scholarly journals U-Net combined with multi-scale attention mechanism for liver segmentation in CT images

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Jiawei Wu ◽  
Shengqiang Zhou ◽  
Songlin Zuo ◽  
Yiyin Chen ◽  
Weiqin Sun ◽  
...  
Keyword(s):  
Work Experience ◽  
Spatial Location ◽  
Ct Images ◽  
Attention Mechanism ◽  
Dice Similarity Coefficient ◽  
Liver Segmentation ◽  
Multi Scale ◽  
Segmentation Methods ◽  
Spatial Location Information ◽  
Liver Region

Abstract Background The liver is an important organ that undertakes the metabolic function of the human body. Liver cancer has become one of the cancers with the highest mortality. In clinic, it is an important work to extract the liver region accurately before the diagnosis and treatment of liver lesions. However, manual liver segmentation is a time-consuming and boring process. Not only that, but the segmentation results usually varies from person to person due to different work experience. In order to assist in clinical automatic liver segmentation, this paper proposes a U-shaped network with multi-scale attention mechanism for liver organ segmentation in CT images, which is called MSA-UNet. Our method makes a new design of U-Net encoder, decoder, skip connection, and context transition structure. These structures greatly enhance the feature extraction ability of encoder and the efficiency of decoder to recover spatial location information. We have designed many experiments on publicly available datasets to show the effectiveness of MSA-UNet. Compared with some other advanced segmentation methods, MSA-UNet finally achieved the best segmentation effect, reaching 98.00% dice similarity coefficient (DSC) and 96.08% intersection over union (IOU).

scholarly journals Liver Segmentation Based on Snakes Model and Improved GrowCut Algorithm in Abdominal CT Image

2013 ◽  
Vol 2013 ◽  
pp. 1-12 ◽  
Author(s):  
Huiyan Jiang ◽  
Baochun He ◽  
Zhiyuan Ma ◽  
Mao Zong ◽  
Xiangrong Zhou ◽  
...  
Keyword(s):  
Ct Images ◽  
Experimental Results ◽  
Initial Contour ◽  
Segmentation Result ◽  
Ct Image ◽  
Liver Segmentation ◽  
Abdominal Ct ◽  
Running Time ◽  
Novel Method ◽  
Liver Region

A novel method based on Snakes Model and GrowCut algorithm is proposed to segment liver region in abdominal CT images. First, according to the traditional GrowCut method, a pretreatment process using K-means algorithm is conducted to reduce the running time. Then, the segmentation result of our improved GrowCut approach is used as an initial contour for the future precise segmentation based on Snakes model. At last, several experiments are carried out to demonstrate the performance of our proposed approach and some comparisons are conducted between the traditional GrowCut algorithm. Experimental results show that the improved approach not only has a better robustness and precision but also is more efficient than the traditional GrowCut method.

Modified Rolling-Ball Method for Pulmonary Parenchyma Segmentation

2020 ◽  
Vol 10 (2) ◽  
pp. 364-369
Author(s):  
Qi Mao ◽  
Shuguang Zhao
Keyword(s):  
Lung Cancer ◽  
Relative Survival ◽  
Lung Parenchyma ◽  
Ct Images ◽  
Dice Similarity Coefficient ◽  
Rolling Ball ◽  
Lung Cancer Patients ◽  
Multi Scale ◽  
Pulmonary Parenchyma ◽  
Novel Method

Background: Computer-aided detection/diagnosis (CAD) of lung nodules is a practical approach to improve the relative survival of lung cancer patients. Pulmonary parenchyma segmentation is an essential part of the CAD systems for detecting lung cancer. Methods: To solve the problems of improper segmentation and incomplete repair with the traditional rolling-ball method (RBM), we proposed a novel method with a multi-scale rolling-ball for pulmonary parenchyma segmentation. The traditional RBM suffers from the problem that there is often a mismatch between the rolling-ball radius and the size of the boundary defect. Additionally, the shapes of the rolling-ball and lung parenchyma are mismatched, which results in incomplete restoration of the boundary of lung parenchyma. Therefore, to address these issues, a novel multi-scale elliptic RBM (ME-RBM) is proposed for pulmonary parenchyma segmentation in this work. Results: The proposed approach was used to segment the lung parenchyma in 60 computed tomography (CT) images. The results revealed an area overlap measure (AOM) of 96.34%, dice similarity coefficient (DSC) of 97.83% and sensitivity (Sens) of 98.93%. Conclusion: A novel modified rolling-ball method was proposed and developed in this work for pulmonary parenchyma segmentation on chest CT images. The experimental results showed that the proposed approach was accurate and reliable.

scholarly journals A multi-scale gated multi-head attention depthwise separable CNN model for recognizing COVID-19

