scholarly journals Monitoring of water spectral patterns of lactobacilli development as a tool for rapid selection of probiotic candidates

2017 ◽  
Vol 25 (6) ◽  
pp. 423-431 ◽  
Author(s):  
Aleksandar Slavchev ◽  
Zoltan Kovacs ◽  
Haruki Koshiba ◽  
Gyorgy Bazar ◽  
Bernhard Pollner ◽  
...  
Keyword(s):  
Spectral Data ◽  
Near Infrared ◽  
Wavelength Region ◽  
Principal Component ◽  
Lactobacillus Bulgaricus ◽  
Probiotic Bacteria ◽  
Least Squares Regression ◽  
Linear Discriminant ◽  
Spectral Patterns

Nowadays a quick and inexpensive method, which allows rapid, in vivo comprehensive probiotic bacteria identification, is needed. To elucidate a new concept to evaluate probiotic bacteria, near infrared spectroscopy with aquaphotomics were applied to monitor the growth of eight Lactobacillus bulgaricus and one Lactobacillus gasseri bacteria strains. Their resistance to low pH (1.8) in the presence of pepsin and bile were measured and further used as reference data for analysis of the simultaneously acquired spectral data. The acquired spectral data in the region of 1100–1300 nm were subjected to various methods for multivariate data analyses—principal component analysis, linear discriminant analysis, soft independent modeling of class analogy, and partial least squares regression. The results showed high accuracy of bacteria strains classification according to their resistance and the potential of the tested wavelength region for rapid selection and prediction of some basic phenotypic characteristics of probiotic candidates. Results of the current study also revealed different suitability of each growth stage when using near infrared spectra for the classification of bacteria strains.

scholarly journals Feasibility Study of the Use of Handheld NIR Spectrometer for Simultaneous Authentication and Quantification of Quality Parameters in Intact Pineapple Fruits

2019 ◽  
Vol 2019 ◽  
pp. 1-9 ◽  
Author(s):  
Charles L. Y. Amuah ◽  
Ernest Teye ◽  
Francis Padi Lamptey ◽  
Kwasi Nyandey ◽  
Jerry Opoku-Ansah ◽  
...  
Keyword(s):  
Near Infrared ◽  
Nearest Neighbor ◽  
Multivariate Calibration ◽  
Principal Component ◽  
Quality Parameters ◽  
Soluble Solids ◽  
Least Squares Regression ◽  
Total Soluble Solids ◽  
Linear Discriminant ◽  
Identification Rate

The potential of predicting maturity using total soluble solids (TSS) and identifying organic from inorganic pineapple fruits based on near-infrared (NIR) spectra fingerprints would be beneficial to farmers and consumers alike. In this study, a portable NIR spectrometer and chemometric techniques were combined to simultaneously identify organically produced pineapple fruits from conventionally produced ones (thus organic and inorganic) and also predict total soluble solids. A total of 90 intact pineapple fruits were scanned with the NIR spectrometer while a digital refractometer was used to measure TSS from extracted pineapple juice. After attempting several preprocessing techniques, multivariate calibration models were built using principal component analysis (PCA), K-nearest neighbor (KNN), and linear discriminant analysis (LDA) to identify the classes (organic and conventional pineapple fruits) while partial least squares regression (PLSR) method was used to determine TSS of the fruits. Among the identification techniques, the MSC-PCA-LDA model accurately identified organic from conventionally produced fruits at 100% identification rate. For quantification of TSS, the MSC-PLSR model gave Rp = 0.851 and RMSEC = 0.950 °Brix, and Rc = 0.854 and RMSEP = 0.842 °Brix at 5 principal components in the calibration set and prediction set, respectively. The results generally indicated that portable NIR spectrometer coupled with the appropriate chemometric tools could be employed for rapid nondestructive examination of pineapple quality and also to detect pineapple fraud due to mislabeling of conventionally produced fruits as organic ones. This would be helpful to farmers, consumers, and quality control officers.

