Kenyan Elephant Feed Preferences Explored by near Infrared Spectroscopy

1997 ◽  
Vol 5 (2) ◽  
pp. 99-111 ◽  
Author(s):  
S.J. Lister ◽  
M.S. Dhanoa ◽  
P.O.M. Omondi ◽  
I. Mueller-Harvey
Keyword(s):  
Spectral Data ◽  
Tree Species ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Complete Separation ◽  
Eucalyptus Saligna ◽  
Forest Reserve ◽  
Bersama Abyssinica ◽  
And Cluster Analysis

Near infrared (NIR) spectroscopy was used to examine leaf and bark samples from Mount Kenya Forest Reserve to investigate the feeding preferences of elephants. Systematic differences were observed in specific spectral regions between leaf material from preferred ( Lasianthus kilimandscharica) and non-preferred ( Bersama abyssinica) tree species, i.e. 1640–1750, 2000–2150, 2200–2250 and 2280–2400 nm. Differences between bark samples from preferred ( Eucalyptus saligna) and non-preferred ( Vitex keniensis) tree species were observed in the 1100–1200, 1300, 1640–1750 and 2250–2400 nm regions. Qualitative multivariate analysis of the spectral data using principal component and cluster analysis achieved complete separation of the preferred and non-preferred samples for both leaf and bark material. Interpretation of the spectral data was used as an aid to select which chemical analyses should be performed next. In addition to phenolic compounds, it is suggested that nitrogenous, carbohydrate and fibre fractions be examined.

scholarly journals Separation of Cultivars of Soybeans by Chemometric Methods Using Near Infrared Spectroscopy

2018 ◽  
Vol 10 (4) ◽  
pp. 351
Author(s):  
João S. Panero ◽  
Henrique E. B. da Silva ◽  
Pedro S. Panero ◽  
Oscar J. Smiderle ◽  
Francisco S. Panero ◽  
...  
Keyword(s):  
Spectral Data ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Hierarchical Cluster ◽  
Relevant Information ◽  
Whole Grains ◽  
Signal Correction ◽  
Different Types ◽  
Linear Fit

Near Infrared (NIR) Spectroscopy technique combined with chemometrics methods were used to group and identify samples of different soy cultivars. Spectral data, collected in the range of 714 to 2500 nm (14000 to 4000 cm-1), were obtained from whole grains of four different soybean cultivars and were submitted to different types of pre-treatments. Chemometrics algorithms were applied to extract relevant information from the spectral data, to remove the anomalous samples and to group the samples. The best results were obtained considering the spectral range from 1900.6 to 2187.7 nm (5261.4 cm-1 to 4570.9 cm-1) and with spectral treatment using Multiplicative Signal Correction (MSC) + Baseline Correct (linear fit), what made it possible to the exploratory techniques Principal Component Analysis (PCA) and Hierarchical Cluster Analysis (HCA) to separate the cultivars. Thus, the results demonstrate that NIR spectroscopy allied with de chemometrics techniques can provide a rapid, nondestructive and reliable method to distinguish different cultivars of soybeans.

scholarly journals Prediction of the Carbon Content of Six Tree Species from Visible-Near-Infrared Spectroscopy

Forests ◽  
2021 ◽  
Vol 12 (9) ◽  
pp. 1233
Author(s):  
Yongbin Meng ◽  
Yuanyuan Zhang ◽  
Chunxu Li ◽  
Jinghan Zhao ◽  
Zichun Wang ◽  
...  
Keyword(s):  
Root Mean Square Error ◽  
Carbon Content ◽  
Spectral Data ◽  
Mean Square Error ◽  
Tree Species ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Mean Square ◽  
Chemometric Methods ◽  
Full Spectrum