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Geng Hong ◽  
Xiaoyan Chen ◽  
Jianyong Chen ◽  
Miao Zhang ◽  
Yumeng Ren ◽  
...  
Keyword(s):  
Cross Validation ◽  
Ct Images ◽  
Attention Mechanism ◽  
X Ray ◽  
Multi Scale ◽  
Specificity And Sensitivity ◽  
The World ◽  
Tenfold Cross Validation ◽  
Model Size ◽  
Feature Information

AbstractCoronavirus 2019 (COVID-19) is a new acute respiratory disease that has spread rapidly throughout the world. In this paper, a lightweight convolutional neural network (CNN) model named multi-scale gated multi-head attention depthwise separable CNN (MGMADS-CNN) is proposed, which is based on attention mechanism and depthwise separable convolution. A multi-scale gated multi-head attention mechanism is designed to extract effective feature information from the COVID-19 X-ray and CT images for classification. Moreover, the depthwise separable convolution layers are adopted as MGMADS-CNN’s backbone to reduce the model size and parameters. The LeNet-5, AlexNet, GoogLeNet, ResNet, VGGNet-16, and three MGMADS-CNN models are trained, validated and tested with tenfold cross-validation on X-ray and CT images. The results show that MGMADS-CNN with three attention layers (MGMADS-3) has achieved accuracy of 96.75% on X-ray images and 98.25% on CT images. The specificity and sensitivity are 98.06% and 96.6% on X-ray images, and 98.17% and 98.05% on CT images. The size of MGMADS-3 model is only 43.6 M bytes. In addition, the detection speed of MGMADS-3 on X-ray images and CT images are 6.09 ms and 4.23 ms for per image, respectively. It is proved that the MGMADS-3 can detect and classify COVID-19 faster with higher accuracy and efficiency.

Segmentations of Liver and Hepatic Tumors from 3D Computed Tomography Abdominal Images

2014 ◽  
Vol 898 ◽  
pp. 684-687
Author(s):  
Yun Tao Wei ◽  
Yi Bing Zhou
Keyword(s):  
Computed Tomography ◽  
Liver Tissue ◽  
Processing Time ◽  
Ct Images ◽  
Graph Cut ◽  
Evaluation Framework ◽  
Dice Similarity Coefficient ◽  
Hepatic Tumors ◽  
Liver Segmentation ◽  
Fully Automatic

The segmentation of liver using computed tomography (CT) data has gained a lot of importance in the medical image processing field. In this paper, we present a survey on liver segmentation methods and techniques using CT images for liver segmentation. An adaptive initialization method was developed to produce fully automatic processing frameworks based on graph-cut and gradient flow active contour algorithms. This method was applied to abdominal Computed Tomography (CT) images for segmentation of liver tissue and hepatic tumors. Twenty-five anonymized datasets were randomly collected from several radiology centres without specific request on acquisition parameter settings nor patient clinical situation as inclusion criteria. Resulting automatic segmentations of liver tissue and tumors were compared to their reference standard delineations manually performed by a specialist. Segmentation accuracy has been assessed through the following evaluation framework: dice similarity coefficient, false negative ratio, false positive ratio and processing time. The implemented initialization method allows fully automatic segmentation leading to superior overall performances of graph-cut algorithm in terms of accuracy and processing time. The initialization method here presented resulted suitable and reliable for two different segmentation techniques and could be further extended.

Research on CT Image Segmentation of Computer-Aided Liver Operation

2014 ◽  
Vol 513-517 ◽  
pp. 3115-3121
Author(s):  
Yun Tao Wei ◽  
Yi Bing Zhou
Keyword(s):  
A Priori ◽  
Liver Segmentation ◽  
Segmentation Methods ◽  
Pros And Cons ◽  
Automatic Methods ◽  
Fully Automatic ◽  
Ct Data ◽  
Liver Region ◽  
The Comparative Study ◽  
Threshold Process

The segmentation of liver using computed tomography (CT) data has gained a lot of importance in the medical image processing field. In this paper, we present a survey on liver segmentation methods and techniques using CT images for liver segmentation. Generally, liver segmentation methods are divided into two main classes, semi-automatic and fully automatic methods, under each of these two categories, several methods, approaches, related issues and problems will be defined and explained. The evaluation measurements and scoring for the liver segmentation are shown, followed by the comparative study for liver segmentation methods, pros and cons of methods will be accentuated carefully. Here a fully 3D algorithm for automatic liver segmentation from CT volumetric datasets is presented. The algorithmstarts by smoothing the original volume using anisotropic diffusion. The coarse liver region is obtained from the threshold process that is based on a priori knowledge.

scholarly journals Impact of segmentation and discretization on radiomic features in 68Ga-DOTA-TOC PET/CT images of neuroendocrine tumor

2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Virginia Liberini ◽  
Bruno De Santi ◽  
Osvaldo Rampado ◽  
Elena Gallio ◽  
Beatrice Dionisi ◽  
...  
Keyword(s):  
Correlation Coefficients ◽  
Ct Images ◽  
Mean Value ◽  
Biological Information ◽  
Dice Similarity Coefficient ◽  
Manual Segmentation ◽  
Pet Ct ◽  
Segmentation Methods ◽  
Edge Based ◽  
The Impact