Near infrared spectroscopy and aquaphotomics evaluation of the efficiency of solar dehydration processes in pineapple slices

2021 ◽  
pp. 096703352110543
Author(s):  
Tiziana MP Cattaneo ◽  
Maurizio Cutini ◽  
Alessandro Cammerata ◽  
Annamaria Stellari ◽  
Laura Marinoni ◽  
...  
Keyword(s):  
Near Infrared ◽  
Wavelength Region ◽  
Statistical Processing ◽  
Principal Component ◽  
Titratable Acidity ◽  
Ventilation Rate ◽  
Spectra Analysis ◽  
Linear Discriminant ◽  
Water Matrix ◽  
Dehydration Processes

Parallel transformation tests on pineapple slices using two micro drying plants (M1 and M2) operating with solar energy were carried out. Method M1 consisted of an active fan at the top, whose ventilation rate depended on the internal temperature. Method M2 had a continuously working fan at the bottom. The dehydration performance of these two micro-plants was compared by collecting spectra from pineapple slices in reflectance mode (900–1600 nm) at three different times: (0) process start, (1) during the process [48 h] and (2) process end [56 h]. Simultaneously, dry matter, titratable acidity (SH°), pH and aw (water activity) were measured. For these parameters, significant differences ( p < 0.05) were detected between the fresh (t = 0) and the dried product (t = 56). Near infrared (NIR) spectra analysis was carried out according to previously published methods. Spectral data in the wavelength region from 1300 to 1550 nm underwent statistical processing to perform aquaphotomics evaluation and chemometrics methods such as PCA (Principal Component Analysis) and LDA (Linear Discriminant Analysis). The Aquagrams highlighted differences among fresh, half-dried and dried slices where water molecules were highly organized between the water matrix coordinates C1 to C3 at t = 0 and C2 to C6 for the other evaluated times. The PCA could explain about 98% of the total variance in the PC1–PC3 scores plot. And the additional LDA classified the NIR spectra with an accuracy of 100, 98 and 83% for t = 0, t = 56-M1 and t = 56-M2, respectively. Such preliminary results suggest the applicability of Aquaphotomics and chemometrics for the continuous monitoring of fruit drying processes using an adequate NIR probe. Further experiments are already in progress.

scholarly journals A fast and low-cost approach to quality control of alcohol-based hand sanitizer using portable near infrared spectrometer and chemometrics

2021 ◽  
pp. 096703352098731
Author(s):  
Adenilton C da Silva ◽  
Lívia PD Ribeiro ◽  
Ruth MB Vidal ◽  
Wladiana O Matos ◽  
Gisele S Lopes
Keyword(s):  
Quality Control ◽  
Discriminant Analysis ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Partial Least Square ◽  
Least Square ◽  
Chemical Components ◽  
Linear Discriminant ◽  
Hand Sanitizer

The use of alcohol-based hand sanitizers is recommended as one of several strategies to minimize contamination and spread of the COVID-19 disease. Current reports suggest that the virucidal potential of ethanol occurs at concentrations close to 70%. Traditional methods of verifying the ethanol concentration in such products invite potential errors due to the viscosity of chemical components or may be prohibitively expensive to undertake in large demand. Near infrared (NIR) spectroscopy and chemometrics have already been used for the determination of ethanol in other matrices and present an alternative fast and reliable approach to quality control of alcohol-based hand sanitizers. In this study, a portable NIR spectrometer combined with classification chemometric tools, i.e., partial least square discriminant analysis (PLS–DA) and linear discriminant analysis with successive algorithm projection (SPA–LDA) were used to construct models to identify conforming and non-conforming commercial and laboratory synthesized hand sanitizer samples. Principal component analysis (PCA) was applied in an exploratory data study. Three principal components accounted for 99% of data variance and demonstrate clustering of conforming and non-conforming samples. The PLS–DA and SPA–LDA classification models presented 77 and 100% of accuracy in cross/internal validation respectively and 100% of accuracy in the classification of test samples. A total of 43% commercial samples evaluated using the PLS–DA and SPA–LDA presented ethanol content non-conforming for hand sanitizer gel. These results indicate that use of NIR spectroscopy and chemometrics is a promising strategy, yielding a method that is fast, portable, and reliable for discrimination of alcohol-based hand sanitizers with respect to conforming and non-conforming ethanol concentrations.