This study aimed to measure the carbon content of tree species rapidly and accurately using visible and near-infrared (Vis-NIR) spectroscopy coupled with chemometric methods. Currently, the carbon content of trees used for calculating the carbon storage of forest trees in the study of carbon sequestration is obtained by two methods. One involves measuring carbon content in the laboratory (K2CrO7-H2SO4 oxidation method or elemental analyzer), and another involves directly using the IPCC (Intergovernmental Panel on Climate Change) default carbon content of 0.45 or 0.5. The former method is destructive, time-consuming, and expensive, while the latter is subjective. However, Vis-NIR detection technology can avoid these shortcomings and rapidly determine carbon content. In this study, 96 increment core samples were collected from six tree species in the Heilongjiang province of China for analysis. The spectral data were preprocessed using seven methods, including extended multiplicative scatter correction (EMSC), first derivative (1D), second derivative (2D), baseline correction, de-trend, orthogonal signal correction (OSC), and normalization to eliminate baseline drifting and noise, as well as to enhance the model quality. Linear models were established from the spectra using partial least squares regression (PLS). At the same time, we also compared the effects of full-spectrum and reduced spectrum on the model’s performance. The results showed that the spectral data processed by 1D with the full spectrum could obtain a better prediction model. The 1D method yielded the highest R2c of 0.92, an RMSEC (root-mean-square error of calibration) of 0.0056, an R2p of 0.99, an RMSEP (root-mean-square error of prediction) of 0.0020, and the highest RPD (residual prediction deviation) value of 8.9. The results demonstrate the feasibility of Vis-NIR spectroscopy coupled with chemometric methods in determining the carbon content of tree species as a simple, rapid, and non-destructive method.

scholarly journals Influence of environmental factors on the detection of blood in sheep faeces using visible–near-infrared spectroscopy as a measure of Haemonchus contortus infection

2020 ◽  
Vol 13 (1) ◽  
Author(s):  
Elise A. Kho ◽  
Jill N. Fernandes ◽  
Andrew C. Kotze ◽  
Glen P. Fox ◽  
Maggy T. Sikulu-Lord ◽  
...  
Keyword(s):  
Principal Component Analysis ◽  
Haemonchus Contortus ◽  
Prediction Accuracy ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Component Analysis ◽  
Diagnostic Methods ◽  
Calibration Models ◽  
Good Prediction Accuracy

Abstract Background Existing diagnostic methods for the parasitic gastrointestinal nematode, Haemonchus contortus, are time consuming and require specialised expertise, limiting their utility in the field. A practical, on-farm diagnostic tool could facilitate timely treatment decisions, thereby preventing losses in production and flock welfare. We previously demonstrated the ability of visible–near-infrared (Vis–NIR) spectroscopy to detect and quantify blood in sheep faeces with high accuracy. Here we report our investigation of whether variation in sheep type and environment affect the prediction accuracy of Vis–NIR spectroscopy in quantifying blood in faeces. Methods Visible–NIR spectra were obtained from worm-free sheep faeces collected from different environments and sheep types in South Australia (SA) and New South Wales, Australia and spiked with various sheep blood concentrations. Spectra were analysed using principal component analysis (PCA), and calibration models were built around the haemoglobin (Hb) wavelength region (387–609 nm) using partial least squares regression. Models were used to predict Hb concentrations in spiked faeces from SA and naturally infected sheep faeces from Queensland (QLD). Samples from QLD were quantified using Hemastix® test strip and FAMACHA© diagnostic test scores. Results Principal component analysis showed that location, class of sheep and pooled versus individual samples were factors affecting the Hb predictions. The models successfully differentiated ‘healthy’ SA samples from those requiring anthelmintic treatment with moderate to good prediction accuracy (sensitivity 57–94%, specificity 44–79%). The models were not predictive for blood in the naturally infected QLD samples, which may be due in part to variability of faecal background and blood chemistry between samples, or the difference in validation methods used for blood quantification. PCA of the QLD samples, however, identified a difference between samples containing high and low quantities of blood. Conclusion This study demonstrates the potential of Vis–NIR spectroscopy for estimating blood concentration in faeces from various types of sheep and environmental backgrounds. However, the calibration models developed here did not capture sufficient environmental variation to accurately predict Hb in faeces collected from environments different to those used in the calibration model. Consequently, it will be necessary to establish models that incorporate samples that are more representative of areas where H. contortus is endemic.

scholarly journals Cancer Discrimination Using Fourier Transform Near-Infrared Spectroscopy with Chemometric Models

2015 ◽  
Vol 2015 ◽  
pp. 1-8 ◽  
Author(s):  
Hui Chen ◽  
Zan Lin ◽  
Chao Tan
Keyword(s):  
Cancer Diagnosis ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Classification Model ◽  
Support Vector ◽  
Biomedical Analysis ◽  
First Derivative ◽  
Svm Model ◽  
High Prediction

