Phylogeny and systematics of the endoparasitic astigmatid mites (Acari: Sarcoptiformes) of mammals: families Gastronyssidae, Lemurnyssidae, and Pneumocoptidae

Zootaxa ◽  
2008 ◽  
Vol 1951 (1) ◽  
pp. 1-152 ◽  
Author(s):  
ANDRE V. BOCHKOV ◽  
SVETLANA ZABLUDOVSKAYA ◽  
BARRY M. OCONNOR

We reconstruct the phylogenetic relationships of the mammal-associated endoparasitic mites belonging to 3 families, Gastronyssidae (42 species in 9 genera), Lemurnyssidae (4 species in 2 genera), and the monogeneric Pneumocoptidae (4 species) on the basis of maximum parsimony analysis of 120 morphological characters. In the strict consensus tree (all characters unordered and unweighted, Branch and Bound search option), these 3 families form a monophlyletic group with the first dichotomy between Pneumocoptidae-Lemurnyssidae and Gastronyssidae. The node joining these families is mainly supported by setal reductions. Such regressive characters alone provide relatively weak evidence for the monophyly of the group due to a greater probability of their homoplastic origin. On the other hand, the monophyly of each family is well supported by several progressive character changes. The family Gastronyssidae splits into 2 clusters. The first cluster represents the subfamily Yunkeracarinae and the second includes the subfamilies Gastronyssinae and Rodhoinyssinae. With respect to current classifications, there are 2 unexpected results in the tree: the position of the genus Gastronyssus Fain, 1955 (Gastronyssinae) within the core of the subfamily Rodhainyssinae and the polyphyly of the genus Opsonyssus Fain, 1959. The surprising placement of the genus Gastronyssus has the following explanation. In our data matrix, all distinctive derived character states characterizing this genus appear as autapomorphies and, therefore, do not affect the tree pattern. At the same time, these mites, being stomach parasites, exhibit the greatest degree of morphological reduction, including setae. Most of the character states shared with rodhainyssines are setal reductions and are of lesser reliability. The strict consensus of 14 trees obtained after successive weighting differs from the previous consensus tree mostly by the position of the genus Gastronyssus, which is the sister group to the all other rodhainyssine genera, excluding Phyllostomonyssus Fain, 1970. The genus Opsonyssus remained polyphyletic. We consider the 2 clusters observable in this tree as the subfamilies Yunkeracarinae (the genera Yunkeracarus Fain, 1957 and Sciuracarus Fain, 1964) and Gastronyssinae, respectively. The latter subfamily is divided onto 3 monophyletic lineages, which we rank as tribes: two monobasic tribes, Gastronyssini and Phyllostomonyssini tr. nov., and the tribe Rodhainyssini stat. nov., including the remaining genera, Eidolonyssus Fain, 1967, Mycteronyssus Fain, 1959, Opsonyssus, Rodhainyssus Fain, 1956, and the clade O. striatus Fain, 1967-O. phyllorhina Fain, 1959. A new genus Pseudoopsonyssus gen. nov. with species P. phyllorina (Fain, 1959) comb. nov. (type species), P. striatus (Fain, 1967) comb. nov., and P. zumpti (Fain, 1959) comb. nov. is established for this clade. The host-parasite associations of these endoparasitic mites are discussed, and a new hypothesis suggesting their secondary switching from the common ancestor of bats to myomorph rodents is proposed. Detailed taxonomic revisions of all 3 families based on examination of type materials are provided. Fifteen new species in 6 genera are described: Gastronyssus philippinensisBochkov et OConnor sp. nov., Rodhainyssus saccopteryx Bochkov et OConnor sp. nov., Opsonyssus pseudoindicus Bochkov et OConnor sp. nov., O. pteropodi Bochkov et OConnor sp. nov., O. klompeni Bochkov et OConnor sp. nov., O. macroglossus Bochkov et OConnor sp. nov., Mycteronyssus haplonycteri Bochkov et OConnor sp. nov., Eidolonyssus myersi Bochkov et OConnor sp. nov., Yunkeracarus apomys Bochkov et OConnor sp. nov., Y. rattus Bochkov et OConnor sp. nov., Y. limnomys Bochkov et OConnor sp. nov., Y. lophuromys Bochkov et OConnor sp. nov., Y. otomys Bochkov et OConnor sp. nov., Y. hylomyscus Bochkov et OConnor sp. nov., and Y. alticola Zabludovskaya sp. nov.

