Population Models, Not Analyses, of Human Neuroscience Measurements

2021 ◽  
Vol 7 (1) ◽  
Author(s):  
Justin L. Gardner ◽  
Elisha P. Merriam

Selectivity for many basic properties of visual stimuli, such as orientation, is thought to be organized at the scale of cortical columns, making it difficult or impossible to measure directly with noninvasive human neuroscience measurement. However, computational analyses of neuroimaging data have shown that selectivity for orientation can be recovered by considering the pattern of response across a region of cortex. This suggests that computational analyses can reveal representation encoded at a finer spatial scale than is implied by the spatial resolution limits of measurement techniques. This potentially opens up the possibility to study a much wider range of neural phenomena that are otherwise inaccessible through noninvasive measurement. However, as we review in this article, a large body of evidence suggests an alternative hypothesis to this superresolution account: that orientation information is available at the spatial scale of cortical maps and thus easily measurable at the spatial resolution of standard techniques. In fact, a population model shows that this orientation information need not even come from single-unit selectivity for orientation tuning, but instead can result from population selectivity for spatial frequency. Thus, a categorical error of interpretation can result whereby orientation selectivity can be confused with spatial frequency selectivity. This is similarly problematic for the interpretation of results from numerous studies of more complex representations and cognitive functions that have built upon the computational techniques used to reveal stimulus orientation. We suggest in this review that these interpretational ambiguities can be avoided by treating computational analyses as models of the neural processes that give rise to measurement. Building upon the modeling tradition in vision science using considerations of whether population models meet a set of core criteria is important for creating the foundation for a cumulative and replicable approach to making valid inferences from human neuroscience measurements. Expected final online publication date for the Annual Review of Vision Science, Volume 7 is September 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.

Perception ◽  
1997 ◽  
Vol 26 (9) ◽  
pp. 1101-1120 ◽  
Author(s):  
Lynn A Olzak ◽  
Thomas D Wickens

Real-world objects are complex, containing information at multiple orientations and spatial scales. It is well established that at initial cortical stages of processing, local information about an image is separately represented at multiple spatial scales. However, it is not yet established how these early representations are later integrated across scale to signal useful information about complex stimulus features, such as edges and textures. In the studies reported here, we investigate the scale-integration processes involved in distinguishing among complex patterns. We use a concurrent-response paradigm in which observers simultaneously judge two components of compound gratings that differ widely in spatial frequency. In different experiments, each component takes one of two slightly different values along the dimensions of spatial frequency, contrast, or orientation. Using analyses developed within the framework of a multivariate extension of signal-detection theory, we ask how information about the frequency, contrast, or orientation of the components is or is not integrated across the two grating components. Our techniques permit us to isolate and identify interactions due to excitatory or inhibitory processes from effects due to noise, and to separately assess any attentional limitations that might occur in processing. Results indicate that orientation information is fully integrated across spatial scales within a limited orientation band and that decisions are based entirely on the summed information. Information about spatial frequency and contrast is not summed over spatial scale; cross-scale results show sensory independence. However, our results suggest that observers cannot simultaneously use information about frequency or contrast when it is presented at different spatial scales. Our results provide direct evidence for the existence of a higher-level summing circuit tailored to signal information about orientation. The properties of this mechanism differ substantially from edge-detector mechanisms proposed by Marr and others.