Estimation of soil organic matter using proximal and satellite sensors after a wildfire in Mediterranean Croatia

2021 ◽  
Author(s):  
Iva Hrelja ◽  
Ivana Šestak ◽  
Igor Bogunović
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Spectral Data ◽  
Near Infrared ◽  
Mean Squared Error ◽  
Nir Spectroscopy ◽  
Soil Samples ◽  
Least Squares Regression ◽  
Macro Scale ◽  
Sentinel 2

&lt;p&gt;Spectral data obtained from optical spaceborne sensors are being recognized as a valuable source of data that show promising results in assessing soil properties on medium and macro scale. Combining this technique with laboratory Visible-Near Infrared (VIS-NIR) spectroscopy methods can be an effective approach to perform robust research on plot scale to determine wildfire impact on soil organic matter (SOM) immediately after the fire. Therefore, the objective of this study was to assess the ability of Sentinel-2 superspectral data in estimating post-fire SOM content and comparison with the results acquired with laboratory VIS-NIR spectroscopy.&lt;/p&gt;&lt;p&gt;The study is performed in Mediterranean Croatia (44&amp;#176; 05&amp;#8217; N; 15&amp;#176; 22&amp;#8217; E; 72 m a.s.l.), on approximately 15 ha of fire affected mixed &lt;em&gt;Quercus ssp.&lt;/em&gt; and &lt;em&gt;Juniperus ssp.&lt;/em&gt; forest on Cambisols. A total of 80 soil samples (0-5 cm depth) were collected and geolocated on August 22&lt;sup&gt;nd&lt;/sup&gt; 2019, two days after a medium to high severity wildfire. The samples were taken to the laboratory where soil organic carbon (SOC) content was determined via dry combustion method with a CHNS analyzer. SOM was subsequently calculated by using a conversion factor of 1.724. Laboratory soil spectral measurements were carried out using a portable spectroradiometer (350-1050 nm) on all collected soil samples. Two Sentinel-2 images were downloaded from ESAs Scientific Open Access Hub according to the closest dates of field sampling, namely August 31&lt;sup&gt;st&lt;/sup&gt; and September 5&lt;sup&gt;th &lt;/sup&gt;2019, each containing eight VIS-NIR and two SWIR (Short-Wave Infrared) bands which were extracted from bare soil pixels using SNAP software. Partial least squares regression (PLSR) model based on the pre-processed spectral data was used for SOM estimation on both datasets. Spectral reflectance data were used as predictors and SOM content was used as a response variable. The accuracy of the models was determined via Root Mean Squared Error of Prediction (RMSE&lt;sub&gt;p&lt;/sub&gt;) and Ratio of Performance to Deviation (RPD) after full cross-validation of the calibration datasets.&lt;/p&gt;&lt;p&gt;The average post-fire SOM content was 9.63%, ranging from 5.46% minimum to 23.89% maximum. Models obtained from both datasets showed low RMSE&lt;sub&gt;p &lt;/sub&gt;(Spectroscopy dataset RMSE&lt;sub&gt;p&lt;/sub&gt; = 1.91; Sentinel-2 dataset RMSE&lt;sub&gt;p&lt;/sub&gt; = 0.99). RPD values indicated very good predictions for both datasets (Spectrospcopy dataset RPD = 2.72; Sentinel-2 dataset RPD = 2.22). Laboratory spectroscopy method with higher spectral resolution provided more accurate results. Nonetheless, spaceborne method also showed promising results in the analysis and monitoring of SOM in post-burn period.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Keywords:&lt;/strong&gt; remote sensing, soil spectroscopy, wildfires, soil organic matter&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Acknowledgment: &lt;/strong&gt;This work was supported by the Croatian Science Foundation through the project &quot;Soil erosion and degradation in Croatia&quot; (UIP-2017-05-7834) (SEDCRO). Aleksandra Per&amp;#269;in is acknowledged for her cooperation during the laboratory work.&lt;/p&gt;

scholarly journals Separation of Cultivars of Soybeans by Chemometric Methods Using Near Infrared Spectroscopy

2018 ◽  
Vol 10 (4) ◽  
pp. 351
Author(s):  
João S. Panero ◽  
Henrique E. B. da Silva ◽  
Pedro S. Panero ◽  
Oscar J. Smiderle ◽  
Francisco S. Panero ◽  
...  
Keyword(s):  
Spectral Data ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Hierarchical Cluster ◽  
Relevant Information ◽  
Whole Grains ◽  
Signal Correction ◽  
Different Types ◽  
Linear Fit