Zootaxa ◽  
2009 ◽  
Vol 2022 (1) ◽  
pp. 1-14 ◽  
Author(s):  
RAFAEL LEMAITRE ◽  
PATSY A. MCLAUGHLIN ◽  
ULF SORHANNUS

Phylogenetic relationships within the “symmetrical” hermit crab family Pylochelidae were analyzed for 41 of the 45 species and subspecies currently considered valid. In the analyses, 78 morphological characters comprised the data matrix and the outgroup consisted of Thalassina anomala, a member of the Thalassinidae, and Munida quadrispina, a member of the Galatheidae. A poorly resolved strict consensus tree was obtained from a heuristic parsimony analysis of unweighted and unordered characters, which showed the family Pylochelidae and the subfamilies Pylochelinae and Pomatochelinae to be monophyletic taxa – the latter two groups had the highest Bremer support values. Additionally, while the subgenus Pylocheles (Pylocheles) was strongly supported, the subgenera Xylocheles, and Bathycheles were not. More fully resolved trees were obtained when using implied weighting, which recognized the monotypic subfamilies Parapylochelinae, Cancellochelinae and Mixtopagurinae. The subfamily Trizochelinae was found to have four distinct clades and several ambiguously placed taxa.


2020 ◽  
Vol 96 (2) ◽  
pp. 637-637
Author(s):  
Karla D. A. Soares ◽  
Marcelo R. de Carvalho

The genus Scyliorhinus is part of the family Scyliorhinidae, the most diverse family of sharks and of the subfamily Scyliorhininae along with Cephaloscyllium and Poroderma. This study reviews the phylogenetic relationships of species of Scyliorhinus in the subfamily Scyliorhininae. Specimens of all Scyliorhinus species were examined as well as specimens of four of the 18 species of Cephaloscyllium, two species of Poroderma, representatives of almost all other catshark (scyliorhinid) genera and one proscylliid (Proscyllium habereri). A detailed morphological study, including external and internal morphology, morphometry and meristic data, was performed. From this study, a total of 84 morphological characters were compiled into a data matrix. Parsimony analysis was employed to generate hypotheses of phylogenetic relationships using the TNT 1.1. Proscyllium habereri was used to root the cladogram. The phylogenetic analysis, based on implied weighting (k = 3; 300 replications and 100 trees saved per replication), resulted in three equally most parsimonious cladograms with 233 steps, with a CI of 0.37 and an RI of 0.69. The monophyly of the subfamily Scyliorhininae is supported as well as of the genus Scyliorhinus, which is proposed to be the sister group of Cephaloscyllium. The phylogenetic relationships amongst Scyliorhinus species are presented for the frst time.


2020 ◽  
Vol 96 (2) ◽  
pp. 345-395
Author(s):  
Karla D. A. Soares ◽  
Marcelo R. de Carvalho

The genus Scyliorhinus is part of the family Scyliorhinidae, the most diverse family of sharks and of the subfamily Scyliorhininae along with Cephaloscyllium and Poroderma. This study reviews the phylogenetic relationships of species of Scyliorhinus in the subfamily Scyliorhininae. Specimens of all Scyliorhinus species were examined as well as specimens of four of the 18 species of Cephaloscyllium, two species of Poroderma, representatives of almost all other catshark (scyliorhinid) genera and one proscylliid (Proscyllium habereri). A detailed morphological study, including external and internal morphology, morphometry and meristic data, was performed. From this study, a total of 84 morphological characters were compiled into a data matrix. Parsimony analysis was employed to generate hypotheses of phylogenetic relationships using the TNT 1.1. Proscyllium habereri was used to root the cladogram. The phylogenetic analysis, based on implied weighting (k = 3; 300 replications and 100 trees saved per replication), resulted in three equally most parsimonious cladograms with 233 steps, with a CI of 0.37 and an RI of 0.69. The monophyly of the subfamily Scyliorhininae is supported as well as of the genus Scyliorhinus, which is proposed to be the sister group of Cephaloscyllium. The phylogenetic relationships amongst Scyliorhinus species are presented for the first time.


