Gastrointestinal and Microbial Responses to Sulfate-Supplemented Drinking Water in Mice

2003 ◽  
Vol 228 (4) ◽  
pp. 424-433 ◽  
Author(s):  
Bart Deplancke ◽  
Kai Finster ◽  
W Vallen Graham ◽  
Chad T. Collier ◽  
Joel E. Thurmond ◽  
...  
Keyword(s):  
Drinking Water ◽  
Denaturing Gradient Gel Electrophoresis ◽  
Molecular Ecology ◽  
Distal Colon ◽  
Goblet Cells ◽  
Gi Tract ◽  
Microbial Responses ◽  
Gradient Gel Electrophoresis ◽  
The Impact ◽  
Inorganic Sulfate

There is increasing evidence that hydrogen sulfide (H2S), produced by intestinal sulfate-reducing bacteria (SRB), may be involved in the etiopathogenesis of chronic diseases such as ulcerative colitis and colorectal cancer. The activity of SRB, and thus H2S production, is likely determined by the availability of sulfur-containing compounds in the intestine. However, little is known about the impact of dietary or inorganic sulfate on intestinal sulfate and SRB-derived H2S concentrations. In this study, the effects of short-term (7 day) and long-term (1 year) inorganic sulfate supplementation of the drinking water on gastrointestinal (GI) sulfate and H2S concentrations (and thus activity of resident SRBs), and the density of large intestinal sulfomucin-containing goblet cells, were examined in C3H/HeJBir mice. Additionally, a PCR-denaturing gradient gel electrophoresis (DGGE)-based molecular ecology technique was used to examine the impact of sulfate-amended drinking water on microbial community structure throughout the GI tract. Average H2S concentrations ranged from 0.1 m M (stomach) to 1 m M (cecum). A sulfate reduction assay demonstrated in situ production of H2S throughout the GI tract, confirming the presence of SRB. However, H2S generation and concentrations were greatest in the cecum and colon. Sulfate supplementation of drinking water did not significantly increase intestinal sulfate or H2S concentrations, suggesting that inorganic sulfate is not an important modulator of intestinal H2S concentrations, although it altered the bacterial profiles of the stomach and distal colon of 1-year-old mice. This change in colonic bacterial profiles may reflect a corresponding increase in the density of sulfomucin-containing goblet cells in sulfate-supplemented compared with control mice.

scholarly journals Impact of Intensive Land-Based Fish Culture in Qingdao, China, on the Bacterial Communities in Surrounding Marine Waters and Sediments

2011 ◽  
Vol 2011 ◽  
pp. 1-8 ◽  
Author(s):  
Qiufen Li ◽  
Yan Zhang ◽  
David Juck ◽  
Nathalie Fortin ◽  
Charles W. Greer
Keyword(s):  
Bacterial Communities ◽  
Gel Electrophoresis ◽  
Denaturing Gradient Gel Electrophoresis ◽  
Fish Culture ◽  
Fish Ponds ◽  
Marine Area ◽  
Gradient Gel Electrophoresis ◽  
Reducing Bacteria ◽  
The Impact ◽  
Nitrate Reducing Bacteria

The impact of intensive land-based fish culture in Qingdao, China, on the bacterial communities in surrounding marine environment was analyzed. Culture-based studies showed that the highest counts of heterotrophic, ammonium-oxidizing, nitrifying, and nitrate-reducing bacteria were found in fish ponds and the effluent channel, with lower counts in the adjacent marine area and the lowest counts in the samples taken from 500 m off the effluent channel. Denaturing gradient gel electrophoresis (DGGE) analysis was used to assess total bacterial diversity. Fewer bands were observed from the samples taken from near the effluent channel compared with more distant sediment samples, suggesting that excess nutrients from the aquaculture facility may be reducing the diversity of bacterial communities in nearby sediments. Phylogenetic analysis of the sequenced DGGE bands indicated that the bacteria community of fish-culture-associated environments was mainly composed of Flavobacteriaceae, gamma- and deltaproteobacteria, including generaGelidibacter, Psychroserpen, Lacinutrix,andCroceimarina.