Near-infrared (NIR) spectroscopy technique offers many potential advantages as tool for biomedical analysis since it enables the subtle biochemical signatures related to pathology to be detected and extracted. In conjunction with advanced chemometrics, NIR spectroscopy opens the possibility of their use in cancer diagnosis. The study focuses on the application of near-infrared (NIR) spectroscopy and classification models for discriminating colorectal cancer. A total of 107 surgical specimens and a corresponding NIR diffuse reflection spectral dataset were prepared. Three preprocessing methods were attempted and least-squares support vector machine (LS-SVM) was used to build a classification model. The hybrid preprocessing of first derivative and principal component analysis (PCA) resulted in the best LS-SVM model with the sensitivity and specificity of 0.96 and 0.96 for the training and 0.94 and 0.96 for test sets, respectively. The similarity performance on both subsets indicated that overfitting did not occur, assuring the robustness and reliability of the developed LS-SVM model. The area of receiver operating characteristic (ROC) curve was 0.99, demonstrating once again the high prediction power of the model. The result confirms the applicability of the combination of NIR spectroscopy, LS-SVM, PCA, and first derivative preprocessing for cancer diagnosis.

scholarly journals A fast and low-cost approach to quality control of alcohol-based hand sanitizer using portable near infrared spectrometer and chemometrics

2021 ◽  
pp. 096703352098731
Author(s):  
Adenilton C da Silva ◽  
Lívia PD Ribeiro ◽  
Ruth MB Vidal ◽  
Wladiana O Matos ◽  
Gisele S Lopes
Keyword(s):  
Quality Control ◽  
Discriminant Analysis ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Partial Least Square ◽  
Least Square ◽  
Chemical Components ◽  
Linear Discriminant ◽  
Hand Sanitizer

The use of alcohol-based hand sanitizers is recommended as one of several strategies to minimize contamination and spread of the COVID-19 disease. Current reports suggest that the virucidal potential of ethanol occurs at concentrations close to 70%. Traditional methods of verifying the ethanol concentration in such products invite potential errors due to the viscosity of chemical components or may be prohibitively expensive to undertake in large demand. Near infrared (NIR) spectroscopy and chemometrics have already been used for the determination of ethanol in other matrices and present an alternative fast and reliable approach to quality control of alcohol-based hand sanitizers. In this study, a portable NIR spectrometer combined with classification chemometric tools, i.e., partial least square discriminant analysis (PLS–DA) and linear discriminant analysis with successive algorithm projection (SPA–LDA) were used to construct models to identify conforming and non-conforming commercial and laboratory synthesized hand sanitizer samples. Principal component analysis (PCA) was applied in an exploratory data study. Three principal components accounted for 99% of data variance and demonstrate clustering of conforming and non-conforming samples. The PLS–DA and SPA–LDA classification models presented 77 and 100% of accuracy in cross/internal validation respectively and 100% of accuracy in the classification of test samples. A total of 43% commercial samples evaluated using the PLS–DA and SPA–LDA presented ethanol content non-conforming for hand sanitizer gel. These results indicate that use of NIR spectroscopy and chemometrics is a promising strategy, yielding a method that is fast, portable, and reliable for discrimination of alcohol-based hand sanitizers with respect to conforming and non-conforming ethanol concentrations.

Estimation of soil organic matter using proximal and satellite sensors after a wildfire in Mediterranean Croatia

2021 ◽  
Author(s):  
Iva Hrelja ◽  
Ivana Šestak ◽  
Igor Bogunović
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Spectral Data ◽  
Near Infrared ◽  
Mean Squared Error ◽  
Nir Spectroscopy ◽  
Soil Samples ◽  
Least Squares Regression ◽  
Macro Scale ◽  
Sentinel 2

