scholarly journals Molecular detection and genetic characterization of Anaplasma marginale and Anaplasma platys-like (Rickettsiales: Anaplasmataceae) in water buffalo from eight provinces of Thailand

2020 ◽  
Vol 16 (1) ◽  
Author(s):  
Anh H. L. Nguyen ◽  
Sonthaya Tiawsirisup ◽  
Morakot Kaewthamasorn
Keyword(s):  
Water Buffalo ◽  
Pcr Amplification ◽  
Reservoir Host ◽  
Rrna Gene ◽  
Homology Searching ◽  
The Family ◽  
High Prevalence ◽  
Control And Prevention ◽  
Percentage Similarity ◽  
First Time

Abstract Background Anaplasmosis, an animal disease caused by rickettsial bacteria in the genus Anaplasma, is of considerable economic importance in livestock animals in many countries worldwide. The objectives of this study were to determine the identity, prevalence, and geographic distribution of Ehrlichia and Anaplasma in naturally infected water buffalo in Thailand using PCR amplification and sequencing of the 16S ribosomal RNA and heat shock protein groEL genes. A total of 456 buffalo blood samples from Thailand were investigated. Species identification and genetic differentiation of intra-population and inter-population with the global isolates were conducted based on nucleotide sequences. Interplay between the infection and host factors was also assessed. Results Overall, 41% of water buffalo were found to be infected with rickettsial organisms in the family Anaplasmataceae, but Ehrlichia spp., Neorickettsia spp., and Wolbachia spp. were not found in any of the sequenced samples in this study. Female buffalo were more frequently infected with bacteria in the family Anaplasmataceae than males [71 out of 176 females (40.3%) versus 11 out of 47 males (23.4%)]. The Odds Ratio value indicated that the risk of infection for female buffalo was 2.2-fold higher than that for males (p < 0.05). We detected three haplotypes of A. marginale 16S rRNA gene and they were placed in a clade that was closely related to the A. marginale in buffalo in China; and cattle in Thailand, Uganda, and China. Homology searching of groEL sequences against the GenBank™ database using the BLASTn algorithm revealed that the obtained sequences had a high percentage similarity (98.36–99.62%) to A. platys sequences. The groEL sequences of three A. platys-like isolates were clustered in the same clade as the A. platys from the tick Rhipicephalus microplus in China. Conclusions Our data showed that the apparently healthy buffalo were naturally infected by bacteria in the family Anaplasmataceae at a relatively high prevalence. We also report the finding of A. platys-like infections in water buffalo in Thailand for the first time. Water buffalo serving as the reservoir host of anaplasmosis is of concern for managing the disease control and prevention in ruminants.

Diversity of nodular bacteria ofScorpiurus muricatusin western Algeria and their impact on plant growth

2017 ◽  
Vol 63 (5) ◽  
pp. 450-463 ◽  
Author(s):  
Zoulikha Bouchiba ◽  
Zineb Faiza Boukhatem ◽  
Zohra Ighilhariz ◽  
Nouria Derkaoui ◽  
Benaissa Kerdouh ◽  
...  
Keyword(s):  
Plant Growth ◽  
Rhizobium Leguminosarum ◽  
Root Nodules ◽  
Pcr Amplification ◽  
Nucleotide Sequencing ◽  
Rrna Gene ◽  
Bacterial Strains ◽  
Single Strain ◽  
Western Algeria ◽  
First Time

A total of 51 bacterial strains were isolated from root nodules of Scorpiurus muricatus sampled from 6 regions of western Algeria. Strain diversity was assessed by rep-PCR amplification fingerprinting, which grouped the isolates into 28 different clusters. Partial nucleotide sequencing of the 16S rRNA gene and BLAST analysis revealed that root nodules of S. muricatus were colonized by different species close to Rhizobium vignae, Rhizobium radiobacter, Rhizobium leguminosarum, Phyllobacterium ifriqiyense, Phyllobacterium endophyticum, Starkeya sp., and Pseudomonas sp. However, none of these strains was able to form nodules on its host plant; even nodC was present in a single strain (SMT8a). The inoculation test showed a great improvement in the growth of inoculated plants compared with noninoculated control plants. A significant amount of indole acetic acid was produced by some strains, but only 2 strains could solubilize phosphate. In this report we described for the first time the diversity of bacteria isolated from root nodules of S. muricatus growing in different regions in western Algeria and demonstrated their potential use in promoting plant growth.