Individual responses of mother sows to a probiotic Enterococcus faecium strain lead to different microbiota composition in their offspring

2013 ◽  
Vol 4 (4) ◽  
pp. 345-356 ◽  
Author(s):  
I.C. Starke ◽  
R. Pieper ◽  
K. Neumann ◽  
J. Zentek ◽  
W. Vahjen
Keyword(s):  
Enterococcus Faecium ◽  
Denaturing Gradient Gel Electrophoresis ◽  
Probiotic Strain ◽  
Quantitative Composition ◽  
Pronounced Increase ◽  
Gradient Gel Electrophoresis ◽  
Suckling Piglets ◽  
Weaning Piglets ◽  
The Impact ◽  
Faecium Strain

Pregnant gilts were fed the probiotic Enterococcus faecium NCIMB10415 (SF68) one month before birth of piglets. DNA extracts of sow faeces taken in weekly intervals as well as extracts from the intestine of their offspring during the suckling period at 12 and 26 days of life were analysed by denaturing gradient gel electrophoresis (DGGE) and quantitative PCR. DGGE profiles of faecal bacterial communities from three out of six probiotic-fed sows were distinctly different from the control and other probiotic-fed sows at all time points after probiotic supplementation. The probiotic-fed sows and their offspring were therefore divided into non-responder (n=3) and responder (n=3) groups. The probiotic strain significantly increased faecal lactobacilli cell numbers in mother sows, which could be assigned to a significant increase of Lactobacillus amylovorus and Lactobacillus acidophilus. Responding sows showed a more pronounced increase than non-responding sows. Similarly, suckling piglets from non-responding and responding sows showed numeric and significant differences for different bacterial groups and species. DGGE profiles of suckling piglets from responding sows also grouped more closely than profiles from control animals. Non-metric multiscaling of suckling piglets showed the same tendency for suckling piglets, but not for post-weaning piglets. This study showed that the probiotic E. faecium strain modified the faecal microbiota of sows. This modification is carried over to their offspring, but leads to changes that do not mirror the quantitative composition in the mother sow. Individual variations in the bacterial composition of mother sows before probiotic feed intake may influence the impact of a probiotic in sows and their offspring.

Microbial Community Analysis of Underground Drinking Water Using Denaturing Gradient Gel Electrophoresis and Flow Cytometry Technologies

2014 ◽  
Vol 700 ◽  
pp. 519-524 ◽  
Author(s):  
Jie Liu ◽  
Yan Li Ding ◽  
Mark Bartlam ◽  
Ying Ying Wang
Keyword(s):  
Drinking Water ◽  
Microbial Community ◽  
Rural Areas ◽  
Denaturing Gradient Gel Electrophoresis ◽  
Poyang Lake ◽  
Removal Rate ◽  
Underground Water ◽  
Water Sources ◽  
Gradient Gel Electrophoresis ◽  
Bacteria And Fungi

Underground water is directly used as drinking water in most rural areas of developing countries due to limitations in infrastructure. As an important indicator of drinking water quality, however, microbial quality has been largely ignored for a long time. Microbial quality poses a great threat to the safety of underground drinking water, especially in rural areas. The current study compared microbial abundance and community structure of three different water sources, i.e. underground water, Poyang Lake and Hai River, combined with flow cytometry (FCM) and denaturing gradient gel electrophoresis (DGGE). FCM results showed that the bacterial concentration of underground water is the lowest (1.037×106cell/ml) of the three water sources, but still approximates that of the Poyang Lake. The removal rate of bacteria after filtration through a 0.45μm-pore-size filter is 98.16% in underground water. The removal rate for Poyang Lake and Hai River is much lower (i.e. 66.57% and 74.17% respectively). DGGE profiles demonstrated that the microbial community structure in underground water shares higher similarity to Poyang Lake (51.0% and 53.1% similarity for bacteria and fungi respectively) than Hai River. The microbial diversity index (i.e. Shannon-Weaver index) for bacteria and fungi are 2.906 and 2.847 respectively in underground water, which is lower than in Poyang Lake. The evenness (i.e. Simpson index) of groundwater was lowest among the three water sources tested. The results suggested that groundwater has a complex microbial community and hence it is critical to apply necessary hygienic barriers to remove microbes for the safety of underground drinking water.

