A revision of the Neogene Cancellariid Gastropods of the Paratethys Sea

Zootaxa ◽  
2012 ◽  
Vol 3472 (1) ◽  
pp. 1
Author(s):  
MATHIAS HARZHAUSER ◽  
BERNARD LANDAU

We present the first synoptic revision of the cancellariid gastropods of the Miocene Paratethys Sea. This huge epicontiental sea experienced outstanding phases of invasions and endemic evolution, which resulted in a total diversity of at least 53 cancellariid species. The maximum diversity of 43 species was established during the early Middle Miocene (Langhian), corresponding to the mid-Miocene Climatic Optimum. This speciation and diversification event is suspected to be potentially still traceable in molecular clock analysis and should be considered in future investigations. The turn-over rate at species level was considerable, resulting in short species longevity. Most species were already extinct by Pliocene times and only a single species seems to have survived until the Early Pleistocene. None of these Miocene Paratethyan cancellariid species survive today in modern circum–Mediterranean assemblages. Extant species referred to the Miocene Admetinae genus Cancellicula are clearly not congeneric and have to be placed in a separate genus.Steiningeriella nov. gen. is described as new genus and Ovilia breitenbergerorum nov. sp. as new species. Petitina nov. nom. is introduced as replacement name for the preoccupied Inermia. New combinations are: Bonellitia hoernesi (Kittl, 1887) nov. comb., Pseudobabylonella nysti (Hörnes, 1854) nov. comb., Calcarata vindobonensis (Hilber, 1892) nov. comb., Contortia callosa (Hörnes, 1854) nov. comb., Contortia fenestrata (Eichwald, 1830) nov. comb., Contortia saccoi Hoernes & Auinger, 1890 nov. comb., Contortia tortoniana (Sacco, 1894) nov. comb., Merica crenata (Hörnes, 1856) nov. comb., Merica succineiformis (Boettger, 1906) nov. comb., Ovilia excassidea (Sacco, 1894) nov. comb., Petitina inermis (Pusch, 1837) nov. comb., Petitina angulata (Sieber, 1936) nov. comb., Perplicaria mioquadrata (Sacco, 1894) nov. comb., Scalptia dertocosticillata (Sacco, 1894) nov. comb., Scalptia dertoparva (Sacco, 1894) nov. comb., Scalptia polonica (Pusch, 1837) nov. comb., Scalptia michelinii (Bellardi, 1841) nov. comb., Scalptia neugeboreni (Hörnes, 1856) nov. comb., Scalptia scrobiculata (Hörnes, 1854) nov. comb., Solatia exwestiana (Sacco, 1894) nov. comb., Steiningeriella hebertiana (Hörnes, 1856) nov. comb. and Trigonostoma exampullaceum (Sacco, 1894) nov. comb.

2017 ◽  
Vol 49 (6) ◽  
pp. 673-691 ◽  
Author(s):  
Robert LÜCKING ◽  
Bibiana MONCADA ◽  
Clifford W. SMITH

AbstractWe assessed the taxonomy and phylogenetic relationships of Hawaiian species of the neotropical genus Lobariella. A single species was previously reported from the archipelago, the widespread neotropical L. crenulata. We targeted three loci of the mitochondrial and nuclear ribosomal rDNA gene cistron (mtSSU, nuLSU, ITS) and also performed a molecular clock analysis. Our results show that L. crenulata s. str. is seemingly present in the archipelago based on older herbarium collections. However, Hawaiian Lobariella includes three additional, presumably endemic, species unrelated to L. crenulata and new to science: L. flynniana Lücking, Moncada & C. W. Sm., with richly branched marginal phyllidia giving the thallus a fruticose appearance; L. robusta Lücking, Moncada & C. W. Sm., with a rather thick thallus and abundant, large, laminal phyllidia; and L. sandwicensis Lücking, Moncada & C. W. Sm., with a delicate thallus producing apothecia. Lobariella flynniana represents a novel morphotype within the genus, thus far known only from Hawaii. All three species are very closely related, forming a well-supported, monophyletic clade in spite of their morphological differences, suggesting local micro-radiation. Molecular clock analysis indicates that this clade colonized the islands between 1–8 mya and diverged between 0–2 mya. We interpret recent colonization as one of the main reasons why this clade has not diversified further.


