First report of Bursaphelenchus xylophilus in Portugal and in Europe

Nematology ◽  
1999 ◽  
Vol 1 (7) ◽  
pp. 727-734 ◽  
Author(s):  
Manuel M. Mota ◽  
Helen Braasch ◽  
Maria Antonia Bravo ◽  
Ana Catarina Penas ◽  
Wolfgang Burgermeister ◽  
...  
Keyword(s):  
Pinus Pinaster ◽  
Rflp Analysis ◽  
Restriction Enzymes ◽  
Bursaphelenchus Xylophilus ◽  
Female Tail ◽  
Dna Fragment ◽  
Species Specific ◽  
First Time ◽  
Very High ◽  
Pin Maritime

AbstractA survey of aphelenchid nematodes (Nematoda: Aphelenchida) associated with maritime pine, Pinus pinaster, was conducted in Portugal in 1996 and 1999. A Bursaphelenchus species has been identified for the first time in the Iberian Peninsula. B. xylophilus is reported for the first time in Europe. It was found in very high numbers - up to 38 000 per 10 g of pine wood - inside a few declining trees infested with curculionid, cerambycid and scolytid beetles. Morphological observations, including shape of spicules, bursa, vulva, female tail end and stylet as well as morphometrics, were in accordance with the species description. Species-specific DNA fragment patterns were obtained using ITS-RFLP analysis, with five different restriction enzymes. The importance and implications of this finding are discussed. Premiere signalisation de Bursaphelenchus xylophilus au Portugal, at en Europe - Une enquete sur les nematodes Aphelenchides (Nematoda: Aphelenchida) associes au pin maritime (Pinus pinaster) a ete realisee au Portugal de 1996 a 1999. Une espece de Bursaphelenchus a ete identifiee pour la premiere fois dans la Peninsule Iberique. B. xylophilus est signale pour la premiere fois en Europe. Il a ete trouve en tres grand nombre - jusqu'a 38 000 individus pour 10 g de bois de pin - dans des arbres deperissants infestes par des Coleopteres Curculionides, Cerambycides et Scolytides. Les observations concernant la morphologie - en particulier la forme des spicules, la bourse, la vulve, l'extremite de la queue de la femelle et le stylet - de meme que les donnees morphometriques correspondent a la description de l'espece. Des sequences de fragments d'ADN specifique de l'espece ont ete obtenus par analyse ITS-RFLP a l'aide de cinq enzymes de restriction. L'importance et les implications de cette decouverte sont discutees.

scholarly journals The pinewood nematode, Bursaphelenchus xylophilus, in Madeira Island

2012 ◽  
Vol 49 (2) ◽  
pp. 96-103 ◽  
Author(s):  
L. Fonseca ◽  
J. Cardoso ◽  
A. Lopes ◽  
M. Pestana ◽  
F. Abreu ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Phylogenetic Analysis ◽  
Rflp Analysis ◽  
Bursaphelenchus Xylophilus ◽  
Genomic Region ◽  
Pinewood Nematode ◽  
Madeira Island ◽  
Female Tail ◽  
Its Regions ◽  
Species Specific

AbstractThe environmental conditions in Madeira Island are favorable for the presence and dissemination of the pinewood nematode (PWN), Bursaphelenchus xylophilus. Five hundred Pinus pinaster wood samples were collected in several forest areas and PWN was detected in 22.8 % of the samples. Bursaphelenchus xylophilus isolates from Madeira Island displayed the species-specific diagnostic characters. A morphological variation in the female tail terminus was detected. In most females, the tail presented a broadly rounded terminus and, occasionally, a digitate terminus with a terminal nipple-like extension resembling a mucro. PCR ITS-RFLP analysis revealed that Madeira Island isolates exhibited patterns specific to the species B. xylophilus and similar to virulent isolates. Amplified ITS regions were further sequenced and no genetic diversity was found for this genomic region among 17 Portuguese isolates (Madeira Island and Continental Portugal). Phylogenetic analysis revealed that Portuguese isolates grouped with isolates from China, Korea and one isolate from Japan.