Natural Diversity of Frankia Strains in Actinorhizal Root Nodules from Promiscuous Hosts in the Family Myricaceae

1999 ◽  
Vol 65 (10) ◽  
pp. 4521-4527 ◽  
Author(s):  
Michael L. Clawson ◽  
David R. Benson
Keyword(s):  
Molecular Diversity ◽  
Root Nodule ◽  
Root Nodules ◽  
Reservoir Host ◽  
Rrna Gene ◽  
16S Rrna Gene Sequences ◽  
Myrica Gale ◽  
The Family ◽  
The Common ◽  
Selection Of

ABSTRACT Actinorhizal plants invade nitrogen-poor soils because of their ability to form root nodule symbioses with N2-fixing actinomycetes known as Frankia. Frankia strains are difficult to isolate, so the diversity of strains inhabiting nodules in nature is not known. To address this problem, we have used the variability in bacterial 16S rRNA gene sequences amplified from root nodules as a means to estimate molecular diversity. Nodules were collected from 96 sites primarily in northeastern North America; each site contained one of three species of the family Myricaceae. Plants in this family are considered to be promiscuous hosts because several species are effectively nodulated by most isolated strains ofFrankia in the greenhouse. We found that strain evenness varies greatly between the plant species so that estimating total strain richness of Frankia within myricaceous nodules with the sample size used was problematical. Nevertheless, Myrica pensylvanica, the common bayberry, was found to have sufficient diversity to serve as a reservoir host for Frankia strains that infect plants from other actinorhizal families. Myrica gale, sweet gale, yielded a few dominant sequences, indicating either symbiont specialization or niche selection of particular ecotypes. Strains in Comptonia peregrina nodules had an intermediate level of diversity and were all from a single major group of Frankia.

scholarly journals High Prevalence of Plasmid-Mediated Quinolone Resistance Determinants qnr, aac(6′)-Ib-cr, and qepA among Ceftiofur-Resistant Enterobacteriaceae Isolates from Companion and Food-Producing Animals

2008 ◽  
Vol 53 (2) ◽  
pp. 519-524 ◽  
Author(s):  
Junying Ma ◽  
Zhenling Zeng ◽  
Zhangliu Chen ◽  
Xiaogang Xu ◽  
Xiaoying Wang ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Klebsiella Pneumoniae ◽  
Companion Animals ◽  
Pcr Amplification ◽  
Guangdong Province ◽  
Quinolone Resistance ◽  
Resistance Determinants ◽  
The Family ◽  
High Prevalence ◽  
Few Data

ABSTRACT Three kinds of plasmid-mediated quinolone resistance (PMQR) determinants have been discovered and have been shown to be widely distributed among clinical isolates: qnr genes, aac(6′)-Ib-cr, and qepA. Few data on the prevalence of these determinants in strains from animals are available. The presence of PMQR genes in isolates from animals was determined by PCR amplification and DNA sequencing. The production of extended-spectrum β-lactamases (ESBLs) and AmpC β-lactamases in the strains was detected, and their genotypes were determined. The genetic environment of PMQR determinants in selected plasmids was analyzed. All samples of ceftiofur-resistant (MICs ≥ 8 μg/ml) isolates of the family Enterobacteriaceae were selected from 36 companion animals and 65 food-producing animals in Guangdong Province, China, between November 2003 and April 2007, including 89 Escherichia coli isolates, 9 Klebsiella pneumoniae isolates, and isolates of three other genera. A total of 68.3% (69/101) of the isolates produced ESBLs and/or AmpC β-lactamases, mainly those of the CTX-M and CMY types. Of the 101 strains, PMQR determinants were present in 35 (34.7%) isolates, with qnr, aac(6′)-Ib-cr, and qepA detected alone or in combination in 8 (7.9%), 19 (18.8%), and 16 (15.8%) strains, respectively. The qnr genes detected included one qnrB4 gene, four qnrB6 genes, and three qnrS1 genes. Five strains were positive for both aac(6′)-Ib-cr and qepA, while one strain was positive for qnrS1, aac(6′)-Ib-cr, and qepA. qnrB6 was flanked by two copies of ISCR1 with an intervening dfr gene downstream and sul1 and qacEΔ1 genes upstream. In another plasmid, aac(6′)-Ib-cr followed intI1 and arr-3 was downstream. PMQR determinants are highly prevalent in ceftiofur-resistant Enterobacteriaceae strains isolated from animals in China. This is the first report of the occurrence of PMQR determinants among isolates from companion animals.

