean rates of nest predation experienced by land birds vary minimally with latitude in the Western Hemisphere. This result is surprising because nest predation in birds is a canonical example of a strong tropical biotic interaction. We explain our finding by demonstrating that (1) rates of nest predation are in fact higher in the tropics, but only when controlling for the length of the nesting period, (2) long nesting periods are associated with reduced predation rates, and (3) tropical birds have evolved particularly long nesting periods. We suggest this is a case example of how adaptation to a biotic interaction can alter observed latitudinal gradients in interaction strength, potentially equalizing evolutionary rates among latitudes. More broadly, we advocate for tests of the biotic interactions hypothesis to consider both latitudinal patterns in interaction strength and evolutionary responses to these interactions.

scholarly journals Through 40.000 Years of Human Presence in Southern Europe: The Italian Case Study

2021 ◽  
Author(s):  
Serena Aneli ◽  
Matteo Caldon ◽  
Tina Saupe ◽  
Francesco Montinaro ◽  
Luca Pagani
Keyword(s):  
Bronze Age ◽  
Iron Age ◽  
Current Knowledge ◽  
Western Mediterranean ◽  
Future Research ◽  
Human Occupation ◽  
Hunter Gatherers ◽  
Italian Case ◽  
Open Questions

The Italian Peninsula, a natural pier across the Mediterranean Sea, witnessed intricate population events since the very beginning of human occupation in Europe. In the last few years, an increasing number of modern and ancient genomes from the area has been published by the international research community. This genomic perspective started unveiling the relevance of Italy to understand the post-Last Glacial Maximum (LGM) re-peopling of Europe, the earlier phase of the Neolithic westward migrations, and its linking role between Eastern and Western Mediterranean areas after the Iron Age. However many open questions are still waiting for more data to be addressed in full. With this review, we summarize the current knowledge emerging from the available ancient Italian individuals and, by re-analysing them all at once, we try to shed light on the avenues future research in the area should cover. In particular, open questions concern i) the fate of pre-Villabruna Europeans and to what extent their genomic components were absorbed by the post-LGM hunter-gatherers; ii) the role of Sicily and Sardinia before LGM; iii) to what degree the documented genetic structure within the Early Neolithic settlers can be described as two separate migrations; iv) what are the population events behind the marked presence of an Iranian Neolithic-like component in Bronze Age and Iron Age Italian and Southern European samples.

Organisational efficacy and the role of management control system in construction industry

2017 ◽  
Vol 5 (4) ◽  
pp. 51
Author(s):  
Nur Arfah Mustapha ◽  
Roshidi Hassan
Keyword(s):  
Control System ◽  
Management Control ◽  
Future Research ◽  
Management Control System ◽  
New Directions ◽  
Research Plan ◽  
Research Stream ◽  
New Research ◽  
Work Done

Management control system is putatively vital for management to resemble organisational performance.The objective of the study is to understand the role of management control system in organisational efficacy. Management control system has obtained growing attention within both academia and industry as part of OE. As works of literature grow, finding new directions by critically evaluating the research and identifying future trends has become central in advancing knowledge for the field. This paper will review some of the work done in this area of study. Applying management control system as a theoretical lens, we develop a research plan from current OE and management control system literature by offering propositions for future research where management control system may permeate contemporary OE topics. In doing so, we provide an initial foundation for organisational efficacy scholars to both incorporate the role of management control system effects into research and launch new research stream.

Cortical correlates of amblyopia

2018 ◽  
Vol 35 ◽  
Author(s):  
LYNNE KIORPES ◽  
NIGEL DAW
Keyword(s):  
Binocular Vision ◽  
Visual Processing ◽  
Vision Loss ◽  
Extrastriate Cortex ◽  
Future Research ◽  
Visual Deficits ◽  
Sensitivity Loss ◽  
Open Questions ◽  
Oculomotor Abnormalities

AbstractThere are many levels of disorder in amblyopic vision, from basic acuity and contrast sensitivity loss to abnormal binocular vision and global perception of motion and form. Amblyopia treatment via patching to restore acuity often leaves other aspects of vision deficient. The source for these additional deficits is unclear. Neural correlates of poor binocular function and acuity loss are found in V1 and V2. However, they are generally not sufficient to account for behaviorally measured vision loss. This review summarizes the known cortical correlates of visual deficits found in association with amblyopia, particularly those relevant to binocular vision and higher-order visual processing, in striate and extrastriate cortex. Recommendations for future research address open questions on the role of suppression and oculomotor abnormalities in amblyopic vision, and underexplored mechanisms such as top-down influences on information transmission in the amblyopic brain.

Interactions between species and the structure of helminth communities

Parasitology ◽  
2001 ◽  
Vol 122 (S1) ◽  
pp. S3-S11 ◽  
Author(s):  
R. POULIN
Keyword(s):  
Species Interactions ◽  
Interspecific Interactions ◽  
Parasite Community ◽  
Helminth Species ◽  
Gastrointestinal Helminth ◽  
Helminth Communities ◽  
General Importance ◽  
Random Patterns ◽  
Case Basis

The role of interspecific interactions in the structure of gastrointestinal helminth communities has been at the core of most research in parasite community ecology, yet there is no consensus regarding their general importance. There have been two different approaches to the study of species interactions in helminths. The first one consists of measuring the responses of helminth species in concomitant infections, preferably in laboratory experiments. Any change in numbers of parasite individuals or in their use of niche space, compared with what is observed in single infections, provides solid evidence that the species are interacting. The second approach can only provide indirect, circumstantial evidence. It consists in contrasting observed patterns either in the distribution of species richness of infracommunities from wild hosts, in their species composition, or in pairwise associations between helminth species among infracommunities, with the random patterns predicted by appropriate null models. In many cases, observed patterns do not depart from predicted ones; when they do, alternative explanations are usually as plausible as invoking the effect of interactions among helminth species. The present evidence suggests that the role of species interactions in helminth community structure is often negligible, but that it must always be evaluated on a case-by-case basis.

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