scholarly journals Anne O'Tate: A tool to support user-driven summarization, drill-down and browsing of PubMed search results

2008 ◽  
Vol 3 (1) ◽  
pp. 2 ◽  
Author(s):  
Neil R Smalheiser ◽  
Wei Zhou ◽  
Vetle I Torvik
Keyword(s):  
Search Results ◽  
Pubmed Search ◽  
Drill Down

scholarly journals Treatment of Pellucid Marginal Degeneration

2017 ◽  
Vol 6 (2) ◽  
pp. 87-91
Author(s):  
Abdelsattar N Farrag ◽  
Ahmed A Hussein ◽  
Shiji Ummar
Keyword(s):  
Literature Search ◽  
Published Data ◽  
Corneal Ectasia ◽  
Therapeutic Modalities ◽  
Search Results ◽  
Search Terms ◽  
Pubmed Search ◽  
Recent Trends ◽  
Collagen Cross Linking ◽  
Corneal Collagen

ABSTRACT Purpose To summarize the recent trends in the treatment of pellucid marginal degeneration (PMD) based on available published data. Method and literature search A PubMed search was conducted with combinations not limited to the following search terms: Pellucid marginal degeneration, Corneal ectasia, Corneal collagen cross-linking (CXL), Intracorneal ring segments (ICRS), Contact lens, Keratoplasty in corneal ectasia. A review of the search results was performed and relevant articles to the topic were included. Summary Ophthalmologists have got a wide array of therapeutic modalities for the management of PMD. However, the key to optimal treatment is careful clinical assessment of patients and their visual requirements and tailoring the treatment to individual patients. How to cite this article Farrag AN, Hussein AA, Ummar S. Treatment of Pellucid Marginal Degeneration. Int J Kerat Ect Cor Dis 2017;6(2):87-91.

scholarly journals Tool for filtering PubMed search results by sample size

2018 ◽  
Vol 25 (7) ◽  
pp. 774-779
Author(s):  
Carlos Baladrón ◽  
Alejandro Santos-Lozano ◽  
Javier M Aguiar ◽  
Alejandro Lucia ◽  
Juan Martín-Hernández
Keyword(s):  
Clinical Trials ◽  
Sample Size ◽  
Search Engine ◽  
Sample Sizes ◽  
Search Results ◽  
Estimate Sample Size ◽  
Search Tool ◽  
Pubmed Search ◽  
Meta Analyses ◽  
Validation Tests

Abstract Objective The most used search engine for scientific literature, PubMed, provides tools to filter results by several fields. When searching for reports on clinical trials, sample size can be among the most important factors to consider. However, PubMed does not currently provide any means of filtering search results by sample size. Such a filtering tool would be useful in a variety of situations, including meta-analyses or state-of-the-art analyses to support experimental therapies. In this work, a tool was developed to filter articles identified by PubMed based on their reported sample sizes. Materials and Methods A search engine was designed to send queries to PubMed, retrieve results, and compute estimates of reported sample sizes using a combination of syntactical and machine learning methods. The sample size search tool is publicly available for download at http://ihealth.uemc.es. Its accuracy was assessed against a manually annotated database of 750 random clinical trials returned by PubMed. Results Validation tests show that the sample size search tool is able to accurately (1) estimate sample size for 70% of abstracts and (2) classify 85% of abstracts into sample size quartiles. Conclusions The proposed tool was validated as useful for advanced PubMed searches of clinical trials when the user is interested in identifying trials of a given sample size.

scholarly journals Using the NIFSTD Ontology to Improve PubMed Search Results

2013 ◽  
Vol 7 ◽  
Author(s):  
Sabnani Hitesh ◽  
Bandrowski Anita ◽  
Gupta Amarnath
Keyword(s):  
Search Results ◽  
Pubmed Search

scholarly journals Corneal Collagen Cross-linking in Infective Keratitis

2016 ◽  
Vol 5 (1) ◽  
pp. 13-16
Author(s):  
Shiji Ummar
Keyword(s):  
Fungal Keratitis ◽  
Cross Linking ◽  
Microbial Keratitis ◽  
Ultraviolet A ◽  
Search Results ◽  
Search Terms ◽  
Pubmed Search ◽  
Slow Growing ◽  
Collagen Cross Linking ◽  
Corneal Collagen

ABSTRACT Purpose of review To summarize the current understanding of effects of cross-linking (CXL) in infective keratitis based on available evidence. Method of literature search A PubMed search was conducted with combinations not limited to the following search terms: corneal collagen CXL, riboflavin, ultraviolet A, keratoconus, microbial keratitis, fungal keratitis, bacterial keratitis, Acantha-moeba keratitis. A review of the search results was performed and relevant articles to the topic were included. Summary Most of the published literature showed promising results in treatment of infectious keratitis by corneal collagen CXL using photoactivated riboflavin as an adjuvant therapy but with questionable efficacy in deep keratitis due to slow-growing organisms. How to cite this article Ummar S, Farrag AN. Corneal Collagen Cross-linking in Infective Keratitis. Int J Kerat Ect Cor Dis 2016;5(1):13-16.