Near Infrared (NIR) Spectroscopy technique combined with chemometrics methods were used to group and identify samples of different soy cultivars. Spectral data, collected in the range of 714 to 2500 nm (14000 to 4000 cm-1), were obtained from whole grains of four different soybean cultivars and were submitted to different types of pre-treatments. Chemometrics algorithms were applied to extract relevant information from the spectral data, to remove the anomalous samples and to group the samples. The best results were obtained considering the spectral range from 1900.6 to 2187.7 nm (5261.4 cm-1 to 4570.9 cm-1) and with spectral treatment using Multiplicative Signal Correction (MSC) + Baseline Correct (linear fit), what made it possible to the exploratory techniques Principal Component Analysis (PCA) and Hierarchical Cluster Analysis (HCA) to separate the cultivars. Thus, the results demonstrate that NIR spectroscopy allied with de chemometrics techniques can provide a rapid, nondestructive and reliable method to distinguish different cultivars of soybeans.

Application of visible and near-infrared spectroscopy for evaluation of ewes milk with different feeds

2019 ◽  
Vol 59 (6) ◽  
pp. 1190 ◽  
Author(s):  
A. Bahri ◽  
S. Nawar ◽  
H. Selmi ◽  
M. Amraoui ◽  
H. Rouissi ◽  
...  
Keyword(s):  
Principal Component Analysis ◽  
Infrared Spectroscopy ◽  
Random Forest ◽  
Near Infrared Spectroscopy ◽  
Partial Least Squares Regression ◽  
Near Infrared ◽  
Principal Component ◽  
Least Squares Regression ◽  
Random Forest Regression ◽  
Milk Samples

Rapid measurement optical techniques have the advantage over traditional methods of being faster and non-destructive. In this work visible and near-infrared spectroscopy (vis-NIRS) was used to investigate differences between measured values of key milk properties (e.g. fat, protein and lactose) in 30 samples of ewes milk according to three feed systems; faba beans, field peas and control diet. A mobile fibre-optic vis-NIR spectrophotometer (350–2500 nm) was used to collect reflectance spectra from milk samples. Principal component analysis was used to explore differences between milk samples according to the feed supplied, and a partial least-squares regression and random forest regression were adopted to develop calibration models for the prediction of milk properties. Results of the principal component analysis showed clear separation between the three groups of milk samples according to the diet of the ewes throughout the lactation period. Milk fat, protein and lactose were predicted with good accuracy by means of partial least-squares regression (R2 = 0.70–0.83 and ratio of prediction deviation, which is the ratio of standard deviation to root mean square error of prediction = 1.85–2.44). However, the best prediction results were obtained with random forest regression models (R2 = 0.86–0.90; ratio of prediction deviation = 2.73–3.26). The adoption of the vis-NIRS coupled with multivariate modelling tools can be recommended for exploring to differences between milk samples according to different feed systems, and to predict key milk properties, based particularly on the random forest regression modelling technique.

scholarly journals In vivo non-invasive near-infrared spectroscopy distinguishes normal, post-stroke, and botulinum toxin treated human muscles

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Antonio Currà ◽  
Riccardo Gasbarrone ◽  
Alessandra Cardillo ◽  
Francesco Fattapposta ◽  
Paolo Missori ◽  
...  
Keyword(s):  
Botulinum Toxin ◽  
Near Infrared ◽  
Comprehensive Evaluation ◽  
Botulinum Toxin Injection ◽  
Principal Component ◽  
Short Wave ◽  
Post Stroke ◽  
Non Invasive ◽  
Optimal Monitoring

AbstractIn post-stroke hemiparesis, neural impairment alters muscle control, causing abnormal movement and posture in the affected limbs. A decrease in voluntary use of the paretic arm and flexed posture during rest also induce secondary tissue transformation in the upper limb muscles. To obtain a specific, accurate, and reproducible marker of the current biological status of muscles, we collected visible (VIS) and short-wave Infrared (SWIR) reflectance spectra in vivo using a portable spectroradiometer (350–2500 nm), which provided the spectral fingerprints of the elbow flexors and extensors. We compared the spectra for the affected and unaffected sides in 23 patients with post-stroke hemiparesis (25–87 years, 8 women) and eight healthy controls (33–87 years, 5 women). In eight patients, spectra were collected before and after botulinum toxin injection. Spectra underwent off-line preprocessing, principal component analysis, and partial least-squares discriminant analysis. Spectral fingerprints discriminated the muscle (biceps vs. triceps), neurological condition (normal vs. affected vs. unaffected), and effect of botulinum toxin treatment (before vs. 30 to 40 days vs. 110 to 120 days after injection). VIS-SWIR spectroscopy proved valuable for non-invasive assessment of optical properties in muscles, enabled more comprehensive evaluation of hemiparetic muscles, and provided optimal monitoring of the effectiveness of medication.