<p>Spectral data obtained from optical spaceborne sensors are being recognized as a valuable source of data that show promising results in assessing soil properties on medium and macro scale. Combining this technique with laboratory Visible-Near Infrared (VIS-NIR) spectroscopy methods can be an effective approach to perform robust research on plot scale to determine wildfire impact on soil organic matter (SOM) immediately after the fire. Therefore, the objective of this study was to assess the ability of Sentinel-2 superspectral data in estimating post-fire SOM content and comparison with the results acquired with laboratory VIS-NIR spectroscopy.</p><p>The study is performed in Mediterranean Croatia (44° 05’ N; 15° 22’ E; 72 m a.s.l.), on approximately 15 ha of fire affected mixed <em>Quercus ssp.</em> and <em>Juniperus ssp.</em> forest on Cambisols. A total of 80 soil samples (0-5 cm depth) were collected and geolocated on August 22<sup>nd</sup> 2019, two days after a medium to high severity wildfire. The samples were taken to the laboratory where soil organic carbon (SOC) content was determined via dry combustion method with a CHNS analyzer. SOM was subsequently calculated by using a conversion factor of 1.724. Laboratory soil spectral measurements were carried out using a portable spectroradiometer (350-1050 nm) on all collected soil samples. Two Sentinel-2 images were downloaded from ESAs Scientific Open Access Hub according to the closest dates of field sampling, namely August 31<sup>st</sup> and September 5<sup>th </sup>2019, each containing eight VIS-NIR and two SWIR (Short-Wave Infrared) bands which were extracted from bare soil pixels using SNAP software. Partial least squares regression (PLSR) model based on the pre-processed spectral data was used for SOM estimation on both datasets. Spectral reflectance data were used as predictors and SOM content was used as a response variable. The accuracy of the models was determined via Root Mean Squared Error of Prediction (RMSE<sub>p</sub>) and Ratio of Performance to Deviation (RPD) after full cross-validation of the calibration datasets.</p><p>The average post-fire SOM content was 9.63%, ranging from 5.46% minimum to 23.89% maximum. Models obtained from both datasets showed low RMSE<sub>p </sub>(Spectroscopy dataset RMSE<sub>p</sub> = 1.91; Sentinel-2 dataset RMSE<sub>p</sub> = 0.99). RPD values indicated very good predictions for both datasets (Spectrospcopy dataset RPD = 2.72; Sentinel-2 dataset RPD = 2.22). Laboratory spectroscopy method with higher spectral resolution provided more accurate results. Nonetheless, spaceborne method also showed promising results in the analysis and monitoring of SOM in post-burn period.</p><p><strong>Keywords:</strong> remote sensing, soil spectroscopy, wildfires, soil organic matter</p><p><strong>Acknowledgment: </strong>This work was supported by the Croatian Science Foundation through the project "Soil erosion and degradation in Croatia" (UIP-2017-05-7834) (SEDCRO). Aleksandra Perčin is acknowledged for her cooperation during the laboratory work.</p>

Reaction Monitoring in Explorative Organic Synthesis Using Fiber-Optical NIR Spectroscopy and Principal Component Analysis

1996 ◽  
Vol 50 (12) ◽  
pp. 1541-1544 ◽  
Author(s):  
Hans-René Bjørsvik
Keyword(s):  
Principal Component Analysis ◽  
Data Analysis ◽  
Latent Variables ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Component Analysis ◽  
Quantitative Information ◽  
Chemistry Laboratory ◽  
Reaction Profile

A method of combining spectroscopy and multivariate data analysis for obtaining quantitative information on how a reaction proceeds is presented. The method is an approach for the explorative synthetic organic laboratory rather than the analytical chemistry laboratory. The method implements near-infrared spectroscopy with an optical fiber transreflectance probe as instrumentation. The data analysis consists of decomposition of the spectral data, which are recorded during the course of a reaction by using principal component analysis to obtain latent variables, scores, and loading. From the scores and the corresponding reaction time, it is possible to obtain a reaction profile. This reaction profile can easily be recalculated to obtain the concentration profile over time. This calculation is based on only two quantitative measurements, which can be (1) measurement from the work-up of the reaction or (2) chromatographic analysis from two withdrawn samples during the reaction. The method is applied to the synthesis of 3-amino-propan-1,2-diol.

Near infrared spectroscopy as an alternative method for rapid determination of the solidification point of 2,4,6-trinitrotoluene in production

2019 ◽  
Vol 27 (4) ◽  
pp. 286-292
Author(s):  
Chongchong She ◽  
Min Li ◽  
Yunhui Hou ◽  
Lizhen Chen ◽  
Jianlong Wang ◽  
...  
Keyword(s):  
Infrared Spectroscopy ◽  
Near Infrared Spectroscopy ◽  
Near Infrared ◽  
Rapid Determination ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Quality Parameter ◽  
Solidification Point ◽  
Fast Analysis ◽  
Online Application

The solidification point is a key quality parameter for 2,4,6-trinitrotoluene (TNT). The traditional solidification point measurement method of TNT is complicated, dangerous, not environmentally friendly and time-consuming. Near infrared spectroscopy (NIR) analysis technology has been applied successfully in the chemical, petroleum, food, and agriculture sectors owing to its characteristics of fast analysis, no damage to the sample and online application. The purpose of this study was to study near infrared spectroscopy combined with chemometric methods to develop a fast and accurate quantitative analysis method for the solidification point of TNT. The model constructed using PLS regression was successful in predicting the solidification point of TNT ([Formula: see text] = 0.999, RMSECV = 0.19, RPDCa = 33.5, [Formula: see text] = 0.19, [Formula: see text] = 0.999). Principal component analysis shows that the model could identify samples from different reactors. The results clearly demonstrate that the solidification point can be measured in a short time by NIR spectroscopy without any pretreatment for the sample and skilled laboratory personnel.

