scholarly journals Genome-wide interval mapping using SNPs identifies new QTL for growth, body composition and several physiological variables in an F2 intercross between fat and lean chicken lines

2013 ◽  
Vol 45 (1) ◽  
Author(s):  
Olivier Demeure ◽  
Michel J Duclos ◽  
Nicola Bacciu ◽  
Guillaume Le Mignon ◽  
Olivier Filangi ◽  
...  
Genetics ◽  
2001 ◽  
Vol 157 (1) ◽  
pp. 283-294 ◽  
Author(s):  
Kristie Ashton ◽  
Ana Patricia Wagoner ◽  
Roland Carrillo ◽  
Greg Gibson

AbstractDrosophila melanogaster appears to be well suited as a model organism for quantitative pharmacogenetic analysis. A genome-wide deficiency screen for haploinsufficient effects on prepupal heart rate identified nine regions of the genome that significantly reduce (five deficiencies) or increase (four deficiencies) heart rate across a range of genetic backgrounds. Candidate genes include several neurotransmitter receptor loci, particularly monoamine receptors, consistent with results of prior pharmacological manipulations of heart rate, as well as genes associated with paralytic phenotypes. Significant genetic variation is also shown to exist for a suite of four autonomic behaviors that are exhibited spontaneously upon decapitation, namely, grooming, grasping, righting, and quivering. Overall activity levels are increased by application of particular concentrations of the drugs octopamine and nicotine, but due to high environmental variance both within and among replicate vials, the significance of genetic variation among wild-type lines for response to the drugs is difficult to establish. An interval mapping design was also used to map two or three QTL for each behavioral trait in a set of recombinant inbred lines derived from the laboratory stocks Oregon-R and 2b.


2016 ◽  
Vol 183 ◽  
pp. 4-11 ◽  
Author(s):  
Ziqing Weng ◽  
Hailin Su ◽  
Mahdi Saatchi ◽  
Jungjae Lee ◽  
Milton G. Thomas ◽  
...  

2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Jingli Zhao ◽  
Shuling Li ◽  
Lijuan Wang ◽  
Li Jiang ◽  
Runqing Yang ◽  
...  

2006 ◽  
Vol 85 (10) ◽  
pp. 1712-1721 ◽  
Author(s):  
H. Zhou ◽  
N. Deeb ◽  
C.M. Evock-Clover ◽  
C.M. Ashwell ◽  
S.J. Lamont

2011 ◽  
Vol 43 (4) ◽  
pp. 199-212 ◽  
Author(s):  
Scott A. Kelly ◽  
Derrick L. Nehrenberg ◽  
Kunjie Hua ◽  
Theodore Garland ◽  
Daniel Pomp

The regulation of body weight and composition is complex, simultaneously affected by genetic architecture, the environment, and their interactions. We sought to analyze the complex phenotypic relationships between voluntary exercise, food consumption, and changes in body weight and composition and simultaneously localize quantitative trait loci (QTL) controlling these traits. A large ( n = 815) murine advanced intercross line (G4) was created from a reciprocal cross between a high-running line and the inbred strain C57BL/6J. Body weight and composition (% fat, % lean) were measured at 4, 6, and 8 wk of age. After measurements at 8 wk of age, mice were given access to running wheels, during which food consumption was quantified and after which body weight and composition were assessed to evaluate exercise-induced changes. Phenotypic correlations indicated that the relationship between exercise and overall change in weight and adiposity depended on body composition before the initiation of exercise. Interval mapping revealed QTL for body weight, % fat, and % lean at 4, 6, and 8 wk of age. Furthermore, QTL were observed for food consumption and changes in weight, % fat, and % lean in response to short-term exercise. Here we provide some clarity for the relationship between weight loss, reduction in adiposity, food consumption, and exercise. Simultaneously, we reinforce the genetic basis for body weight and composition with some independent loci controlling growth at different ages. Finally, we present unique QTL providing insight regarding variation in weight loss and reduction in adiposity in response to exercise.


1981 ◽  
Vol 25 (1) ◽  
pp. 774-778
Author(s):  
Alex Loewenthal ◽  
David J. Cochran ◽  
Michael W. Riley

Nine fully acclimatized men falling in the lean, medium and obese categories of body composition were observed during heat exposure periods for four days following acclimatization decay periods of various lengths in order to determine the effects of body composition on the decay and reinduction of acclimatization. The physiological variables taken into consideration were core temperature, “DuBois” mean skin temperature, heart rate, weight loss due to perspiration and the temperature differential between the core and surface. All of the men were subjected to an acclimatization schedule of twelve daily sessions in order to insure that they were all fully acclimatized. Three decay, or non-exposure, periods of four, eight and twelve days were each followed by four days of reinduction. It was determined that body composition does not affect the rate of decay or reinduction of acclimatization, although this parameter as well as the extent of decay and the duration of the reinduction period does affect the physiological variables monitored in this study.


2020 ◽  
Vol 13(62) (2) ◽  
pp. 219-226
Author(s):  
C.K. PASWAN

Cerebral palsy is one of the known and famous types of neurological impairment among children across the globe. The study aimed to see the effect of graded conditioning and exercises over some of the physiological variables of children with cerebral palsy. For the purpose of the study 20 children with cerebral palsy were selected and were divided into two groups of ten each the experimental group were given the treatment and the other was the kept as control group for twelve weeks. To obtain the results the analysis of co-variance was applied and it was seen that resting heart rate (.006), triceps girth (.002), suprailliac girth (.002), abdominal umbilicus (.001), sub-scapular girth (.009), positive breath holding capacity (.007) and cardio-respiratory endurance (.001) showed positive significance at .005 level. As after twelve weeks of graded conditioning it can be seen that most of the physiological variables and variables of body composition showed great signs of improvement and showed positive significance, so it can be concluded that with good graded training (according to their need and capability) the positive physiological improvement can be made among children with cerebral palsy.


Author(s):  
Md. Jahangir Alam ◽  
Md. Ripter Hossain ◽  
S. M. Shahinul Islam ◽  
Md. Nurul Haque Mollah

Multivariate simple interval mapping (SIM) is one of the most popular approaches for multiple quantitative trait locus (QTL) analysis. Both maximum likelihood (ML) and least squares (LS) multivariate regression (MVR) are widely used methods for multi-trait SIM. ML-based MVR (MVR-ML) is an expectation maximization (EM) algorithm based iterative and complex time-consuming approach. Although the LS-based MVR (MVR-LS) approach is not an iterative process, the calculation of likelihood ratio (LR) statistic in MVR-LS is also a time-consuming complex process. We have introduced a new approach (called FastMtQTL) for multi-trait QTL analysis based on the assumption of multivariate normal distribution of phenotypic observations. Our proposed method can identify almost the same QTL positions as those identified by the existing methods. Moreover, the proposed method takes comparatively less computation time because of the simplicity in the calculation of LR statistic by this method. In the proposed method, LR statistic is calculated only using the sample variance–covariance matrix of phenotypes and the conditional probability of QTL genotype given the marker genotypes. This improvement in computation time is advantageous when the numbers of phenotypes and individuals are larger, and the markers are very dense resulting in a QTL mapping with a bigger dataset.


Sign in / Sign up

Export Citation Format

Share Document