scholarly journals Publication Rate of Podium Presentations From the North American Spine Society Annual Meetings

2017 ◽  
Vol 8 (3) ◽  
pp. 273-278 ◽  
Author(s):  
Brandon Raudenbush ◽  
Chelsea Frost ◽  
Richard Okafor ◽  
Chongshu Chen ◽  
Xing Qui ◽  
...  
Keyword(s):  
North American ◽  
Conflicts Of Interest ◽  
Scientific Journal ◽  
Publication Rate ◽  
Search Results ◽  
The North ◽  
Significant Difference ◽  
Pubmed Search ◽  
Society Annual ◽  
European Spine Journal

Study Design: Observational study. Objectives: To determine the publication rate of podium presentations from the North American Spine Society (NASS) annual meetings from the years 2009 to 2011. Methods: In April 2015, a PubMed search was conducted using titles from the paper presentations as well as the authors. Of the search results that were found, the specific scientific journal in which the article was published was recorded. We analyzed further the top 4 destination journals and trends in publications in these journals over the study period. No study funding was obtained for this research, and there are no potential conflicts of interest or associated biases. Results: Over the study period, 671 paper presentations were available and 342 were published (51% publication rate). The highest publication rate was from the 2011 annual meeting, with 55.3%, and the lowest year was 2010, with a rate of 46.43%. Spine (32.75%), The Spine Journal (19.01%), Journal of Neurosurgery Spine (7.31%), and European Spine Journal (6.73%) were the top 4 destination journals. Over the study period, we found a significant decrease in publication rate in Spine ( P = .001) and a significant increase in publication rate in The Spine Journal ( P = .003). There were no significant difference in publication rate over the study period in Journal of Neurosurgery Spine ( P = .15) or European Spine Journal ( P = .23). Conclusions: This is the first study to our knowledge evaluating the publication rate of podium presentations from recent North American Spine Society annual meetings. We found an overall publication rate of 51%.

scholarly journals Anne O’Tate: Value-added PubMed search engine for analysis and text mining

PLoS ONE ◽  
2021 ◽  
Vol 16 (3) ◽  
pp. e0248335
Author(s):  
Neil R. Smalheiser ◽  
Dean P. Fragnito ◽  
Eric E. Tirk
Keyword(s):  
Search Engine ◽  
Scientific Community ◽  
Value Added ◽  
Biomedical Literature ◽  
Web Based ◽  
Search Results ◽  
Wide Range ◽  
Pubmed Search ◽  
Study Designs ◽  
Number Of Authors

Over a decade ago, we introduced Anne O’Tate, a free, public web-based tool http://arrowsmith.psych.uic.edu/cgi-bin/arrowsmith_uic/AnneOTate.cgi to support user-driven summarization, drill-down and mining of search results from PubMed, the leading search engine for biomedical literature. A set of hotlinked buttons allows the user to sort and rank retrieved articles according to important words in titles and abstracts; topics; author names; affiliations; journal names; publication year; and clustered by topic. Any result can be further mined by choosing any other button, and small search results can be expanded to include related articles. It has been deployed continuously, serving a wide range of biomedical users and needs, and over time has also served as a platform to support the creation of new tools that address additional needs. Here we describe the current, greatly expanded implementation of Anne O’Tate, which has added additional buttons to provide new functionalities: We now allow users to sort and rank search results by important phrases contained in titles and abstracts; the number of authors listed on the article; and pairs of topics that co-occur significantly more than chance. We also display articles according to NLM-indexed publication types, as well as according to 50 different publication types and study designs as predicted by a novel machine learning-based model. Furthermore, users can import search results into two new tools: e) Mine the Gap!, which identifies pairs of topics that are under-represented within set of the search results, and f) Citation Cloud, which for any given article, allows users to visualize the set of articles that cite it; that are cited by it; that are co-cited with it; and that are bibliographically coupled to it. We invite the scientific community to explore how Anne O’Tate can assist in analyzing biomedical literature, in a variety of use cases.