scholarly journals Tracing the Geographical Origin of Durum Wheat by FT-NIR Spectroscopy

Foods ◽  
2019 ◽  
Vol 8 (10) ◽  
pp. 450 ◽  
Author(s):  
Annalisa De Girolamo ◽  
Marina Cortese ◽  
Salvatore Cervellieri ◽  
Vincenzo Lippolis ◽  
Michelangelo Pascale ◽  
...  
Keyword(s):  
Durum Wheat ◽  
Near Infrared ◽  
Southern Italy ◽  
Geographical Origin ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Classification Model ◽  
North Central ◽  
Linear Discriminant ◽  
The World

Fourier transform near infrared (FT-NIR) spectroscopy, in combination with principal component-linear discriminant analysis (PC-LDA), was used for tracing the geographical origin of durum wheat samples. The classification model PC-LDA was applied to discriminate durum wheat samples originating from Northern, Central, and Southern Italy (n = 181), and to differentiate Italian durum wheat samples from those cultivated in other countries across the world (n = 134). Developed models were validated on a separated set of wheat samples. Different pre-treatments of spectral data and different spectral regions were selected and compared in terms of overall discrimination (OD) rates obtained in validation. The LDA models were able to correctly discriminate durum Italian wheat samples according to their geographical origin (i.e., North, Central, and South) with OD rates of up of 96.7%. Better results were obtained when LDA models were applied to the discrimination of Italian durum wheat samples from those originating from other countries across the world, having OD rates of up to 100%. The excellent results obtained herein clearly indicate the potential of FT-NIR spectroscopy to be used for the discrimination of durum wheat samples according to their geographical origin.

Prediction of diet quality for sheep from faecal characteristics: comparison of near-infrared spectroscopy and conventional chemistry predictive models

2015 ◽  
Vol 55 (1) ◽  
pp. 1 ◽  
Author(s):  
D. G. Kneebone ◽  
G. McL. Dryden
Keyword(s):  
Infrared Spectroscopy ◽  
Near Infrared Spectroscopy ◽  
Near Infrared ◽  
Predictive Ability ◽  
Validation Dataset ◽  
Least Squares Regression ◽  
Prediction Equations ◽  
Faecal Excretion ◽  
Excretion Rates

This study evaluated the ability of equations developed from the analysis of faecal material by conventional chemistry (F.CHEM), and by near-infrared spectroscopy (F.NIRS), to predict intake and digestibility of forages fed with or without supplements. In vivo datasets were obtained using 30 sheep and 25 diets to provide 124 diet–faecal pairs, with each sheep fed four or five of the diets. The diets were five forages fed alone or with urea, molasses, cottonseed meal or sorghum grain supplements. Ninety-nine diet–faecal pairs were selected at random, but ensuring that all diets were represented and both the F.CHEM and F.NIRS prediction equations were developed from this dataset. The remaining 25 diet–faecal pairs were used as a validation dataset. Regressions for F.CHEM were developed by stepwise regression, and F.NIRS prediction equations were developed by partial least-squares regression. Prediction equations based solely on faecal analyte concentrations (F.CHEMc) had poor predictive ability, and models incorporating faecal constituent excretion rates (F.CHEMe) were the best at predicting feed constituent intakes. These models had slightly lower standard errors of prediction (SEP) for organic matter (OM) intake and digestible OM intake compared with the F.NIRS models that did not include faecal excretion rates. However, F.NIRS models had lower SEP for protein intake and OM digestibility. Good agreement between the F.CHEMe and F.NIRS methods was evident (according to the 95% limits-of-agreement test), and both predicted the reference values precisely and with small bias. Equations derived from a dataset that included representatives of all diets used in the experiment gave much better prediction of diet characteristics than those developed from a dataset constructed entirely at random. Equations for F.NIRS developed in this way successfully predicted the characteristics of diets that included forages fed alone and with the type of supplements used in tropical Australia.

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