Science ◽  
2021 ◽  
pp. eabh2644 ◽  
Author(s):  
Nuno R. Faria ◽  
Thomas A. Mellan ◽  
Charles Whittaker ◽  
Ingra M. Claro ◽  
Darlan da S. Candido ◽  
...  

Cases of SARS-CoV-2 infection in Manaus, Brazil, resurged in late 2020, despite previously high levels of infection. Genome sequencing of viruses sampled in Manaus between November 2020 and January 2021 revealed the emergence and circulation of a novel SARS-CoV-2 variant of concern. Lineage P.1, acquired 17 mutations, including a trio in the spike protein (K417T, E484K and N501Y) associated with increased binding to the human ACE2 receptor. Molecular clock analysis shows that P.1 emergence occurred around mid-November 2020 and was preceded by a period of faster molecular evolution. Using a two-category dynamical model that integrates genomic and mortality data, we estimate that P.1 may be 1.7–2.4-fold more transmissible, and that previous (non-P.1) infection provides 54–79% of the protection against infection with P.1 that it provides against non-P.1 lineages. Enhanced global genomic surveillance of variants of concern, which may exhibit increased transmissibility and/or immune evasion, is critical to accelerate pandemic responsiveness.


2009 ◽  
Vol 83 (2) ◽  
pp. 238-262 ◽  
Author(s):  
Richard C. Hulbert ◽  
Steven C. Wallace ◽  
Walter E. Klippel ◽  
Paul W. Parmalee

The previously poorly known “Tapiravus” polkensis Olsen, 1960 (Mammalia, Perissodactyla, Tapiridae) is now known from abundant, well preserved specimens from both the type area in central Florida and from the Gray Fossil Site (GFS) in eastern Tennessee. The latter has produced over 75 individuals, the greatest number of tapirids from a single fossil site, including many articulated skeletons. Almost all linear measurements taken on skulls, mandibles, and cheek teeth from GFS have coefficients of variation less than 10 (most between 3 and 7), indicating the presence of a single species. However, the sample reveals considerable intraspecific variation for a few key morphologic features, including development of the sagittal crest, outline shape of the nasals, and number and relative strength of lingual cusps on the P1. The Florida sample of T. polkensis is more limited, but has the same state as the GFS sample for all preserved characters of systematic significance, and while the Florida teeth are on average smaller (especially narrower lower cheek teeth), they fall either within or just below the observed range of the Gray Fossil Site population. The new material supports a reassignment of “Tapiravus” polkensis to the genus Tapirus, and demonstrates that the geologic age of the species is significantly younger than previously thought, Hemphillian rather than Barstovian. Tapirus polkensis is the smallest known North American Tapirus, and smaller than any of the extant species in the genus, with an estimated average mass of 125 kg.


2020 ◽  
Author(s):  
M V Westbury ◽  
Diana Le Duc ◽  
David A. Duchêne ◽  
Arunkumar Krishnan ◽  
Stefan Prost ◽  
...  

AbstractDuring the Miocene, Hyaenidae was a highly diverse family of Carnivora that has since been severely reduced to four extant genera, each of which contains only a single species. These species include the bone-cracking spotted, striped, and brown hyenas, and the specialised insectivorous aardwolf. Previous genome studies have analysed the evolutionary histories of the spotted and brown hyenas, but little is known about the remaining two species. Moreover, the genomic underpinnings of scavenging and insectivory, defining traits of the extant species, remain elusive. To tackle these questions, we generated an aardwolf genome and analysed it together with those from the other three species. We provide new insights into the evolutionary relationships between the species, the genomic underpinnings of their scavenging and insectivorous lifestyles, and their respective genetic diversities and demographic histories. High levels of phylogenetic discordance within the family suggest gene flow between the aardwolf lineage and the ancestral brown/striped hyena lineage. Genes related to immunity and digestion in the bone-cracking hyenas and craniofacial development in the aardwolf showed the strongest signals of selection in their respective lineages, suggesting putative key adaptations to carrion or termite feeding. We also found a family-wide expansion in olfactory receptor genes suggesting that an acute sense of smell was a key early adaptation for the Hyaenidae family. Finally, we report very low levels of genetic diversity within the brown and striped hyenas despite no signs of inbreeding, which we putatively link to their similarly slow decline in Neover the last ∼2 million years. We found much higher levels of genetic diversity in both the spotted hyena and aardwolf and more stable population sizes through time. Taken together, these findings highlight how ecological specialisation can impact the evolutionary history, demographics, and adaptive genetic changes of a lineage.


