scholarly journals Comparative Analysis of Context-Dependent Mutagenesis in Humans and Fruit Flies

2013 ◽  
Vol 2013 ◽  
pp. 1-6 ◽  
Author(s):  
Sofya A. Medvedeva ◽  
Alexander Y. Panchin ◽  
Andrey V. Alexeevski ◽  
Sergey A. Spirin ◽  
Yuri V. Panchin

In general, mutation frequencies are context-dependent: specific adjacent nucleotides may influence the probability to observe a specific type of mutation in a genome. Recently, several hypermutable motifs were identified in the human genome. Namely, there is an increased frequency of T>C mutations in the second position of the words ATTG and ATAG and an increased frequency of A>C mutations in the first position of the word ACAA. Previous studies have also shown that there is a remarkable difference between the mutagenesis of humans and drosophila. While C>T mutations are overrepresented in the CG context in humans (and other vertebrates), this mutation regularity is not observed inDrosophila melanogaster. Such differences in the observed regularities of mutagenesis between representatives of different taxa might reflect differences in the mechanisms involved in mutagenesis. We performed a systematical comparison of mutation regularities within 2–4 bp contexts inHomo sapiensandDrosophila melanogasterand found that the aforementioned contexts are not hypermutable in fruit flies. It seems that most mutation contexts affect mutation rates in a similar manner inH. sapiensandD. melanogaster; however, several important exceptions are noted and discussed.

Genes ◽  
2020 ◽  
Vol 12 (1) ◽  
pp. 30
Author(s):  
Perrine Pégorier ◽  
Morgane Bertignac ◽  
Viviane Nguefack Ngoune ◽  
Géraldine Folch ◽  
Joumana Jabado-Michaloud ◽  
...  

The adaptive immune response provides the vertebrate immune system with the ability to recognize and remember specific pathogens to generate immunity, and mount stronger attacks each time the pathogen is encountered. T cell receptors are the antigen receptors of the adaptive immune response expressed by T cells, which specifically recognize processed antigens, presented as peptides by the highly polymorphic major histocompatibility (MH) proteins. T cell receptors (TR) are divided into two groups, αβ and γδ, which express distinct TR containing either α and β, or γ and δ chains, respectively. The TRα locus (TRA) and TRδ locus (TRD) of bovine (Bos taurus) and the sheep (Ovis aries) have recently been described and annotated by IMGT® biocurators. The aim of the present study is to present the results of the biocuration and to compare the genes of the TRA/TRD loci among these ruminant species based on the Homo sapiens repertoire. The comparative analysis shows similarities but also differences, including the fact that these two species have a TRA/TRD locus about three times larger than that of humans and therefore have many more genes which may demonstrate duplications and/or deletions during evolution.


Evolution ◽  
2020 ◽  
Author(s):  
Eevi Savola ◽  
Clara Montgomery ◽  
Fergal M. Waldron ◽  
Katy M. Monteith ◽  
Pedro Vale ◽  
...  

2019 ◽  
Vol 8 (4) ◽  
pp. 662-676 ◽  
Author(s):  
Denis Cohen

AbstractWhat attracts voters to far-right parties? Emphasizing the repercussions of far-right parties' past achievements on the mobilization of voters' electoral demand, this paper develops an argument of context-dependent strategic far-right voting. Far-right parties seek to mobilize on a combination of demand for nativist policies and anti-establishment protest sentiment. Their capacity of doing so, however, critically depends on the strategic incentives they supply. My findings from a comparative analysis based on six waves of the European Election Study show that far-right parties' past attainment of legislative strength boosts the credibility of their policy appeal and broadens the scope of their protest appeal whereas their participation in government jeopardizes their capacity to mobilize on popular discontent.


Genetics ◽  
2017 ◽  
Vol 206 (3) ◽  
pp. 1429-1443 ◽  
Author(s):  
Dahong Chen ◽  
Tingting Gu ◽  
Tom N. Pham ◽  
Montgomery J. Zachary ◽  
Randall S. Hewes

Author(s):  
A. K. Sarbhoy

Abstract A description is provided for Rhizopus stolonifer. Information is included on the disease caused by the organism, its transmission, geographical distribution, and hosts. HOSTS: On fruits: papaya, plum, strawberry, sweet potato, cotton, groundnuts and in rhizosphere soil of various plants, soil and decaying leaves. DISEASE: Causing fruit rot of plum, Jak fruit (Artocarpus integrifolia[Artocarpus integer]), strawberry ('leak'), peach and a rot of sweet potato (Ipomoea batatas) and cotton bolls. GEOGRAPHICAL DISTRIBUTION: World-wide. TRANSMISSION: Air-borne and also by fruit flies, Drosophila melanogaster, associated with decaying fruit (RAM 43, 576).


2021 ◽  
Vol 2 (1) ◽  
pp. 26-37
Author(s):  
O.O. Dosumu ◽  
◽  
E.N. Akang ◽  
O.K. Idowu ◽  
G.J. Adeyemi

Background: Parkinson's disease (PD) is a multifactorial neurodegenerative disease with pathogenic mechanisms traceable to oxidative damage and mitochondrial dysfunction. Rotenone, a chemical compound commonly found in pesticides, has been found to inhibit mitochondrial complex-I and initiate PD-like symptoms in mammals and several invertebrates. Virgin Coconut Oil (VCNO) obtained from the coconut fruit has been found to possess anti-oxidative and anti-inflammatory properties. Objectives: The present study evaluated the effect of VCNO on rotenone-induced Parkinsonism in fruit flies- Drosophila melanogaster (D. melanogaster). Methods: Canton special (CS) strains of D. melanogaster, aged between 1 to 3 days were orally exposed for 7 days to 0, 250, 500 and 750 μM rotenone diet for toxicity assay, and 0, 2.5, 5 and 10 % w/w VCNO diet for longevity assay. Thereafter, 5 % VCNO diet was selected for evaluation against 500 μM rotenone. Subsequently, behavioural test (negative geotaxis), markers for redox status and enzyme activities were evaluated. Results: The results showed that rotenone induced toxicity in the flies, while VCNO increased the lifespan of D. melanogaster in a dose-dependent manner. In addition, VCNO ameliorated rotenone-induced locomotor deficits, elevated MDA, as well as the depleted GSH levels. It also mitigated the inhibited activities of SOD, CAT and ATPase in the flies. Conclusions: VCNO protected D. melanogaster against rotenone-induced toxicity by extending longevity, preventing locomotor deficits and reducing oxidative stress.


2016 ◽  
Vol 283 (1841) ◽  
pp. 20161785 ◽  
Author(s):  
Long Wang ◽  
Yanchun Zhang ◽  
Chao Qin ◽  
Dacheng Tian ◽  
Sihai Yang ◽  
...  

Mutation rates and recombination rates vary between species and between regions within a genome. What are the determinants of these forms of variation? Prior evidence has suggested that the recombination might be mutagenic with an excess of new mutations in the vicinity of recombination break points. As it is conjectured that domesticated taxa have higher recombination rates than wild ones, we expect domesticated taxa to have raised mutation rates. Here, we use parent–offspring sequencing in domesticated and wild peach to ask (i) whether recombination is mutagenic, and (ii) whether domesticated peach has a higher recombination rate than wild peach. We find no evidence that domesticated peach has an increased recombination rate, nor an increased mutation rate near recombination events. If recombination is mutagenic in this taxa, the effect is too weak to be detected by our analysis. While an absence of recombination-associated mutation might explain an absence of a recombination–heterozygozity correlation in peach, we caution against such an interpretation.


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