scholarly journals Health and saliva microbiomes of a semi-urbanized indigenous tribe in Peninsular Malaysia

F1000Research ◽  
2019 ◽  
Vol 8 ◽  
pp. 175
Author(s):  
Li-Fang Yeo ◽  
Farhang F. Aghakhanian ◽  
James S. Y. Tan ◽  
Han Ming Gan ◽  
Maude E. Phipps
Keyword(s):  
Abdominal Obesity ◽  
Smoking Status ◽  
Age Groups ◽  
Surrogate Marker ◽  
Pcr Amplification ◽  
Illumina Miseq ◽  
Peninsular Malaysia ◽  
Rrna Gene ◽  
Salting Out ◽  
High Prevalence

Background: The indigenous people of Peninsular Malaysia, also known as Orang Asli, have gradually been urbanized. A shift towards non-communicable diseases commonly associated with sedentary lifestyles have been reported in many tribes. This study engaged with a semi-urbanized Temiar tribe from Kampong Pos Piah, Perak, who are experiencing an epidemiological transition. Methods:  Weight, height, waist circumference, blood pressure, HbA1C and lipid levels were measured as indicators of cardio-metabolic health. DNA was extracted from saliva using salting-out method followed by PCR amplification of the V3-V4 region of the 16S rRNA gene and sequencing on Illumina MiSeq. Microbiome analysis was conducted on Qiime v1.9. Statistical analysis was conducted using Qiime v1.9 and R.   Results: The study revealed that 60.4% of the Temiar community were overweight/obese, with a higher prevalence among women. HbA1C levels showed that 45% of Temiar had pre-diabetes. Insulin resistance was identified in 21% of Temiar by using a surrogate marker, TG/HDL. In total, 56.5% of Temiar were pre-hypertensive, and the condition was prevalent across all age-groups. The saliva microbiome profiles of Temiar revealed significant differences by gender, BMI, abdominal obesity as well as smoking status. The relative abundance of Bifidobacterium was increased in men whereas Prevotella, Capnocytophaga, Leptotrichia, Neisseria and Streptococcus were increased in women. Proteobacteria was significantly depleted in smokers. Conclusions: Temiar from Pos Piah had a high prevalence of cardio-metabolic risks, including general and abdominal obesity, pre-diabetes, prehypertension and hypertension. This phenomenon has not been previously reported in this tribe. The saliva microbiome profiles were significantly different for individuals of different gender, BMI scores, abdominal obesity and smoking status.

scholarly journals Occurrence and multilocus genotyping of Giardia duodenalis in pets and zoo animals in Shanghai, China

2017 ◽  
Vol 11 (06) ◽  
pp. 479-486 ◽  
Author(s):  
Hua Liu ◽  
Yujuan Shen ◽  
Aiqin Liu ◽  
Jianhai Yin ◽  
Zhongying Yuan ◽  
...  
Keyword(s):  
Giardia Duodenalis ◽  
Pcr Amplification ◽  
Amino Acid Sequences ◽  
Giardia Infection ◽  
Multilocus Genotyping ◽  
High Prevalence ◽  
Amplification Rate ◽  
Zoo Animals ◽  
First Time

Introduction: High prevalence of Giardia infections occurs in humans and animals, partly because of the increasing numbers of pets. We determined the presence and genotypes of G. duodenalis in pets and zoo animals. Methodology: A total of 84 specimens were collected from dogs and cats from a pet hospital, and 54 specimens from a zoo, which included deer, tigers, yaks, and others. All the specimens were examined by microscopy and by polymerase chain reaction (PCR) amplification and subsequent sequencing of glutamate dehydrogenase (gdh), beta-giardin (bg), and triose phosphate isomerase (tpi) genes. Results: Giardia infection was confirmed in 5.95% and 15.48% of animals by microscopy and by PCR, respectively; the detection levels were 13.33% and 26.67% for pets, and 1.85% and 9.26% for zoo animals. Four assemblages were identified: assemblage C in dogs, cats, and a sheep; D in dogs, a wolf, a yak, and a leopard; E in a sheep; and F in a cat and a leopard. PCR gave the highest amplification rate at the gdh locus. Eight, five, and four sequences were novel at the gdh, bg, and tpi loci, respectively. Two tpi sequences of dog-derived assemblage C had 100% homology with amino acid sequences from human-derived isolates. Conclusions: The molecular characterization of G. duodenalis in pets and zoo animals in China is described. Assemblage D was identified in a yak and a leopard for the first time. Multilocus genotyping analysis identified the same tpi gene sequences of assemblage C in dogs and humans, indicating potential zoonotic transmission.