PeerJ ◽  
2015 ◽  
Vol 3 ◽  
pp. e1301 ◽  
Author(s):  
Adiël A. Klompmaker ◽  
Roger W. Portell ◽  
Aaron T. Klier ◽  
Vanessa Prueter ◽  
Alyssa L. Tucker

Spider crabs (Majoidea) are well-known from modern oceans and are also common in the western part of the Atlantic Ocean. When spider crabs appeared in the Western Atlantic in deep time, and when they became diverse, hinges on their fossil record. By reviewing their fossil record, we show that (1) spider crabs first appeared in the Western Atlantic in the Late Cretaceous, (2) they became common since the Miocene, and (3) most species and genera are found in the Caribbean region from the Miocene onwards. Furthermore, taxonomic work on some modern and fossil Mithracidae, a family that might have originated in the Western Atlantic, was conducted. Specifically,Maguimithraxgen. nov. is erected to accommodate the extant speciesDamithrax spinosissimus, whileDamithraxcf.pleuracanthusis recognized for the first time from the fossil record (late Pliocene–early Pleistocene, Florida, USA). Furthermore, two new species are described from the lower Miocene coral-associated limestones of Jamaica (Mithrax arawakumsp. nov. andNemausa windsoraesp. nov.). Spurred by a recent revision of the subfamily, two known species from the same deposits are refigured and transferred to new genera:Mithrax donovanitoNemausa, andMithrax unguistoDamithrax. The diverse assemblage of decapods from these coral-associated limestones underlines the importance of reefs for the abundance and diversity of decapods in deep time. Finally, we quantitatively show that these crabs possess allometric growth in that length/width ratios drop as specimens grow, a factor that is not always taken into account while describing and comparing among taxa.


2020 ◽  
Vol 117 (18) ◽  
pp. 9981-9990 ◽  
Author(s):  
Viviane M. Andrade ◽  
Carla Mavian ◽  
Dunja Babic ◽  
Thaissa Cordeiro ◽  
Mark Sharkey ◽  
...  

HIV-1 persists in cellular reservoirs that can reignite viremia if antiretroviral therapy (ART) is interrupted. Therefore, insight into the nature of those reservoirs may be revealed from the composition of recrudescing viremia following treatment cessation. A minor population of macrophage-tropic (M-tropic) viruses was identified in a library of recombinant viruses constructed with individual envelope genes that were obtained from plasma of six individuals undergoing analytic treatment interruption (ATI). M-tropic viruses could also be enriched from post-ATI plasma using macrophage-specific (CD14) but not CD4+ T cell-specific (CD3) antibodies, suggesting that M-tropic viruses had a macrophage origin. Molecular clock analysis indicated that the establishment of M-tropic HIV-1 variants predated ATI. Collectively, these data suggest that macrophages are a viral reservoir in HIV-1–infected individuals on effective ART and that M-tropic variants can appear in rebounding viremia when treatment is interrupted. These findings have implications for the design of curative strategies for HIV-1.


2005 ◽  
Vol 79 (3) ◽  
pp. 1595-1604 ◽  
Author(s):  
Leen Vijgen ◽  
Els Keyaerts ◽  
Elien Moës ◽  
Inge Thoelen ◽  
Elke Wollants ◽  
...  

ABSTRACT Coronaviruses are enveloped, positive-stranded RNA viruses with a genome of approximately 30 kb. Based on genetic similarities, coronaviruses are classified into three groups. Two group 2 coronaviruses, human coronavirus OC43 (HCoV-OC43) and bovine coronavirus (BCoV), show remarkable antigenic and genetic similarities. In this study, we report the first complete genome sequence (30,738 nucleotides) of the prototype HCoV-OC43 strain (ATCC VR759). Complete genome and open reading frame (ORF) analyses were performed in comparison to the BCoV genome. In the region between the spike and membrane protein genes, a 290-nucleotide deletion is present, corresponding to the absence of BCoV ORFs ns4.9 and ns4.8. Nucleotide and amino acid similarity percentages were determined for the major HCoV-OC43 ORFs and for those of other group 2 coronaviruses. The highest degree of similarity is demonstrated between HCoV-OC43 and BCoV in all ORFs with the exception of the E gene. Molecular clock analysis of the spike gene sequences of BCoV and HCoV-OC43 suggests a relatively recent zoonotic transmission event and dates their most recent common ancestor to around 1890. An evolutionary rate in the order of 4 × 10−4 nucleotide changes per site per year was estimated. This is the first animal-human zoonotic pair of coronaviruses that can be analyzed in order to gain insights into the processes of adaptation of a nonhuman coronavirus to a human host, which is important for understanding the interspecies transmission events that led to the origin of the severe acute respiratory syndrome outbreak.