PCR-based genetic identification of marlin and other billfish

1998 ◽  
Vol 49 (5) ◽  
pp. 383 ◽  
Author(s):  
B. H. Innes ◽  
P. M. Grewe ◽  
R. D. Ward
Keyword(s):  
Mitochondrial Dna ◽  
Genetic Test ◽  
Rflp Analysis ◽  
Restriction Enzymes ◽  
Genetic Identification ◽  
Dna Molecule ◽  
Pcr Rflp ◽  
D Loop ◽  
Specific Variation ◽  
Species Specific

A genetic test was developed for the identification of the six species of billfish found in Australian waters (black marlin, Indo–Pacific blue marlin, striped marlin, Indo–Pacific sailfish, shortbill spearfish and broadbill swordfish). The test was based on the PCR–RFLP analysis of a 1400 bp region of the mitochondrial DNA molecule, the d-loop, using four restriction enzymes (Hinf I, Rsa I and Sau3A I andTaq I). A total of 33 composite haplotypes were observed among 160 fish; all were species-specific. Three of the species—black marlin, striped marlin and broadbill swordfish—showed sufficient intra-specific variation to be useful in population structure analyses.

Rapid identification of Amaranthus caudatus and Amaranthus hypochondriacus by sequencing and PCR–RFLP analysis of two starch synthase genes

Genome ◽  
2012 ◽  
Vol 55 (8) ◽  
pp. 623-628 ◽  
Author(s):  
Young-Jun Park ◽  
Tomotaro Nishikawa
Keyword(s):  
Rflp Analysis ◽  
Restriction Enzymes ◽  
Rapid Identification ◽  
Starch Synthase ◽  
Amaranthus Caudatus ◽  
Grain Amaranth ◽  
Amaranthus Hypochondriacus ◽  
Pcr Rflp ◽  
Cultivated Species ◽  
Species Specific

The objective of this study was to develop a PCR–RFLP method to identity the cultivated species of grain amaranth based on variations in the sequences of their starch synthase genes. We sequenced the SSSI and GBSSI loci in 126 accessions of cultivated grain amaranth collected from diverse locations around the world. We aligned the gene sequences and searched for restriction enzyme cleavage sites specific to each species for use in the PCR–RFLP analysis. Our analyses indicated that EcoRI would recognize the sequence 5′-GAATT/C-3′ in the SSSI gene from Amaranthus caudatus L., and TaqI would recognize the sequence 5′-T/CGA-3′ in the GBSSI gene from Amaranthus hypochondriacus L. The PCR products obtained using gene-specific primers were 423 bp (SSSI) and 627 or 635 bp (GBSSI) in length. These products were cut with different restriction enzymes resulting in species-specific RFLP patterns that could be used to distinguish among the cultivated grain amaranths. The results clearly showed that A. caudatus and A. hypochondriacus were easily differentiated at the species level using this method. Therefore, the PCR–RFLP method targeting amaranth starch synthase genes is simple and rapid, and it will be a useful tool for the identification of cultivated species of grain amaranth.

ITS-RFLP analysis, an efficient tool for differentiation of Bursaphelenchus species

Nematology ◽  
2009 ◽  
Vol 11 (5) ◽  
pp. 649-668 ◽  
Author(s):  
Wolfgang Burgermeister ◽  
Helen Braasch ◽  
Kai Metge ◽  
Jianfeng Gu ◽  
Thomas Schröder ◽  
...  
Keyword(s):  
Tandem Repeats ◽  
Restriction Analysis ◽  
Rflp Analysis ◽  
Restriction Enzymes ◽  
Its Sequence ◽  
Additional Species ◽  
New Information ◽  
Specific Fragment ◽  
Species Specific ◽  
Different Origins

Abstract Restriction analysis of amplified ribosomal ITS sequences has provided species-specific fragment patterns for nematodes of several genera, including Bursaphelenchus. We used restriction enzymes RsaI, HaeIII, MspI, HinfI and AluI to produce ITS-RFLP reference profiles of 44 Bursaphelenchus species, including two intraspecific types in each of B. mucronatus and B. leoni. In addition, reference profiles of Aphelenchoides stammeri and Ruehmaphelenchus asiaticus were produced. Reference profiles of six species are shown here for the first time. Identical ITS-RFLP patterns were usually obtained from different isolates and from individual specimens of the same species. However, in the case of B. 'corneolus', B. lini, B. singaporensis and B. sexdentati, additional bands in the patterns of certain isolates or individual nematodes were observed which may be explained by ITS sequence microheterogeneity, i.e., the presence of ITS sequence variants within the number of rDNA tandem repeats. Since these 'extra' bands appeared only with one out of the five restriction enzymes employed, they did not seriously impair identification of species based on the overall reference patterns. ITS-RFLP analysis has proved valuable for differentiation of the pathogenic pine wood nematode, B. xylophilus, from related species. In many recent descriptions of new Bursaphelenchus species, ITS-RFLP profiles have been used as additional species identification criteria. Comparison of profiles from isolates of many different origins has provided new information on intraspecific types or genetically distinct provenances of several Bursaphelenchus species.