Classification of fish species from different ecosystems using the near infrared diffuse reflectance spectra of otoliths

2020 ◽  
Vol 28 (4) ◽  
pp. 224-235
Author(s):  
Irina M Benson ◽  
Beverly K Barnett ◽  
Thomas E Helser
Keyword(s):  
Discriminant Analysis ◽  
Spatial Variability ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Classification Model ◽  
Support Vector ◽  
Otolith Chemistry ◽  
K Nearest Neighbor ◽  
Fisheries Science

Applications of Fourier transform near infrared (FT-NIR) spectroscopy in fisheries science are currently limited. This current analysis of otolith spectral data demonstrate the potential applicability of FT-NIR spectroscopy to otolith chemistry and spatial variability in fisheries science. The objective of this study was to examine the use of NIR spectroscopy as a tool to differentiate among marine fishes in four large marine ecosystems. We examined otoliths from 13 different species, with three of these species coming from different regions. Principal component analysis described the main directions along which the specimens were separated. The separation of species and their ecosystems may suggest interactions between fish phylogeny, ontogeny, and environmental conditions that can be evaluated using NIR spectroscopy. In order to discriminate spectra across ecosystems and species, four supervised classification model techniques were utilized: soft independent modelling of class analogies, support vector machine discriminant analysis, partial least squares discriminant analysis, and k-nearest neighbor analysis (KNN). This study showed that the best performing model to classify combined ecosystems, all four ecosystems, and species was the KNN model, which had an overall accuracy rate of 99.9%, 97.6%, and 91.5%, respectively. Results from this study suggest that further investigations are needed to determine applications of NIR spectroscopy to otolith chemistry and spatial variability.

Wine Authentication Using Integration Assay of MIR, NIR, E-tongue, HS-SPME-GC-MS, and Multivariate Analyses: A Case Study for a Typical Cabernet Sauvignon Wine

2019 ◽  
Vol 102 (4) ◽  
pp. 1174-1180
Author(s):  
Xinyu Jin ◽  
Shimin Wu ◽  
Wenjuan Yu ◽  
Xinyi Xu ◽  
Mingquan Huang ◽  
...  
Keyword(s):  
Near Infrared ◽  
Solid Phase ◽  
Electronic Tongue ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Hierarchical Cluster ◽  
Cabernet Sauvignon ◽  
Mir Spectroscopy ◽  
Wine Authentication ◽  
Grey Relational

Abstract Background: Cabernet Sauvignon wine enjoys large market in China, and its adulteration has become a well-known problem and challenge. Objective: This study aims to evaluate the capabilities of multiple techniques, including headspace–solid-phase microextraction–GC-MS (HS-SPME-GC-MS), electronic tongue (E-tongue) spectroscopy, mid-infrared (MIR) spectroscopy, and near-infrared (NIR) spectroscopy, to differentiate this popular imported wine in China. Methods: MIR spectroscopy, NIR spectroscopy, E-tongue spectroscopy, and HS-SPME-GC-MS were used. Multivariate analysis techniques were applied to further explore the instrumental determination data for the wine discrimination. Results: Joint use of MIR and NIR with Grey relational analysis (GRA), E-tongue with principal component analysis (PCA) and hierarchical cluster analysis, and HS-SPME-GC-MS with PCA allowed unanimous differentiation of the wines. Conclusions: The approach described herein offers both ecologically friendly and multiperspective mutual corroboration techniques for Cabernet Sauvignon wine discrimination. The integrative methodology could be used as a reference for wine authentication. Highlights: GRA was first applied to discriminate the wine samples. Mutual corroboration was verified by multivariate statistics combined with MIR, NIR, E-tongue, and SPME-GC/MS. Integrated techniques pointed to a unanimous authentication of the wine samples.

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