1998 ◽  
Vol 15 (4) ◽  
pp. 585-595 ◽  
Author(s):  
CONG YU ◽  
DENNIS M. LEVI

A psychophysical analog to cortical receptive-field end-stopping has been demonstrated previously in spatial filters tuned to a wide range of spatial frequencies (Yu & Levi, 1997a). The current study investigated tuning characteristics in psychophysical spatial filter end-stopping. When a D6 (the sixth derivative of a Gaussian) target is masked by a center mask (placed in the putative spatial filter center), two end-zone masks (placed in the filter end-zones) reduce thresholds. This “end-stopping” effect (the reduction of masking induced by end-zone masks) was measured at various spatial frequencies and orientations of end-zone masks. End-stopping reached its maximal strength when the spatial frequency and/or orientation of the end-zone masks matched the spatial frequency and/or orientation of the target and center mask, showing spatial-frequency tuning and orientation tuning. The bandwidths of spatial-frequency and orientation tuning functions decreased with increasing target spatial frequency. At larger orientation differences, however, end-zone masks induced a secondary facilitation effect, which was maximal when the spatial frequency of end-zone masks equated the target spatial frequency. This facilitation effect might be related to certain types of contour and texture perception, such as perceptual pop-out.


2021 ◽  
Vol 7 (1) ◽  
Author(s):  
Laura Campello ◽  
Nivedita Singh ◽  
Jayshree Advani ◽  
Anupam K. Mondal ◽  
Ximena Corso-Diaz ◽  
...  

Multifaceted and divergent manifestations across tissues and cell types have curtailed advances in deciphering the cellular events that accompany advanced age and contribute to morbidities and mortalities. Increase in human lifespan during the past century has heightened awareness of the need to prevent age-associated frailty of neuronal and sensory systems to allow a healthy and productive life. In this review, we discuss molecular and physiological attributes of aging of the retina, with a goal of understanding age-related impairment of visual function. We highlight the epigenome–metabolism nexus and proteostasis as key contributors to retinal aging and discuss lifestyle changes as potential modulators of retinal function. Finally, we deliberate promising intervention strategies for promoting healthy aging of the retina for improved vision. Expected final online publication date for the Annual Review of Vision Science, Volume 7 is September 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.


2019 ◽  
Author(s):  
Marie Tolkiehn ◽  
Simon R. Schultz

AbstractOrientation tuning in mouse primary visual cortex (V1) has long been reported to have a random or “salt-and-pepper” organisation, lacking the structure found in cats and primates. Laminar in-vivo multi-electrode array recordings here reveal previously elusive structure in the representation of visual patterns in the mouse visual cortex, with temporo-nasally drifting gratings eliciting consistently highest neuronal responses across cortical layers and columns, whilst upward moving gratings reliably evoked the lowest activities. We suggest this bias in direction selectivity to be behaviourally relevant as objects moving into the visual field from the side or behind may pose a predatory threat to the mouse whereas upward moving objects do not. We found furthermore that direction preference and selectivity was affected by stimulus spatial frequency, and that spatial and directional tuning curves showed high signal correlations decreasing with distance between recording sites. In addition, we show that despite this bias in direction selectivity, it is possible to decode stimulus identity and that spatiotemporal features achieve higher accuracy in the decoding task whereas spike count or population counts are sufficient to decode spatial frequencies implying different encoding strategies.Significance statementWe show that temporo-nasally drifting gratings (i.e. opposite the normal visual flow during forward movement) reliably elicit the highest neural activity in mouse primary visual cortex, whereas upward moving gratings reliably evoke the lowest responses. This encoding may be highly behaviourally relevant, as objects approaching from the periphery may pose a threat (e.g. predators), whereas upward moving objects do not. This is a result at odds with the belief that mouse primary visual cortex is randomly organised. Further to this biased representation, we show that direction tuning depends on the underlying spatial frequency and that tuning preference is spatially correlated both across layers and columns and decreases with cortical distance, providing evidence for structural organisation in mouse primary visual cortex.