scholarly journals Morphometrical and molecular characterization of Bursaphelenchus species from Slovenia

2007 ◽  
Vol 44 (2) ◽  
pp. 37-42 ◽  
Author(s):  
G. Urek ◽  
S. Širca ◽  
B. Geric
Keyword(s):  
Molecular Characterization ◽  
Ribosomal Dna ◽  
Environmental Conditions ◽  
Rflp Analysis ◽  
Bursaphelenchus Xylophilus ◽  
Pine Wood Nematode ◽  
Pathogenic Species ◽  
Conifer Forests ◽  
First Time

AbstractThe environmental conditions in Slovenia are relatively favourrable for the colonisation and spread of the pine wood nematode Bursaphelenchus xylophilus, a very dangerous pathogenic species which was recently identified in Europe in Portugal. To determine the presence of B. xylophilus in Slovenia and to introduce proper measures against its emergence and spread, a survey of Bursaphelenchus species was conducted in Slovenia from 2002 to 2005. Approximately 120 ha of conifer forests in Slovenia were surveyed for the presence of Bursaphelenchus species. In total, 206 wood samples were taken from the conifer forests. B. hofmanni, B. mucronatus were found for the first time in Slovenia, while B. xylophilus was not detected. Additionally, the species Aphelenchoides stammeri which is morphologically very similar to Bursaphelencus was found. All species have been described morphologically and characterized by ITS-RFLP analysis. Sequences of ribosomal DNA for B. hofmanni, B. mucronatus were analysed.

scholarly journals Shell-crossing in a ΛCDM Universe

2020 ◽  
Vol 501 (1) ◽  
pp. L71-L75
Author(s):  
Cornelius Rampf ◽  
Oliver Hahn
Keyword(s):  
Dark Matter ◽  
Perturbation Theory ◽  
Large Scale ◽  
Cold Dark Matter ◽  
Three Dimensional ◽  
Random Initial Data ◽  
Recursion Relations ◽  
Indispensable Tool ◽  
First Time ◽  
Very High

ABSTRACT Perturbation theory is an indispensable tool for studying the cosmic large-scale structure, and establishing its limits is therefore of utmost importance. One crucial limitation of perturbation theory is shell-crossing, which is the instance when cold-dark-matter trajectories intersect for the first time. We investigate Lagrangian perturbation theory (LPT) at very high orders in the vicinity of the first shell-crossing for random initial data in a realistic three-dimensional Universe. For this, we have numerically implemented the all-order recursion relations for the matter trajectories, from which the convergence of the LPT series at shell-crossing is established. Convergence studies performed at large orders reveal the nature of the convergence-limiting singularities. These singularities are not the well-known density singularities at shell-crossing but occur at later times when LPT already ceased to provide physically meaningful results.

scholarly journals Bark traits, decomposition and flammability of Australian forest trees

2017 ◽  
Vol 65 (4) ◽  
pp. 327 ◽  
Author(s):  
Saskia Grootemaat ◽  
Ian J. Wright ◽  
Peter M. van Bodegom ◽  
Johannes H. C. Cornelissen ◽  
Veronica Shaw
Keyword(s):  
Forest Tree ◽  
Remarkable Feature ◽  
Interspecific Differences ◽  
Eucalypt Plantations ◽  
Physical Traits ◽  
Key Driver ◽  
Multiple Species ◽  
Species Specific ◽  
First Time ◽  
Different Tissues

Bark shedding is a remarkable feature of Australian trees, yet relatively little is known about interspecific differences in bark decomposability and flammability, or what chemical or physical traits drive variation in these properties. We measured the decomposition rate and flammability (ignitibility, sustainability and combustibility) of bark from 10 common forest tree species, and quantified correlations with potentially important traits. We compared our findings to those for leaf litter, asking whether the same traits drive flammability and decomposition in different tissues, and whether process rates are correlated across tissue types. Considerable variation in bark decomposability and flammability was found both within and across species. Bark decomposed more slowly than leaves, but in both tissues lignin concentration was a key driver. Bark took longer to ignite than leaves, and had longer mass-specific flame durations. Variation in flammability parameters was driven by different traits in the different tissues. Decomposability and flammability were each unrelated, when comparing between the different tissue types. For example, species with fast-decomposing leaves did not necessarily have fast-decomposing bark. For the first time, we show how patterns of variation in decomposability and flammability of bark diverge across multiple species. By taking species-specific bark traits into consideration there is potential to make better estimates of wildfire risks and carbon loss dynamics. This can lead to better informed management decisions for Australian forests, and eucalypt plantations, worldwide.