Zootaxa ◽  
2021 ◽  
Vol 5057 (1) ◽  
pp. 29-51
Author(s):  
SAMUEL GÓMEZ ◽  
FATEMEH NAZARI

A new genus, Arktourella gen. nov., is proposed to accommodate a new member of the harpacticoid family Normanellidae, A. margarethae gen. et sp. nov., from a polluted estuary in north-western Mexico. The new genus was attributed to the laophontoidean family Normanellidae on account of the lack of outer spinous processes on the second antennulary segment, one abexopodal seta on the antennary allobasis, four setae on the one-segmented antennary exopod, endopod of first swimming leg two-segmented with first segment elongated and with two distal elements on second segment, endopods of second to fourth legs two-segmented, distal setae on the male second endopodal segment of second and third legs reduced, and outer spine of the male second endopodal segment of third leg fused to segment. The new, so far monotypic genus, differs from the other normanellid genera in the presence of four elements on the third exopodal segment of the first leg, and two outer spines on the third exopodal segment of second to fourth legs. No synapomorphies were observed for Arktourella gen. nov. and Normanella, but they are unique within the Normanellidae in that the mandibular basis and endopod are not fused. Maximum parsimony analysis and Bayesian inference using 59 morphological characters to assess the relationships between the genera of the family Normanellidae confirmed the affinity of Arktourella gen. nov. and Normanella, and their sister group relationship with Sagamiella. Paranaiara and Pseudocletodes were shown consistently to be closely related and are the sister taxa of Normanella-Arktourella gen. nov.-Sagamiella. Arktourella gen. nov., Paranaiara and Pseudocletodes share the presence of a large spinulose spine on the fifth and sixth segments of the female antennule, but its significance is not clear. Additionally, we propose a key to the genera of the Normanellidae.  


PLoS ONE ◽  
2021 ◽  
Vol 16 (3) ◽  
pp. e0247747
Author(s):  
Alejandro Londoño-Burbano ◽  
Roberto E. Reis

We present a combined molecular and morphological phylogenetic analysis of the Loricariinae, with emphasis on the Harttiini (Cteniloricaria, Harttia, and Harttiella) and Farlowellini (Aposturisoma, Farlowella, Lamontichthys, Pterosturisoma, Sturisoma, and Sturisomatichthys). Character sampling comprised seven molecular markers (the mitochondrial Cytb, nd2, 12S and 16S, and the nuclear MyH6, RAG1 and RAG2) and 196 morphological characters. A total of 1,059 specimens, and 159 tissue samples were analized, representing 100 species. A Bayesian Inference analysis was performed using the concatenated data matrix, which is comprised of 6,819 characters. The Loricariinae were found to comprise the tribes (Hartiini (Loricariini, Farlowellini)), the latter two elevated from subtribes. A Maximum Parsimony analysis was also performed using the same data matrix in order to reveal phenotypical synapomorphies to diagnose each clade. Two MP trees were found with a length of 14,704 steps, consistency index of 0.29 and retention index of 0.61, which were summarized in a strict consensus tree. Harttiini includes (Harttiella (Cteniloricaria, Harttia), and Farlowellini includes (Lamontichthys (Pterosturisoma (Sturisoma (Sturisomatichthys, Farlowella)))). Aposturisoma was recovered nested within Farlowella and is synonymyzed to the latter. Sturisoma was corroborated as strictly cis-Andean, while Sturisomatichthys encompasses, besides the valid species already included in the genus, the trans-Andean species once belonging to Sturisoma sensu lato. Identification keys and phylogenetic diagnoses of family-group taxa and genera of both the Harttiini and the Farlowellini are provided.


2000 ◽  
Vol 78 (3) ◽  
pp. 351-360 ◽  
Author(s):  
Ana M Arambarri

The diagnostic characters of the genus Lotus L. are a claw with a thickened infolded margin, diadelphous stamens, and a style hardened from the base. This genus contains about 100 species that are distributed throughout the world. To investigate the phylogeny of the Old World species of Lotus, subgenus Edentolotus, sections Krokeria, Xantholotus, and Erythrolotus, a cladistic analysis was performed using 31 morphological characters. To test the phylogenetic relationships among species of Lotus-Edentolotus and Dorycnium, Pedrosia, and Tetragonolobus, these taxa were included as part of the ingroup. The polarity of the characters was based on the outgroup comparison method, using Anthyllis as one outgroup and Tripodion as another. The analysis with Anthyllis as outgroup yielded eight equally parsimonious trees (with all characters equally weighted), each with 62 steps, a consistency index of 0.53, and a retention index of 0.75. All trees (including the strict consensus tree from the eight initial trees) showed that genus Lotus, subgenus Edentolotus, and sections Xantholotus and Erythrolotus are polyphyletic, with only section Krokeria appearing as monophyletic. On the other hand, the groups of species Lotus angustissimus, Lotus corniculatus, Lotus creticus, and Lotus peregrinus are monophyletic. Identical results were derived from the data matrix using Tripodion as the outgroup. Results are compared with previous cytogenetic and biochemical evidence.Key words: cladistic analysis, Fabaceae, Loteae, Lotus, Old World species, phylogeny.