Paleobiology ◽  
2001 ◽  
Vol 27 (1) ◽  
pp. 104-125 ◽  
Author(s):  
Colomban de Vargas ◽  
Sabrina Renaud ◽  
Heinz Hilbrecht ◽  
Jan Pawlowski

Globorotalia truncatulinoides is an extant species of planktic foraminiferans commonly used for stratigraphic and paleoenvironmental analyses. It originated ∼2.8 m.y. ago in subtropical areas of the South Pacific, spread to all subtropical and temperate regions of the world ocean, and expanded its range to southern subantarctic waters between 500 and 200 Ka. The wide geographic distribution of G. truncatulinoides is associated with a latitudinal morphological variability considered as an ecophenotypic variation within a single species. Here, we present the first molecular, morphological, and ecological evidence that G. truncatulinoides corresponds to a complex of four genetic species adapted to particular hydrographic conditions. The different species are separated by significant genetic distances in several ribosomal genes (SSU, ITS-1, 5.8S, ITS-2). Species 1 and species 2 characterize subtropical waters, species 3 is abundant exclusively in the Subantarctic Convergence, while species 4 inhabits subantarctic waters. By using an absolute molecular clock, we deduce the time of divergence between the subtropical and frontal/subantarctic species at ∼300 Ka, which is in agreement with stratigraphic data and suggests an adaptive radiation of the species allowing it to colonize the nutrient-rich and cold subantarctic waters. This genetic dichotomy is associated with a morphological differentiation identified using outline analysis. Species of the same regions are more similar in test shape but can be distinguished by coiling direction. The evolutionary patterns recognized here by combining DNA and morphological analyses from plankton-tow specimens mirror and allow a new interpretation of the data available from Recent sediments. They highlight the importance of adaptation and heterochronic processes, leading to cryptic speciation, in planktic foraminifera.


2003 ◽  
Vol 174 (2) ◽  
pp. 187-193 ◽  
Author(s):  
Andossa Likius ◽  
Michel Brunet ◽  
Denis Geraads ◽  
Patrick Vignaud