scholarly journals Molecular Analysis of Surfactant-Driven Microbial Population Shifts in Hydrocarbon-Contaminated Soil

2000 ◽  
Vol 66 (7) ◽  
pp. 2959-2964 ◽  
Author(s):  
Gregory M. Colores ◽  
Richard E. Macur ◽  
David M. Ward ◽  
William P. Inskeep
Keyword(s):  
Gel Electrophoresis ◽  
Microbial Population ◽  
Denaturing Gradient Gel Electrophoresis ◽  
Microbial Populations ◽  
Alcohol Ethoxylate ◽  
Rrna Gene ◽  
Mineralization Kinetics ◽  
Gradient Gel Electrophoresis ◽  
The Impact ◽  
Parallel Cultivation

ABSTRACT We analyzed the impact of surfactant addition on hydrocarbon mineralization kinetics and the associated population shifts of hydrocarbon-degrading microorganisms in soil. A mixture of radiolabeled hexadecane and phenanthrene was added to batch soil vessels. Witconol SN70 (a nonionic, alcohol ethoxylate) was added in concentrations that bracketed the critical micelle concentration (CMC) in soil (CMC′) (determined to be 13 mg g−1). Addition of the surfactant at a concentration below the CMC′ (2 mg g−1) did not affect the mineralization rates of either hydrocarbon. However, when surfactant was added at a concentration approaching the CMC′ (10 mg g−1), hexadecane mineralization was delayed and phenanthrene mineralization was completely inhibited. Addition of surfactant at concentrations above the CMC′ (40 mg g−1) completely inhibited mineralization of both phenanthrene and hexadecane. Denaturing gradient gel electrophoresis of 16S rRNA gene segments showed that hydrocarbon amendment stimulatedRhodococcus and Nocardia populations that were displaced by Pseudomonas and Alcaligenespopulations at elevated surfactant levels. Parallel cultivation studies revealed that the Rhodococcus population can utilize hexadecane and that the Pseudomonas andAlcaligenes populations can utilize both Witconol SN70 and hexadecane for growth. The results suggest that surfactant applications necessary to achieve the CMC alter the microbial populations responsible for hydrocarbon mineralization.

scholarly journals Efficacy of Rifaximin Vaginal Tablets in Treatment of Bacterial Vaginosis: a Molecular Characterization of the Vaginal Microbiota

2012 ◽  
Vol 56 (8) ◽  
pp. 4062-4070 ◽  
Author(s):  
Federica Cruciani ◽  
Patrizia Brigidi ◽  
Fiorella Calanni ◽  
Vittoria Lauro ◽  
Raffaella Tacchi ◽  
...  
Keyword(s):  
Bacterial Vaginosis ◽  
Denaturing Gradient Gel Electrophoresis ◽  
Vaginal Microbiota ◽  
Controlled Study ◽  
Double Blind ◽  
Content Type ◽  
Sexually Transmitted ◽  
Gradient Gel Electrophoresis ◽  
Adverse Pregnancy ◽  
The Impact

ABSTRACTBacterial vaginosis (BV) is a common vaginal disorder characterized by an alteration of the vaginal bacterial morphotypes, associated with sexually transmitted infections and adverse pregnancy outcomes. The purpose of the present study was to evaluate the impact of different doses of rifaximin vaginal tablets (100 mg/day for 5 days, 25 mg/day for 5 days, and 100 mg/day for 2 days) on the vaginal microbiota of 102 European patients with BV enrolled in a multicenter, double-blind, randomized, placebo-controlled study. An integrated molecular approach based on quantitative PCR (qPCR) and PCR-denaturing gradient gel electrophoresis (PCR-DGGE) was used to investigate the effects of vaginal tablets containing the antibiotic. An increase in members of the genusLactobacillusand a decrease in the BV-related bacterial groups after the antibiotic treatment were demonstrated by qPCR. PCR-DGGE profiles confirmed the capability of rifaximin to modulate the composition of the vaginal microbial communities and to reduce their complexity. This molecular analysis supported the clinical observation that rifaximin at 25 mg/day for 5 days represents an effective treatment to be used in future pivotal studies for the treatment of BV.