Cognitive Development in Children with Rolandic Epilepsy: Results of a Current PubMed Search

2015 ◽  
Vol 46 (S 01) ◽  
Author(s):  
H. Neumann ◽  
K. Weigt-Usinger ◽  
L. Selzer ◽  
F. Helmke ◽  
C. Thiels ◽  
...  
Keyword(s):  
Cognitive Development ◽  
Rolandic Epilepsy ◽  
Pubmed Search ◽  
A Current

Studi Eksegetis Yohanes 1:1-18 Sebagai Apologetik Terhadap Kristologi Saksi Yehuwa

2016 ◽  
Vol 1 (2) ◽  
pp. 1-41
Author(s):  
Pangeran Manurung
Keyword(s):  
Striking Difference ◽  
Human Being ◽  
John 1 ◽  
Jehovah’S Witnesses ◽  
Jehovah's Witnesses ◽  
Jehovah's Witness ◽  
Search Results ◽  
The Bible ◽  
God The Father ◽  
The Difference

Eksegesa John 1 : 1-18 shows that the Jehovah's Witness teachings deviate from the truth of the Bible and dangerous for Christians . The danger Christology of Jehovah's Witnesses should be bringing us to the prudence and discretion to reject it . It can be said that Jehovah's Witnesses do not include Christianity in accordance with the search results against their teachings . first ; they do not recognize the Bible that has been issued by the Indonesian National Bible Institute and consider if the Bible has too much harm to use their own New Translation of the Holy Scriptures that have been proven not a translation , but just a collection of interpretations and teachings of their leader alone . second ; Jehovah's Witnesses do not acknowledge Jesus as Lord and Savior only . They simply believe that salvation is obtained through belief in Jehovah and his kingdom and perform service message and follow the trial associations .                Before errors interfere Christology Christology of Jehovah's Witnesses Bible , please note that the topic of Christology is the difference between Christianity and other religions . This discussion has also become one of the topics that face many attacks from the outside or from within Christianity , either in the form of religion , philosophy , and ideology . The debate on this topic appeared since the beginning of Christianity , and give rise to a long and complex debate for nearly three centuries ( 300 years ) !! . Such debates will continue to exist throughout the period and just a rehash issues that had once appeared . And Christians should study the various debates and views of the ever emerging that are not easily fooled by the views back to this era .Eksegesa John 1 : 1-18 has been done and produce a biblical Christology and biblical correct . The truth is not in doubt because of the analysis conducted in accordance with the procedures and rules that apply in general . Now if Christology Christology of John compared with Jehovah's Witnesses, it will show a striking difference . Once observed , Christology Witnesses builds upon the interpretation of individuals who previously have had a negative Christological doctrine .                Conclusion those who think that Jesus is the firstborn of Creation ; Jesus was a human being ; Jesus is God in creating a peer ; Jesus lower than God , Jesus is the Angel Gabriel , and other Christological doctrine which basically degrading nature of Christ is a form of insult to the majesty of Christ . The Bible clearly and emphatically teaches that Christ is God incarnate , private alpha and omega , the creator of all that exists , and the equivalent of God the Father . Summing Christ as superior human or clear eldest creation is false teachings . The followers of Jehovah's Witnesses must repent. Amen

Influence of Next-Generation Sequencing on Advancements in the Diagnosis of Major Psychiatric Diseases - A Review

2020 ◽  
Author(s):  
Maheen Nisar
Keyword(s):  
Next Generation Sequencing ◽  
Mental Disorders ◽  
Attention Deficit Disorder ◽  
Autism Spectrum ◽  
Next Generation ◽  
Single Nucleotide Variants ◽  
New Genes ◽  
Depth Analysis ◽  
Pubmed Search ◽  
Generation Sequencing

Rapid progress is being made in the development of next-generation sequencing (NGS) technologies, allowing repeated findings of new genes and a more in-depth analysis of genetic polymorphisms behind the pathogenesis of a disease. In a field such as psychiatry, characteristic of vague and highly variable somatic manifestations, these technologies have brought great advances towards diagnosing various psychiatric and mental disorders, identifying high-risk individuals and towards more effective corresponding treatment. Psychiatry has the difficult task of diagnosing and treating mental disorders without being able to invariably and definitively establish the properties of its illness. This calls for diagnostic technologies that go beyond the traditional ways of gene manipulation to more advanced methods mainly focusing on new gene polymorphism discoveries, one of them being NGS. This enables the identification of hundreds of common and rare genetic variations contributing to behavioral and psychological conditions. Clinical NGS has been useful to detect copy number and single nucleotide variants and to identify structural rearrangements that have been challenging for standard bioinformatics algorithms. The main objective of this article is to review the recent applications of NGS in the diagnosis of major psychiatric disorders, and hence gauge the extent of its impact in the field. A comprehensive PubMed search was conducted and papers published from 2013-2018 were included, using the keywords, “schizophrenia” or “bipolar disorder” or “depressive disorder” or “attention deficit disorder” or “autism spectrum disorder” and “next-generation sequencing”

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