Abstract A fragment of mandible and two metapodials complete unearthed from the fossiliferous aera of Kossom Bougoudi (KB3 and KB26), northern Chad are described. A comparative study allows to assign these specimens to Paracamelus gigas. The evolutionnary degree is compatible with an age around the Mio-Pliocene boundary (ca 5 Ma). Then, the Chadian remains are the oldest adequately dated record of this family in Africa. They are contemporaneous with the oldest known evidence of the genus Paracamelus from the late Miocene of Asia and Europe. Introduction. – During several field seasons in northern Chad, the “Mission Paléoanthropologique Franco-Tchadienne” (M. P. F. T) discovered new sites in the Kossom Bougoudi (KB) fossiliferous area, west of australopithecine sites [Brunet et al., 1995, 1997; Brunet and M.P.F.T, 2000]. These sites yielded a rich vertebrate fauna (fish, reptiles, birds and mammals), and have been biochronologically dated at around 5 Ma old, close to the Mio-Pliocene boundary [Brunet and M. P. F.T, 2000]. Among the mammal fauna, some remains of Camelidae provide the earliest evidence of this group in Africa, which was previously thought to be younger than 4 Ma, at Laetoli [Harris, 1987] and Koobi Fora [Harris, 1991]. Specimens from sites KB3 and KB26 are described here. Description Material : KB3.97.316 : right mandible fragment with p3, p4-m1 roots and m2-m3 teeth; KB3.99.03 : right metatarsus; KB26.97.03 : right metatarsus The mandible is rather robust with a high horizontal ramus. The mental foramen is located below m1. The p3 alveolus and p4 roots attest elongated premolars. The lingual face of the molars is flat. The third lobe of m3 is less labially shifted than in the living camels. There is no cement, nor cingulum. The metatarsals are long and robust (tab. III), and show a deep groove on the proximal anterior and posterior faces. The distal condyles are divergent and separated by a deep interarticular notch. They are symmetrical and of the same size differences, in contrast with the extant species where the external condyle is more slender than the internal one. Comparison. – The mandible (KB3.97.316) differs from the Camelus species mandible by having (1) a robust and deeper horizontal ramus, (2) a well developed p3, (3) a third lobe of m3 less labially shifted (4) Chadian metatarsals are morphologically different from those the living camels and being extremely long (tab. II). All characters of the Chadian specimens are congruent with Zdansky’s [1926] and Teilhard and Trassaert’s [1937] descriptions of genus Paracamelus. The KB horizontal ramus is deeper than that of P. alutensis (tab. I) from the early Pleistocene of Oltet Valley, Romania [Stefanescu, 1910]. The premolar row is longer. Unfortunately, a detailed comparison with P. aguirrei from the late Miocene (MN13) of Venta del Moro and Librilla, Spain is impossible because this species was defined on skeletal elements (upper molars, calcaneum, phalanxes) not yet recovered from Chad. However, the estimated alveolar length of p3 (20 mm) is similar to those of P. aguirrei (18,8 – 21,6 mm according to Morales [1984]). Lengths of KB tooth row (tab. I) and metatarsals (tab. II) fit into the range of variation recorded by Zdansky [1926] and by Teilhard and Trassaert [1937] for P. gigas from the late Miocene of China. The Chadian material cannot be assigned to the species P. alexejevi from the Pliocene (MN15) of Ukraine, because this species is smaller than P. aguirrei and P. gigas [Morales, 1984]. In conclusion, specimens from Chad do not display any important difference with Chinese species P. gigas and can tentatively be referred to this species. Biochronology and paleobiogeography. – The earliest known Old World camel correspond to P. aguirrei from the late Miocene (MN13) of Venta del Moro and Librilla in Spain [Morales et al., 1980; Made and Morales, 1999]. After Made and Morales [1999], this species is probably the ancestor of P. alexejevi from of Odessa Catacombs (MN15), Ukraine. In Europe, the chronological range of P. alutensis covers the Plio-Pleistocene. This species is present in the lower Pleistocene of Oltet Valley, Romania [Stefanescu, 1910] and in the early and Middle Pliocene (MN16) of Russia [Baigusheva, 1971]. It is also present in the late Pliocene of Sarikol Tepe, Turkey [Kostopoulos and Sen, 1999]. In China, the earliest record of P. gigas is about 5.5 Ma [Flynn, 1997; Made and Morales, 1999]. In conclusion the chronological range of Paracamelus is from the late Miocene to the Pleistocene. However, the Chadian specimens size is close to P. gigas (first occurrence in China around 5.5 Ma) and P. aguirrei from late Miocene (MN13) of Europe. The occurrence of Paracamelus at KB and its absence from the younger Chadian sites (3-4 Ma) of Koro-Toro and Kollé [Brunet et al., 1995; 1996] as well as in the Plio-Pleistocene localities of Africa, are congruent with an age close to the Mio-Pliocene boundary for the sites of KB. This interpretation is confirmed by the associated fauna, that indicates ca 5 Ma old for the whole of KB fossiliferous area [Brunet and M.P.F.T, 2000]. The age of the Chadian Paracamelus is close to the Mio-Pliocene boundary, slightly younger than specimens from late Miocene of China [Zdansky, 1926; Flynn, 1997], Spain [Morales et al., 1980] and Turkey [Made et al., 2002]. This demonstrates that the group had a wider distribution than previously thought. It indicates that the Camelidae reach a widespread distribution soon after their arrival from northern America [Webb, 1965; Pickford et al., 1993]. Conclusion. – The Chadian material displays distinctive features which allows to refer it to Paracamelus gigas. This taxon, poorly documented in Eurasia, has not been previously recognised in Africa. It will contribute to deciphering the phylogenetic relationships between various species of Paracamelus and the extant Camelus.


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