scholarly journals Chitosan increases Pinus pinaster tolerance to the pinewood nematode (Bursaphelenchus xylophilus) by promoting plant antioxidative metabolism

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Marta Nunes da Silva ◽  
Carla S. Santos ◽  
Ana Cruz ◽  
Adrián López-Villamor ◽  
Marta W. Vasconcelos
Keyword(s):  
Phenolic Compounds ◽  
Pinus Pinaster ◽  
Plant Defence ◽  
Pine Wilt Disease ◽  
Bursaphelenchus Xylophilus ◽  
Nematode Population ◽  
Post Inoculation ◽  
Pinewood Nematode ◽  
Plant Tolerance ◽  
The Moment

AbstractThe pine wilt disease (PWD), for which no effective treatment is available at the moment, is a constant threat to Pinus spp. plantations worldwide, being responsible for significant economic and environmental losses every year. It has been demonstrated that elicitation with chitosan increases plant tolerance to the pinewood nematode (PWN) Bursaphelenchus xylophilus, the causal agent of the PWD, but the biochemical and genetic aspects underlying this response have not been explored. To understand the influence of chitosan in Pinus pinaster tolerance against PWN, a low-molecular-weight (327 kDa) chitosan was applied to mock- and PWN-inoculated plants. Nematode population, malondialdehyde (MDA), catalase, carotenoids, anthocyanins, phenolic compounds, lignin and gene expression related to oxidative stress (thioredoxin 1, TRX) and plant defence (defensin, DEF, and a-farnesene synthase, AFS), were analysed at 1, 7, 14, 21 and 28 days post-inoculation (dpi). At 28 dpi, PWN-infected plants elicited with chitosan showed a sixfold lower nematode population when compared to non-elicited plants. Higher levels of MDA, catalase, carotenoids, anthocyanins, phenolic compounds, and lignin were detected in chitosan-elicited plants following infection. The expression levels of DEF gene were higher in elicited plants, while TRX and AFS expression was lower, possibly due to the disease containment-effect of chitosan. Combined, we conclude that chitosan induces pine defences against PWD via modulation of metabolic and transcriptomic mechanisms related with plant antioxidant system.

scholarly journals The Morphological and Anatomical Traits of the Leaf in Representative Vinca Species Observed on Indoor- and Outdoor-Grown Plants

Plants ◽  
2021 ◽  
Vol 10 (4) ◽  
pp. 622
Author(s):  
Alexandra Ciorîță ◽  
Septimiu Cassian Tripon ◽  
Ioan Gabriel Mircea ◽  
Dorina Podar ◽  
Lucian Barbu-Tudoran ◽  
...  
Keyword(s):  
Spongy Parenchyma ◽  
Palisade And Spongy Parenchyma ◽  
Chemical Composition Of Plants ◽  
Ultrastructural Characteristics ◽  
Species Specific ◽  
Microscopy Techniques ◽  
First Time ◽  
Thick Layers ◽  
Space Ratio ◽  
Indoor And Outdoor

Morphological and anatomical traits of the Vinca leaf were examined using microscopy techniques. Outdoor Vinca minor and V. herbacea plants and greenhouse cultivated V. major and V. major var. variegata plants had interspecific variations. All Vinca species leaves are hypostomatic. However, except for V. minor leaf, few stomata were also present on the upper epidermis. V. minor leaf had the highest stomatal index and V. major had the lowest, while the distribution of trichomes on the upper epidermis was species-specific. Differentiated palisade and spongy parenchyma tissues were present in all Vinca species’ leaves. However, V. minor and V. herbacea leaves had a more organized anatomical aspect, compared to V. major and V. major var. variegata leaves. Additionally, as a novelty, the cellular to intercellular space ratio of the Vinca leaf’s mesophyll was revealed herein with the help of computational analysis. Lipid droplets of different sizes and aspects were localized in the spongy parenchyma cells. Ultrastructural characteristics of the cuticle and its epicuticular waxes were described for the first time. Moreover, thick layers of cutin seemed to be characteristic of the outdoor plants only. This could be an adaptation to the unpredictable environmental conditions, but nevertheless, it might influence the chemical composition of plants.

Étude de la sensibilisation au pollen de pin maritime (Pinus pinaster) dans la région bordelaise

2005 ◽  
Vol 45 (4) ◽  
pp. 298-302
Author(s):  
C. Nocent ◽  
C. Raherison ◽  
L. Portel ◽  
L. N'Guyen ◽  
M. Lheureux ◽  
...  
Keyword(s):  
Pinus Pinaster ◽  
Pin Maritime
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