2011 ◽  
Vol 279 (1731) ◽  
pp. 1093-1099 ◽  
Author(s):  
Maria Heikkilä ◽  
Lauri Kaila ◽  
Marko Mutanen ◽  
Carlos Peña ◽  
Niklas Wahlberg

Although the taxonomy of the ca 18 000 species of butterflies and skippers is well known, the family-level relationships are still debated. Here, we present, to our knowledge, the most comprehensive phylogenetic analysis of the superfamilies Papilionoidea, Hesperioidea and Hedyloidea to date based on morphological and molecular data. We reconstructed their phylogenetic relationships using parsimony and Bayesian approaches. We estimated times and rates of diversification along lineages in order to reconstruct their evolutionary history. Our results suggest that the butterflies, as traditionally understood, are paraphyletic, with Papilionidae being the sister-group to Hesperioidea, Hedyloidea and all other butterflies. Hence, the families in the current three superfamilies should be placed in a single superfamily Papilionoidea. In addition, we find that Hedylidae is sister to Hesperiidae, and this novel relationship is supported by two morphological characters. The families diverged in the Early Cretaceous but diversified after the Cretaceous–Palaeogene event. The diversification of butterflies is characterized by a slow speciation rate in the lineage leading to Baronia brevicornis , a period of stasis by the skippers after divergence and a burst of diversification in the lineages leading to Nymphalidae, Riodinidae and Lycaenidae.


Zootaxa ◽  
2007 ◽  
Vol 1535 (1) ◽  
pp. 1-92 ◽  
Author(s):  
DALTON DE SOUZA AMORIM ◽  
EIRIK RINDAL

A phylogenetic analysis of the Mycetophiliformia (= Sciaroidea) was performed to determine the relationships among its families and to place the following genera of uncertain position in the system: Heterotricha, Ohakunea, Colonomyia, Freemanomyia, Rhynchoheterotricha, Chiletricha, Afrotricha, Anisotricha, Kenyatricha, Nepaletricha, Sciarosoma, Sciaropota, Insulatricha, Cabamofa, Rogambara, and Starkomyia. Eratomyia n. gen. is described based on a new species from Ecuador. Colonomyia brasiliana sp.n. and Colonomyia freemani sp.n. are described respectively from southern Brazil and Chile. The male of Cabamofa mira Jaschhof is described for the first time. A total of 64 terminal taxa and 137 transformation series (with 202 characters) were included in the data matrix, with a number of new features from thoracic morphology. Willi Hennig’s 1973 system for the higher Bibionomorpha was adopted using the name Mycetophiliformia for the Sciaroidea. The Mycetophiliformia are monophyletic. The family Cecidomyiidae appears as the sister group of the remaining Mycetophiliformia, followed by the Sciaridae. In the preferred topology, the Rangomaramidae appear as the group sister of a clade consisting of (Ditomyiidae + Bolitophilidae + Diadocidiidae + Keroplatidae) and of (Lygistorrhinidae + Mycetophilidae). The topology within the Rangomaramidae is (Chiletrichinae subfam. n. (Heterotrichinae subfam. n. ((Rangomaraminae + Ohakuneinae subfam. n.))). The Chiletrichinae include the genera Kenyatricha, Rhynchoheterotricha, Insulatricha, Chiletricha, and Eratomyia n. gen. Heterotrichinae and Rangomaraminae are monotypic. The subfamily Ohakuneinae includes Ohakunea, Colonomyia, Cabamofa, and Rogambara. The positions of Freemanomyia, Loicia, Taxicnemis, Sciaropota, Starkomyia, Anisotricha, Nepaletricha, and Sciarosoma are considered. Afrotricha might belong to the Sciaridae. The similarities used by many authors to gather the Sciaridae and Mycetophilidae in a clade are shown to be a combination of plesiomorphies and homoplasies.