Abstract Objective To identify the impact of segmentation methods and intensity discretization on radiomic features (RFs) extraction from 68Ga-DOTA-TOC PET images in patients with neuroendocrine tumors. Methods Forty-nine patients were retrospectively analyzed. Tumor contouring was performed manually by four different operators and with a semi-automatic edge-based segmentation (SAEB) algorithm. Three SUVmax fixed thresholds (20, 30, 40%) were applied. Fifty-one RFs were extracted applying two different intensity rescale factors for gray-level discretization: one absolute (AR60 = SUV from 0 to 60) and one relative (RR = min-max of the VOI SUV). Dice similarity coefficient (DSC) was calculated to quantify segmentation agreement between different segmentation methods. The impact of segmentation and discretization on RFs was assessed by intra-class correlation coefficients (ICC) and the coefficient of variance (COVL). The RFs’ correlation with volume and SUVmax was analyzed by calculating Pearson’s correlation coefficients. Results DSC mean value was 0.75 ± 0.11 (0.45–0.92) between SAEB and operators and 0.78 ± 0.09 (0.36–0.97), among the four manual segmentations. The study showed high robustness (ICC > 0.9): (a) in 64.7% of RFs for segmentation methods using AR60, improved by applying SUVmax threshold of 40% (86.5%); (b) in 50.9% of RFs for different SUVmax thresholds using AR60; and (c) in 37% of RFs for discretization settings using different segmentation methods. Several RFs were not correlated with volume and SUVmax. Conclusions RFs robustness to manual segmentation resulted higher in NET 68Ga-DOTA-TOC images compared to 18F-FDG PET/CT images. Forty percent SUVmax thresholds yield superior RFs stability among operators, however leading to a possible loss of biological information. SAEB segmentation appears to be an optimal alternative to manual segmentation, but further validations are needed. Finally, discretization settings highly impacted on RFs robustness and should always be stated.

scholarly journals SD-UNet: A Novel Segmentation Framework for CT Images of Lung Infections

Electronics ◽  
2022 ◽  
Vol 11 (1) ◽  
pp. 130
Author(s):  
Shuangcai Yin ◽  
Hongmin Deng ◽  
Zelin Xu ◽  
Qilin Zhu ◽  
Junfeng Cheng
Keyword(s):  
Texture Features ◽  
Ground Truth ◽  
Lung Infection ◽  
Ct Images ◽  
Dice Similarity Coefficient ◽  
Health Crisis ◽  
Low Contrast ◽  
Global Context ◽  
Multi Scale ◽  
Lung Infections

Due to the outbreak of lung infections caused by the coronavirus disease (COVID-19), humans have to face an unprecedented and devastating global health crisis. Since chest computed tomography (CT) images of COVID-19 patients contain abundant pathological features closely related to this disease, rapid detection and diagnosis based on CT images is of great significance for the treatment of patients and blocking the spread of the disease. In particular, the segmentation of the COVID-19 CT lung-infected area can quantify and evaluate the severity of the disease. However, due to the blurred boundaries and low contrast between the infected and the non-infected areas in COVID-19 CT images, the manual segmentation of the COVID-19 lesion is laborious and places high demands on the operator. Quick and accurate segmentation of COVID-19 lesions from CT images based on deep learning has drawn increasing attention. To effectively improve the segmentation effect of COVID-19 lung infection, a modified UNet network that combines the squeeze-and-attention (SA) and dense atrous spatial pyramid pooling (Dense ASPP) modules) (SD-UNet) is proposed, fusing global context and multi-scale information. Specifically, the SA module is introduced to strengthen the attention of pixel grouping and fully exploit the global context information, allowing the network to better mine the differences and connections between pixels. The Dense ASPP module is utilized to capture multi-scale information of COVID-19 lesions. Moreover, to eliminate the interference of background noise outside the lungs and highlight the texture features of the lung lesion area, we extract in advance the lung area from the CT images in the pre-processing stage. Finally, we evaluate our method using the binary-class and multi-class COVID-19 lung infection segmentation datasets. The experimental results show that the metrics of Sensitivity, Dice Similarity Coefficient, Accuracy, Specificity, and Jaccard Similarity are 0.8988 (0.6169), 0.8696 (0.5936), 0.9906 (0.9821), 0.9932 (0.9907), and 0.7702 (0.4788), respectively, for the binary-class (multi-class) segmentation task in the proposed SD-UNet. The result of the COVID-19 lung infection area segmented by SD-UNet is closer to the ground truth compared to several existing models such as CE-Net, DeepLab v3+, UNet++, and other models, which further proves that a more accurate segmentation effect can be achieved by our method. It has the potential to assist doctors in making more accurate and rapid diagnosis and quantitative assessment of COVID-19.

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