2A16 Estimation of Critical Radius of Reversible Pore in Cell Membranes Using Molecular Dynamics Simulation

Author(s):  
Taiki SHIGEMATSU ◽  
Kenichiro KOSHIYAMA ◽  
Shigeo WADA
ACS Omega ◽  
2020 ◽  
Author(s):  
Aparajita Chakraborty ◽  
Elisey Kobzev ◽  
Jonathan Chan ◽  
Gayan Heruka de Zoysa ◽  
Vijayalekshmi Sarojini ◽  
...  

2021 ◽  
Vol 16 (4) ◽  
pp. 041003
Author(s):  
Mahsa Moradipour ◽  
Xinjie Tong ◽  
Brian Novak ◽  
Poorya Kamali ◽  
Shardrack O. Asare ◽  
...  

2020 ◽  
Author(s):  
Prabir Khatua ◽  
Asis Jana ◽  
Ulrich H. E. Hansmann

AbstractWhile Alzheimer’s disease is correlated with the presence of Aβ fibrils in patient brains, the more likely agents are their precursors, soluble oligomers that may form pores or otherwise distort cell membranes. Using all-atom molecular dynamics simulation we study how presence of fatty acids such as lauric acid changes the stability of pore-forming oligomers built from three-stranded Aβ42 chains. Such a change would alter the distribution of amyloids in the fatty-acid rich brain environment, and therefore could explain the lower polymorphism observed in Aβ-fibrils derived from brains of patients with Alzheimer’s disease. We find that lauric acid stabilizes both ring-like and barrel-shaped models, with the effect being stronger for barrel-like models than for ring-like oligomers.


2021 ◽  
Vol 901 ◽  
pp. 153-163
Author(s):  
Yuan Ching Lin ◽  
Shao Chan Lu ◽  
Po Hao Teng

The mechanism of annealing-induced amorphization of metallic glass is investigated in this study via molecular dynamics simulation. Spherical nucleuses of Cu–Ni–Al alloy with a face-centered cubic structure are embedded to simulate nanograins in Cu–Ni–Al amorphous alloy; subsequently, the material is annealed at different temperatures. The results show that the critical radius for nucleation at temperatures above the glass transition temperature (Tg) affected the behavior, grain growth, and annihilation of nanograins in the Cu–Ni–Al amorphous alloy during annealing. When the temperature increased, the critical radius for nucleation increased as well. This causes the small nanograins to annihilate quickly and the large nanograins to develop rapidly. When the annealing temperature is higher than Tg, part of the crystal nuclei, which is smaller than the critical radius, can be eliminated. The crystallinity of the metallic glass decreased, and the minimum crystallinity is attained after a period of annealing simulation. Subsequently, as the residual effective nanograins began developing, the crystallinity of the amorphous metal increased again. Therefore, the annealing duration time is critical to the crystallinity of the amorphous alloy after annealing.


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