Phylogenetic position of Coronastrum ellipsoideum and description of Parachlorella hussii sp. nov.

Biologia ◽  
2011 ◽  
Vol 66 (4) ◽  
Author(s):  
Christina Bock ◽  
Marie Pažoutová ◽  
Lothar Krienitz
Keyword(s):  
Molecular Data ◽  
Phylogenetic Position ◽  
Rrna Gene ◽  
Combined Approach ◽  
Molecular Analyses ◽  
Phylogenetic Studies ◽  
The Family ◽  
Its Rrna Gene ◽  
Molecular Phylogenetic ◽  
First Time

AbstractFollowing traditional morphological concepts, the genus Coronastrum is considered to be a rare member of the Scenedesmaceae (Chorophyceae). This classification may be called into question when molecular data are taken into account as well. Recent molecular phylogenetic studies revealed the polyphyletic origin of the family Scenedesmaceae within the Chlorophyceae and Trebouxiophyceae. In a combined approach of morphological analyses, SSU/ITS rRNA gene phylogeny and comparison of the ITS secondary structure, we analysed the systematics of Coronastrum strains available in public strain collections. Our molecular analyses revealed a new subclade within the Chlorella clade of the Chlorellaceae consisting of Coronastrum ellipsoideum, two strains with Dictyosphaerium-like morphology and one strain which fits the description of the genus Parachlorella. Four additional strains formed together a new lineage within the genus Parachlorella in the Parachlorella clade of the Chlorellaceae. These strains differ from the already known Parachlorella species in complementary base changes within the ITS2 and are here described for the first time as Parachlorella hussii sp. nov.

scholarly journals Babesia microti in Rodents from Different Habitats of Lithuania

Animals ◽  
2021 ◽  
Vol 11 (6) ◽  
pp. 1707
Author(s):  
Dalytė Mardosaitė-Busaitienė ◽  
Jana Radzijevskaja ◽  
Linas Balčiauskas ◽  
Algimantas Paulauskas
Keyword(s):  
18S Rrna ◽  
18S Rrna Gene ◽  
Reservoir Host ◽  
Clethrionomys Glareolus ◽  
Babesia Microti ◽  
Rrna Gene ◽  
Apodemus Flavicollis ◽  
Study Sites ◽  
First Time ◽  
Partial 18S

Babesia microti (Aconoidasida: Piroplasmida) (Franca, 1910) is an emerging tick-borne parasite with rodents serving as the considered reservoir host. However, the distribution of B. microti in Europe is insufficiently characterized. Based on the sample of 1180 rodents from 19 study sites in Lithuania, the objectives of this study were: (1) to investigate the presence of Babesia parasites in eight species of rodents, (2) to determine the prevalence of Babesia parasites in rodents from different habitats, and (3) to characterize the detected Babesia strains using partial sequencing of the 18S rRNR gene. Babesia DNA was detected in 2.8% rodents. The highest prevalence of Babesia was found in Microtus oeconomus (14.5%) and Microtus agrestis (7.1%) followed by Clethrionomys glareolus (2.3%), Apodemus flavicollis (2.2%) and Micromys minutus (1.3%). In M. minutus, Babesia was identified for the first time. The prevalence of Babesia-infected rodents was higher in the meadow (5.67%) than in the ecotone (1.69%) and forest (0.31%) habitats. The sequence analysis of the partial 18S rRNA gene reveals that Babesia isolates derived from rodents were 99–100% identical to human pathogenic B. microti ‘Jena/Germany’ strain.

scholarly journals First Molecular Survey on Anaplasma phagocytophilum Re-vealed High Prevalence in Rural Dogs from Khuzestan Prov-ince, Iran

2019 ◽  
Author(s):  
Hossein HAMIDINEJAT ◽  
Somayeh BAHRAMI ◽  
Bahman MOSALANEJAD ◽  
Sharareh PAHLAVAN
Keyword(s):  
Nested Pcr ◽  
Anaplasma Phagocytophilum ◽  
Rrna Gene ◽  
Microscopical Examination ◽  
Khuzestan Province ◽  
Molecular Survey ◽  
High Prevalence ◽  
Pcr Method ◽  
Southwestern Iran ◽  
First Time