scholarly journals Impact of Protists on the Activity and Structure of the Bacterial Community in a Rice Field Soil

2006 ◽  
Vol 72 (8) ◽  
pp. 5436-5444 ◽  
Author(s):  
Jun Murase ◽  
Matthias Noll ◽  
Peter Frenzel
Keyword(s):  
Surface Layer ◽  
Denaturing Gradient Gel Electrophoresis ◽  
Subsurface Layer ◽  
Molecular Ecology ◽  
Rflp Analysis ◽  
Small Subunit ◽  
Rice Fields ◽  
Bacterial Assemblage ◽  
Protistan Grazing ◽  
The Impact

ABSTRACT Flooded rice fields have become a model system for the study of soil microbial ecology. In Italian rice fields, in particular, aspects from biogeochemistry to molecular ecology have been studied, but the impact of protistan grazing on the structure and function of the prokaryotic community has not been examined yet. We compared an untreated control soil with a γ-radiation-sterilized soil that had been reinoculated with a natural bacterial assemblage. In order to verify that the observed effects were due to protistan grazing and did not result from sterilization, we set up a third set of microcosms containing sterilized soil that had been reinoculated with natural assemblage bacteria plus protists. The spatial and temporal changes in the protistan and prokaryotic communities were examined by denaturing gradient gel electrophoresis (DGGE) and terminal restriction fragment length polymorphism (T-RFLP) analysis, respectively, both based on the small-subunit gene. Sequences retrieved from DGGE bands were preferentially affiliated with Cercozoa and other bacteriovorous flagellates. Without protists, the level of total DNA increased with incubation time, indicating that the level of the microbial biomass was elevated. Betaproteobacteria were preferentially preyed upon, while low-G+C-content gram-positive bacteria became more dominant under grazing pressure. The bacterial diversity detectable by T-RFLP analysis was greater in the presence of protists. The level of extractable NH4 + was lower and the level of extractable SO4 2− was higher without protists, indicating that nitrogen mineralization and SO4 2− reduction were stimulated by protists. Most of these effects were more obvious in the partially oxic surface layer (0 to 3 mm), but they could also be detected in the anoxic subsurface layer (10 to 13 mm). Our observations fit well into the overall framework developed for protistan grazing, but with some modifications pertinent to the wetland situation: O2 was a major control, and O2 availability may have limited directly and indirectly the development of protists. Although detectable in the lower anoxic layer, grazing effects were much more obvious in the partially oxic surface layer.

Influence of Materials, Water Qualities and Disinfection Methods on the Drinking Water Biofilm Community

2010 ◽  
Vol 5 (4) ◽  
Author(s):  
R. S. Roeder ◽  
K. Heeg ◽  
P. Tarne ◽  
J. K. Benölken ◽  
G. Schaule ◽  
...  
Keyword(s):  
Drinking Water ◽  
Denaturing Gradient Gel Electrophoresis ◽  
Pipe Material ◽  
Long Term Effect ◽  
The Family ◽  
Gradient Gel Electrophoresis ◽  
Previously Treated ◽  
Community Fingerprinting ◽  
Cleaning And Disinfection

The composition of biofilm populations in drinking water will mainly depend on the nutrient availability and the temperature. The nutrients may originate either from the raw water or from the installation materials. To determine the effect of drinking water pipe materials on the composition of biofilm populations, biofilms grown on different materials (EPDM materials, PEXb, PEXc and copper) were analyzed by cloning (16S rDNA) and the community fingerprinting method denaturing gradient gel electrophoresis (DGGE). Additionally the long-term effect of mechanical cleaning and disinfection with chlorine dioxide (0.2 mg/l, 24h) on the biofilm populations was tested. The biofilm populations had high diversities on growth supporting materials like EPDM and comparatively low diversity on PEX. The biofilms were dominated by Proteobacteria and the composition of the subdivisions was influenced by the applied material. Flavobacteria and members of the family Sphingomonadaceae, which are known to degrade several organic compounds, were found on EPDM materials and might be suitable as indicators for hygienical relevant materials. Comparison of biofilms previously treated with disinfectants with untreated ones by DGGE revealed a considerable population shift depending on the pipe material.

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