Author(s):  
Tobias Weidner ◽  
David G. Castner

Proteins at surfaces and interfaces play important roles in the function and performance of materials in applications ranging from diagnostic assays to biomedical devices. To improve the performance of these materials, detailed molecular structure (conformation and orientation) along with the identity and concentrations of the surface-bound proteins on those materials must be determined. This article describes radiolabeling, surface plasmon resonance, quartz crystal microbalance with dissipation, X-ray photoelectron spectroscopy, secondary ion mass spectrometry, sum frequency generation spectroscopy, and computational techniques along with the information each technique provides for characterizing protein films. A multitechnique approach using both experimental and computation methods is required for these investigations. Although it is now possible to gain much insight into the structure of surface-bound proteins, it is still not possible to obtain the same level of structural detail about proteins on surfaces as can be obtained about proteins in crystals and solutions, especially for large, complex proteins. However, recent results have shown it is possible to obtain detailed structural information (e.g., backbone and side chain orientation) about small peptides (5–20 amino sequences) on surfaces. Current studies are extending these investigations to small proteins such as protein G B1 (∼6 kDa). Approaches for furthering the capabilities for characterizing the molecular structure of surface-bound proteins are proposed. Expected final online publication date for the Annual Review of Analytical Chemistry, Volume 14 is August 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.


2021 ◽  
Vol 7 (1) ◽  
Author(s):  
Maureen G. Maguire

Clinical trials for conditions affecting the visual system need to not only conform to the guidelines for all clinical trials, but also accommodate the possibility of both eyes of a single patient qualifying for the trial. In this review, I present the interplay of the key components in the design of a clinical trial, along with the modifications or options that may be available for trials addressing ocular conditions. Examples drawn from published reports of the design and results of clinical trials of ocular conditions are provided to illustrate application of the design principles. Current approaches to data analysis and reporting of trials are outlined, and the oversight and regulatory procedures to protect participants in clinical trials are discussed. Expected final online publication date for the Annual Review of Vision Science, Volume 7 is September 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.


Perception ◽  
1973 ◽  
Vol 2 (1) ◽  
pp. 53-60 ◽  
Author(s):  
J A Movshon ◽  
C Blakemore

An adaptation method is used to determine the orientation specificity of channels sensitive to different spatial frequencies in the human visual system. Comparison between different frequencies is made possible by a data transformation in which orientational effects are expressed in terms of equivalent contrast (the contrast of a vertical grating producing the same adaptational effect as a high-contrast grating of a given orientation). It is shown that, despite great variances in the range of orientations affected by adaptation at different spatial frequencies (±10° to ±50°), the half-width at half-amplitude of the orientation channels does not vary systematically as a function of spatial frequency over the range tested (2·5 to 20 cycles deg−1). Two subjects were used and they showed significantly different orientation tuning across the range of spatial frequencies. The results are discussed with reference to previous determinations of orientation specificity, and to related psychophysical and neurophysiological phenomena.


1994 ◽  
Vol 11 (4) ◽  
pp. 805-821 ◽  
Author(s):  
James P. Gaska ◽  
Lowell D. Jacobson ◽  
Hai-Wen Chen ◽  
Daniel A. Pollen

AbstractWhite noise stimuli were used to estimate second-order kernels for complex cells in cortical area VI of the macaque monkey, and drifting grating stimuli were presented to the same sample of neurons to obtain orientation and spatial-frequency tuning curves. Using these data, we quantified how well second-order kernels predict the normalized tuning of the average response of complex cells to drifting gratings.The estimated second-order kernel of each complex cell was transformed into an interaction function defined over all spatial and temporal lags without regard to absolute position or delay. The Fourier transform of each interaction function was then computed to obtain an interaction spectrum. For a cell that is well modeled by a second-order system, the cell’s interaction spectrum is proportional to the tuning of its average spike rate to drifting gratings. This result was used to obtain spatial-frequency and orientation tuning predictions for each cell based on its second-order kernel. From the spatial-frequency and orientation tuning curves, we computed peaks and bandwidths, and an index for directional selectivity.We found that the predictions derived from second-order kernels provide an accurate description of the change in the average spike rate of complex cells to single drifting sine–wave gratings. These findings are consistent with a model for complex cells that has a quadratic spectral energy operator at its core but are inconsistent with a spectral amplitude model.


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