Background: Anaplasmosis due to Anaplasma phagocytophilum is an important tick-borne zoonotic disease, which affects dogs, horses, cattle and human as well. This study aimed to probe the existence of this organism by means of molecular biology techniques for the first time in rural dogs of Khuzestan province, Southwestern Iran. Methods: During Sep 2014 to Apr 2015 blood samples of 103 apparently healthy rural dogs (60 males) were collected for A. phagocytophilum detection by light microscopical examination of Giemsa stained slides and Nested PCR on a fragment of 16S rRNA gene. Results: From the examined slides, 11.65% were positive for A. morulae while 57.28% of infection was revealed by Nested PCR method. There was no statistical difference between ages and sexes of dogs and infection in molecular survey of A. phagocytophilum. Conclusion: Molecular prevalence of A. phagocytophilum was noticeably high. It may cause the incidence of disease in human population.

Schmidleinema santiniketanense sp. nov. (Cyanobacteria/ Cyanoprokaryota) from a building facade in Santiniketan, India

Phytotaxa ◽  
2016 ◽  
Vol 283 (2) ◽  
pp. 181 ◽  
Author(s):  
NITIN KESHARI ◽  
SUDIPTA KUMAR DAS ◽  
SIBA PRASAD ADHIKARY
Keyword(s):  
West Bengal ◽  
Morphological Characters ◽  
Molecular Data ◽  
Phylogenetic Position ◽  
Rrna Gene ◽  
Rare Occurrence ◽  
Climatic Region ◽  
Consensus Tree ◽  
The Family ◽  
First Time

Schmidleinema is a monotypic genus in the family Fischerellaceae (Cyanobacteria / Cyanoprokaryota) with S. indicum is the sole species described so far. Due to its rare occurrence and reported only from a tropical climatic region, the taxon was not thoroughly studied, thus its taxonomic position is ubiquitous. No molecular data of the species is available so far. While studying the aero-terrestrial cyanobacterial flora of Santiniketan, West Bengal (India), a new Schmidleinema species, i.e. Schmidleinema santiniketanense sp. nov. was documented.  Light microscopic study of morphological characters of the species revealed its distinctness from the earlier descriptions of Schmidleinema indicum, particularly in the characteristics of sheath and branching pattern. Partial sequence of 16S rRNA gene of the species was obtained and deposited in GenBank for the first time. A consensus tree prepared with  sequences of different groups of  heterocystous and branched cyanobacteria retrieved from GenBank showed its phylogenetic position.

scholarly journals Molecular Evidence for Association of Chlamydiales Bacteria with Epitheliocystis in Leafy Seadragon (Phycodurus eques), Silver Perch (Bidyanus bidyanus), and Barramundi (Lates calcarifer)

2006 ◽  
Vol 72 (1) ◽  
pp. 284-290 ◽  
Author(s):  
Adam Meijer ◽  
Paul J. M. Roholl ◽  
Jacobus M. Ossewaarde ◽  
Brian Jones ◽  
Barbara F. Nowak
Keyword(s):  
Phylogenetic Analysis ◽  
16S Rrna ◽  
16S Rrna Gene ◽  
Molecular Evidence ◽  
Rrna Gene ◽  
Lates Calcarifer ◽  
The Family ◽  
First Time ◽  
Specific Sequences

ABSTRACT Epitheliocystis in leafy seadragon (Phycodurus eques), silver perch (Bidyanus bidyanus), and barramundi (Lates calcarifer), previously associated with chlamydial bacterial infection using ultrastructural analysis, was further investigated by using molecular and immunocytochemical methods. Morphologically, all three species showed epitheliocystis cysts in the gills, and barramundi also showed lymphocystis cysts in the skin. From gill cysts of all three species and from skin cysts of barramundi 16S rRNA gene fragments were amplified by PCR and sequenced, which clustered by phylogenetic analysis together with other chlamydia-like organisms in the order Chlamydiales in a lineage separate from the family Chlamydiaceae. By using in situ RNA hybridization, 16S rRNA Chlamydiales-specific sequences were detected in gill cysts of silver perch and in gill and skin cysts of barramundi. By applying immunocytochemistry, chlamydial antigens (lipopolysaccharide and/or membrane protein) were detected in gill cysts of leafy seadragon and in gill and skin cysts of barramundi, but not in gill cysts of silver perch. In conclusion, this is the first time epitheliocystis agents of leafy seadragon, silver perch and barramundi have been undoubtedly identified as belonging to bacteria of the order Chlamydiales by molecular methods. In addition, the results suggested that lymphocystis cysts, known to be caused by iridovirus infection, could be coinfected with the epitheliocystis agent.

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