Zootaxa ◽  
2013 ◽  
Vol 3611 (1) ◽  
pp. 1-69
Author(s):  
ANDRE V BOCHKOV ◽  
BARRY M OCONNOR ◽  
PATRICK GROOTAERT

The family Listropsoralgidae Fain, 1965 (Acariformes: Sarcoptoidea) is represented by the permanent skin ectoparasites associated with the South American and Australian marsupials (12 species) and the South American rodents of the family Echimyidae (1 species). The phylogenetic relationships of these mites (12 ingroup and 2 outgroup species) are reconstructed on the basis of the maximum parsimony (MP) and Bayesian analyses (BA) of 76 morphological characters. MP analysis confirmed monophyly of the listropsoralgid genera, the strict consensus of 18 trees generated by MP has the following pattern: Petauralges (Listropsoralgoides, Didelphialges, Listropsoralges) with poor resolution among species of the genus Listropsoralges. The same tree was generated by BA. Both successive and implied weighting strategies resulted in 7 MP trees: Petauralges (Listropsoralgoides (Didelphialges (Listropsoralges))). The relationships between species of the genus Listropsoralges received the poorest resolution: L. caenolestes (L. monodelphis, L. vossi, L. faini, L. brevisetosa (L. thylamys (L. marmosa–L. caluromys))). The host-parasite relationships of listropsoralgids are briefly discussed. The family Listropsoralgidae is taxonomically revised and to date includes 13 species in 4 genera. Six species and one genus are described as new: Listropsoralges brevisetosus sp. n. from Marmosa murina (Didelphimorphia: Didelphidae) from Peru, Listropsoralges similis sp. n. from Caluromys derbianus (Didelphidae) from Panama, Listropsoralges thylamys sp. n. from Thylamys venustus (Didelphidae) from Bolivia, Listropsoralges vossi sp. n. from Monodelphis domestica (Didelphidae) from Brazil, Listropsoralges caenolestes sp. n. from Caenolestes fuliginosus (Paucituberculata: Caenolestidae) from Ecuador, and Didelphialges metachirus gen. n., sp. n. from Metachirus nudicaudatus (Didelphidae) from Peru. The female of Listropsoralges faini Bochkov and Wauthy, 2009 is described for the first time.


2020 ◽  
Vol 96 (2) ◽  
pp. 455-498
Author(s):  
Kai Horst George

Uncovering the systematics of CopepodaHarpacticoida, the second-most abundant component of the meiobenthos after Nematoda, is of major importance for any further research dedicated especially to ecological and biogeographical approaches. Based on the evolution of the podogennontan first swimming leg, a new phylogenetic concept of the Ancorabolidae Sars and Cletodidae T. Scott sensu Por (Copepoda, Harpacticoida) is presented, using morphological characteristics. It confirms the polyphyletic status of the Ancorabolidae and its subfamily Ancorabolinae Sars and the paraphyletic status of the subfamily Laophontodinae Lang. Moreover, it clarifies the phylogenetic relationships of the so far assigned members of the family. An exhaustive phylogenetic analysis was undertaken using 150 morphological characters, resulting in the establishment of a now well-justified monophylum Ancorabolidae. In that context, the Ancorabolus-lineage sensu Conroy-Dalton and Huys is elevated to sub-family rank. Furthermore, the membership of Ancorabolina George in a rearranged monophylum Laophontodinae is confirmed. Conversely, the Ceratonotus-group sensu Conroy-Dalton is transferred from the hitherto Ancorabolinae to the Cletodidae. Within these, the Ceratonotus-group and its hypothesised sister-group Cletodes Brady are combined to form a monophyletic subfamily Cletodinae T. Scott, subfam. nov. Consequently, it was necessary to restructure the Ancorabolidae, Ancorabolinae and Laophontodinae and extend the Cletodidae to include the displacement and exclusion of certain taxa. Moreover, comparison of the Ancorabolidae, Cletodidae, Laophontoidea and other Podogennonta shows that the Ancorabolidae and Cletodidae form sister-groups in a monophylum Cletodoidea Bowman and Abele, which similarly has a sister-group-relationship with the Laophontoidea T. Scott. According to the present study, both taxa constitute a derived monophylum within the Podogennonta Lang.


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